These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [TTTTTTTTTTTTTAGACGAGCTCATGCCTTCTCGATTAGAAGCTCTCAAAAAAAATAATTGTTGCTCATGCGACCATGTATGAGGATATCTGTTAATTACTGTCATATAGCCCCTGGATAAAAGCACAAGTCTTCCAACACGGATCATATAAAATTTAGTGATTACAGTGACAATGCTAGTGAGAAGCTCTTCTGCCAGCACATCTAATTACTTTAATTTACTTGATCTTAGGTGAATATCTTGCTTGTAGATGCTGCAACAGAAAACTAATCAGCTCGGCATGAGGCGCCATCCTTGAAGCATTTTGAAACATCGAAAGGGTCCTTTGACATGTTGAATGCCCCCTGGAAGCACCATGCTGTAGCATCTATAGGAAATGGACTCTCATAGACNATCAGCTTACAGTCTTCATTGGCCAATCTTGTAGAAGCCATGAAAGTGCTCAGACTGGCACGCANCCNATCAGCTGAAGATGAACAGGTATGTGTCAGCACAACGACNACCTTCTCCAGCACCTGCCCACGCTCGGCAATGAACTTGAGAAAATCAAGCTCGCTTCTTTGCATTCTGAATTCACGCATGATAACGTTCTTGATGTGCTTCTGGAGGCACTCATTGGGGGAGGTTCTCCTGCACAACTTGGGATTGAGCTTGCCGGNNGGTGTTGCCACTAAAAGTGGTCTCTGACT] [+] EMBL CA763082 [TTTTTTTTTTTTTAGACGAGCTCATGCCTTCTCGATTAGAAGCTCTCAAAAAAAATAATTGTTGCTCATGCGACCATGTATGAGGATATCTGTTAATTACTGTCATATAGCCCCTGGATAAAAGCACAAGTCTTCCAACACGGATCATATAAAATTTAGTGATTACAGTGACAATGCTAGTGAGAAGCTCTTCTGCCAGCACATCTAATTACTTTAATTTACTTGATCTTAGGTGAATATCTTGCTTGTAGATGCTGCAACAGAAAACTAATCAGCTCGGCATGAGGCGCCATCCTTGAAGCATTTTGAAACATCGAAAGGGTCCTTTGACATGTTGAATGCCCCCTGGAAGCACCATGCTGTAGCATCTATAGGAAATGGACTCTCATAGACNATCAGCTTACAGTCTTCATTGGCCAATCTTGTAGAAGCCATGAAAGTGCTCAGACTGGCACGCANCCNATCAGCTGAAGATGAACAGGTATGTGTCAGCACAACGACNACCTTCTCCAGCACCTGCCCACGCTCGGCAATGAACTTGAGAAAATCAAGCTCGCTTCTTTGCATTCTGAATTCACGCATGATAACGTTCTTGATGTGCTTCTGGAGGCACTCATTGGGGGAGGTTCTCCTGCACAACTTGGGATTGAGCTTGCCGGNNGGTGTTGCCACTAAAAGTGGTCTCTGACT] consensusID : consensus_2590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [TTTTTTTTTTTTTTTTTTTAATCTCAAGGAACATTCTTAATGAAATTAGTAGTAATACAAAAGCAAGTGAAATATTAACATTACCAGGTGCATACTCATCTAGAAGTAGTTTAGGCTTTAGATAACTGCATGATAAATAACACAGCTAAATATCTTCAAAACATAAAAGTCACTCAGGCTGGCAAGTAGAGCTCTTCCCAATCCCCAAAAAGGGCATAGCCCACAACCTAGGAGAGTAGGGGTACCTTGCTTGTAGATGCTGGAACAGAAGACTAATCAGCTGGGCATGAGGCGCCATCCTTGAAGCATTTTGAAACATCAAAAGGGCCCTTTGACATGGTGAATGCCCCCTGGAACCACCATGCTGGAGCATGTATAGGAAAGGGACTGTCATAGACGATGAGGTAAGAGGCTTGGATTGGGCAAGTTTGTAAAAGCCATGGAAGCGGTGAGACTGGGGGCGGGCGCGAGGAGTTGGACATGACCCGGGTTGTGGGCGTCGACGGACGCGCTTTTGGAGGGGTGGGCACGCCGCAGCGGTCGGCGGGGTGAACTCGTGCGTGGGTTCTTTGGCTCGCCGGATGGCGGGCCGCTGTGCTGGTCTCCGACGGGCCCCTTGCCGGGTTCGCGCCTCCTC] [+] EMBL CA763246 [TTTTTTTTTTTTTTTTTTTAATCTCAAGGAACATTCTTAATGAAATTAGTAGTAATACAAAAGCAAGTGAAATATTAACATTACCAGGTGCATACTCATCTAGAAGTAGTTTAGGCTTTAGATAACTGCATGATAAATAACACAGCTAAATATCTTCAAAACATAAAAGTCACTCAGGCTGGCAAGTAGAGCTCTTCCCAATCCCCAAAAAGGGCATAGCCCACAACCTAGGAGAGTAGGGGTACCTTGCTTGTAGATGCTGGAACAGAAGACTAATCAGCTGGGCATGAGGCGCCATCCTTGAAGCATTTTGAAACATCAAAAGGGCCCTTTGACATGGTGAATGCCCCCTGGAACCACCATGCTGGAGCATGTATAGGAAAGGGACTGTCATAGACGATGAGGTAAGAGGCTTGGATTGGGCAAGTTTGTAAAAGCCATGGAAGCGGTGAGACTGGGGGCGGGCGCGAGGAGTTGGACATGACCCGGGTTGTGGGCGTCGACGGACGCGCTTTTGGAGGGGTGGGCACGCCGCAGCGGTCGGCGGGGTGAACTCGTGCGTGGGTTCTTTGGCTCGCCGGATGGCGGGCCGCTGTGCTGGTCTCCGACGGGCCCCTTGCCGGGTTCGCGCCTCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2590#0 --TTTTTTTTTTTTTAGACGAGCTCATG---CCTTCTCGATTAGA--AGCTCTCAAA-AA 52 consensus_2590#1 TTTTTTTTTTTTTTTTTTTAATCTCAAGGAACATTCTTAATGAAATTAGTAGTAATACAA 60 ************* * **** * * **** ** * * ** * * * ** consensus_2590#0 AAATAATTGT--TGCTCATGCGACCATGTATGAGGATATCTGTTAATTACTGTCATATAG 110 consensus_2590#1 AAGCAAGTGAAATATTAACATTACCAGGTGCATACTCATCTAGAAGTAGTT------TAG 114 ** ** ** * * * **** ** **** * * * *** consensus_2590#0 CCCCTGGATAAAAGCACAAGTCTTCCAACACGGATCATATAAAATTTAGTGATTACAGTG 170 consensus_2590#1 GCTTTAGATAACTGCATGATAAAT--AACACAG-CTAAATATCTTCAAAACATAAAAGTC 171 * * ***** *** * * ***** * * *** * * ** * *** consensus_2590#0 ACA-ATGCTAGTGAGAAGCTCTTCTGCCAGCACATCTAATTACTTTAATTTACTTGATCT 229 consensus_2590#1 ACTCAGGCTGGCAAGTAGAGCTCTTCCCAATCCCCAAAAAGGGCATAGCCCACAACCTAG 231 ** * *** * ** ** ** * *** * ** ** ** * consensus_2590#0 TAGGT---GAATATCTTGCTTGTAGATGCTGCAACAGAAAACTAATCAGCTCGGCATGAG 286 consensus_2590#1 GAGAGTAGGGGTACCTTGCTTGTAGATGCTGGAACAGAAGACTAATCAGCTGGGCATGAG 291 ** * ** ***************** ******* *********** ******** consensus_2590#0 GCGCCATCCTTGAAGCATTTTGAAACATCGAAAGGGTCCTTTGACATGTTGAATGCCCCC 346 consensus_2590#1 GCGCCATCCTTGAAGCATTTTGAAACATCAAAAGGGCCCTTTGACATGGTGAATGCCCCC 351 ***************************** ****** *********** *********** consensus_2590#0 TGGAAGCACCATGCTGTAGCATCTATAGGAAATGGACTCTCATAGACNATCAGCTTACAG 406 consensus_2590#1 TGGAACCACCATGCTGGAGCATGTATAGGAAAGGGACTGTCATAGACGATGAGGTAAGAG 411 ***** ********** ***** ********* ***** ******** ** ** * * ** consensus_2590#0 TCTTC-ATTGGCCAATCTTGTAGAAGCCATGAAAGTGCTCAGACTGGCA-CGCANCCNAT 464 consensus_2590#1 GCTTGGATTGGGCAAGTTTGTAAAAGCCATGGAAGCGGTGAGACTGGGGGCGGGCGCGAG 471 *** ***** *** ***** ******** *** * * ******* ** * * consensus_2590#0 CAGCTGAAGATGAACAGGTATGTGTCAGCACAACGACNACCTTCTCCAGCACCTGCCCAC 524 consensus_2590#1 GAGTTGGACATGACCCGGGTTGTGGGCGT-CGACGGACGCGCTTTTGGAGGGGTGGGCAC 530 ** ** * **** * ** **** * * *** * * * ** *** consensus_2590#0 GCTCGGCAATGAACTTGAGAAAATCAAGCTCGCTTCTTTGCATTCTGAATTCACGCATGA 584 consensus_2590#1 GCC--GCAGCGGTC---GGCGGGGTGAACTCGTGCGTGGGTTCTTTGGCTCGCCGGATGG 585 ** *** * * * * **** * * * ** * ** *** consensus_2590#0 TAACGTTCTTGATGTGCTTCTGGAGGCACTCATTGGGGGAGGTTCTCCTGCACAACTTGG 644 consensus_2590#1 CGG-GCCGCTGTGCTGGTCTCCGACGGGCCCCTTGCCGGGTTCGCGCCTCCTC------- 637 * ** ** * ** * * * *** ** * *** * * consensus_2590#0 GATTGAGCTTGCCGGNNGGTGTTGCCACTAAAAGTGGTCTCTGACT 690 consensus_2590#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||