cluster # 26

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Oryza sativa
cluster # 26 cluster # 26 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_26#0 length = 315 sequences # 1

consensus_26#1 length = 300 sequences # 1

consensusID : consensus_26#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [AAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATNTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTCTCACCACGACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCTCATGTCTGGACACTCGTACCTTCTCTCCANCTCCGCC]

[+] EMBL C72893               [AAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATNTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTCTCACCACGACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCTCATGTCTGGACACTCGTACCTTCTCTCCANCTCCGCC]




>consensus_26#0
AAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCC
TCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAG
ATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATNTCCAGCCGCCGTGCCATC
GCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTCTCACCACGACGCGCTCCTCACC
GTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCTCATGTCTGGACACTCGTACCTT
CTCTCCANCTCCGCC

consensusID : consensus_26#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [AAAAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCTTCCCTTCTCACCACGACGCGNTCCTCACCGTTCACTTCCGCNGCTTCAGGTCAAAGGGCTTTTTCCT]

[+] EMBL AU094846             [AAAAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCTTCCCTTCTCACCACGACGCGNTCCTCACCGTTCACTTCCGCNGCTTCAGGTCAAAGGGCTTTTTCCT]




>consensus_26#1
AAAAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCG
CCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGG
AGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGAT
CATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCTTCCCTTC
TCACCACGACGCGNTCCTCACCGTTCACTTCCGCNGCTTCAGGTCAAAGGGCTTTTTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_26#0      --AAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCG 58
consensus_26#1      AAAAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCG 60
                      **********************************************************

consensus_26#0      CCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGG 118
consensus_26#1      CCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGG 120
                    ************************************************************

consensus_26#0      AGAT--------------------GATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGAT 158
consensus_26#1      AGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGAT 180
                    ****                    ************************************

consensus_26#0      CATNTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTC 218
consensus_26#1      CATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCTTCCCTTC 240
                    *** ************************************************ *******

consensus_26#0      TCACCACGACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCT 278
consensus_26#1      TCACCACGACGCGNTCCTCACCGTTCACTTCCGCNGCTTCAGGTCAAAGGGCTTTTTCCT 300
                    ************* ************** ***** ** ******** ***** ** ****

consensus_26#0      CATGTCTGGACACTCGTACCTTCTCTCCANCTCCGCC 315
consensus_26#1      -------------------------------------