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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[TTTTTTTTTTTTTTTAAGGAGCAATCATGGGTCATCCAGATTAAGATTGCAAGTAGACATGGCCATACTTCGTCTCATACATACTTCTTCCAAAGTTTAATCGCAAGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGAGCTCATGTAGCGTTCGCACAAGACTAAAGGTGTTCCATGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATGATGTTCTTTAAGAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGCAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATGAAGCCTTTGGAAGGGATGCANAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACAGGTATGTTCATAGCANGGCTCTTCAGAAATTCAGTTATAGCTTTCAATGATCCAAGGGAAGAAGCTTGCACATAAACACCCCCCCTTGTCTCG]
[+] EMBL CA763120 [TTTTTTTTTTTTTTTAAGGAGCAATCATGGGTCATCCAGATTAAGATTGCAAGTAGACATGGCCATACTTCGTCTCATACATACTTCTTCCAAAGTTTAATCGCAAGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGAGCTCATGTAGCGTTCGCACAAGACTAAAGGTGTTCCATGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATGATGTTCTTTAAGAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGCAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATGAAGCCTTTGGAAGGGATGCANAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACAGGTATGTTCATAGCANGGCTCTTCAGAAATTCAGTTATAGCTTTCAATGATCCAAGGGAAGAAGCTTGCACATAAACACCCCCCCTTGTCTCG]
consensusID : consensus_2598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTAAACTTAAAACATTTAAGGAGCAATCATGGGTCATCCAGATTAAAATTGCAAGTAAACATGGCCATACTTCGTCTCAAACATACTTCTTCCAAAGTTTAATCGCAGGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGGGCTCATGTAGCGTTCGCACAAAACTAAAGGTGTTCCACGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATAATGTTCTTTAAAAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGAAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATAAGGCCTTTGGAAGGGATGCAAAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACCGGTATGTTCATAGCAGGGCTCTTCAGAAATTCGGTTATAGCTTTCAATGATCCAA]
[+] EMBL CA763121 [TTTTTTTTTTTTTTTTTTTTTTTAAACTTAAAACATTTAAGGAGCAATCATGGGTCATCCAGATTAAAATTGCAAGTAAACATGGCCATACTTCGTCTCAAACATACTTCTTCCAAAGTTTAATCGCAGGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGGGCTCATGTAGCGTTCGCACAAAACTAAAGGTGTTCCACGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATAATGTTCTTTAAAAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGAAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATAAGGCCTTTGGAAGGGATGCAAAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACCGGTATGTTCATAGCAGGGCTCTTCAGAAATTCGGTTATAGCTTTCAATGATCCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2598#0 -----------TTTTTTTTTTTT------------TTTAAGGAGCAATCATGGGTCATCC 37
consensus_2598#1 TTTTTTTTTTTTTTTTTTTTTTTAAACTTAAAACATTTAAGGAGCAATCATGGGTCATCC 60
************ *************************
consensus_2598#0 AGATTAAGATTGCAAGTAGACATGGCCATACTTCGTCTCATACATACTTCTTCCAAAGTT 97
consensus_2598#1 AGATTAAAATTGCAAGTAAACATGGCCATACTTCGTCTCAAACATACTTCTTCCAAAGTT 120
******* ********** ********************* *******************
consensus_2598#0 TAATCGCAAGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGG 157
consensus_2598#1 TAATCGCAGGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGG 180
******** ***************************************************
consensus_2598#0 GAGCTCATGTAGCGTTCGCACAAGACTAAAGGTGTTCCATGCCAAATCGTCAACACCTTA 217
consensus_2598#1 GGGCTCATGTAGCGTTCGCACAAAACTAAAGGTGTTCCACGCCAAATCGTCAACACCTTA 240
* ********************* *************** ********************
consensus_2598#0 CCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTA 277
consensus_2598#1 CCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTA 300
************************************************************
consensus_2598#0 TCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCC 337
consensus_2598#1 TCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCC 360
************************************************************
consensus_2598#0 GATGATGTTCTTTAAGAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCAT 397
consensus_2598#1 GATAATGTTCTTTAAAAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCAT 420
*** *********** ********************************************
consensus_2598#0 CAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCT 457
consensus_2598#1 CAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCT 480
************************************************************
consensus_2598#0 TTATCGCAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTG 517
consensus_2598#1 TTATCGAAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTG 540
****** *****************************************************
consensus_2598#0 AAGCAATTTTCCCAATGCGGATGAAGCCTTTGGAAGGGATGCANAGAGGGGTTCCGACCT 577
consensus_2598#1 AAGCAATTTTCCCAATGCGGATAAGGCCTTTGGAAGGGATGCAAAGAGGGGTTCCGACCT 600
********************** * ****************** ****************
consensus_2598#0 GGAATAAAGGAAACAATCACAGACAGGTATGTTCATAGCANGGCTCTTCAGAAATTCAGT 637
consensus_2598#1 GGAATAAAGGAAACAATCACAGACCGGTATGTTCATAGCAGGGCTCTTCAGAAATTCGGT 660
************************ *************** **************** **
consensus_2598#0 TATAGCTTTCAATGATCCAAGGGAAGAAGCTTGCACATAAACACCCCCCCTTGTCTCG 695
consensus_2598#1 TATAGCTTTCAATGATCCAA-------------------------------------- 680
********************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||