These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1012 fasta sequence [GTGGGGGAACCTCGCCGGCGATCCCTCCAAAGCCCAGAAGCGACGCCGCCGCCGCCGCCGCCAGCCGCCACGTTATCCATGAGGCCTCTCCTCGCCCGCCTCTTCGCCCCGACTTACATTGCCATGGGTTTCTCCTCCTCCGCGTCGCCGCCGTCCCGGCGGCTTGCCCACCTCACACGCCACCTCCTCCTCAGCTCCGGCGAGCTCTCCTCCTCGGTGGGCGCCCCCGCCGCCGCCGCCCGGCCGGCCTACCTCGCCGCCCCCAAGGGCTACGCCGCCGTGCTGGTCTGCCTCTTCGAGGACCCCCACGGCGGCGACCCCCGCGTCATCCTCACCAAGCGCGCCGCCTCCCTCTCCTCCCACTCCGGGGAGGTGTCGCTGCCGGGAGGGAAGGTGGAGGAGGGGGATGCGGATGCGACGGCGACGGCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCCTGCGCTTGTTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTCCAAGAACGGACTCCATGTAACTCCTGTAATCGGCATTCTTTCGGATAAAGCTTTATTCAAGCCTGTCTTGAATGAATCTGAAGTGGCAGACATCTTTGATGCACCTCTAGAGATGTTCCTGAAGGATGATAACCGGAAAACACAAGAATCGAATTGGATGGGCATGAATATTCCAGTCCAGTCTTTTGAGTACCAGTCAGAGGACAAAACGTTTGTGATTTGGGGCTTAACGGCACACATTCTGACTCGTGCTGCAGCAGTCGTTTTACCGAGAGAACCATCATTTGTTGAATTTCGACCAAGATATGTGAACTCACCCTCTGGAGATACGAATGAAACAAAACGCTGATGCAATACCATAATCGTCAATATGTAATTCTAGCATTTATCCCCTCCATTCAGAGGCAGCTGCTTGTGCCTGTCTATAGAAAATCAGCTTACTGTACTTTTTGTATGTACACGATAGTCCATAGAATGTTGCATCATCAGCATGTTGGAAAATTTGT] [+] EMBL AK064744 [GTGGGGGAACCTCGCCGGCGATCCCTCCAAAGCCCAGAAGCGACGCCGCCGCCGCCGCCGCCAGCCGCCACGTTATCCATGAGGCCTCTCCTCGCCCGCCTCTTCGCCCCGACTTACATTGCCATGGGTTTCTCCTCCTCCGCGTCGCCGCCGTCCCGGCGGCTTGCCCACCTCACACGCCACCTCCTCCTCAGCTCCGGCGAGCTCTCCTCCTCGGTGGGCGCCCCCGCCGCCGCCGCCCGGCCGGCCTACCTCGCCGCCCCCAAGGGCTACGCCGCCGTGCTGGTCTGCCTCTTCGAGGACCCCCACGGCGGCGACCCCCGCGTCATCCTCACCAAGCGCGCCGCCTCCCTCTCCTCCCACTCCGGGGAGGTGTCGCTGCCGGGAGGGAAGGTGGAGGAGGGGGATGCGGATGCGACGGCGACGGCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCCTGCGCTTGTTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTCCAAGAACGGACTCCATGTAACTCCTGTAATCGGCATTCTTTCGGATAAAGCTTTATTCAAGCCTGTCTTGAATGAATCTGAAGTGGCAGACATCTTTGATGCACCTCTAGAGATGTTCCTGAAGGATGATAACCGGAAAACACAAGAATCGAATTGGATGGGCATGAATATTCCAGTCCAGTCTTTTGAGTACCAGTCAGAGGACAAAACGTTTGTGATTTGGGGCTTAACGGCACACATTCTGACTCGTGCTGCAGCAGTCGTTTTACCGAGAGAACCATCATTTGTTGAATTTCGACCAAGATATGTGAACTCACCCTCTGGAGATACGAATGAAACAAAACGCTGATGCAATACCATAATCGTCAATATGTAATTCTAGCATTTATCCCCTCCATTCAGAGGCAGCTGCTTGTGCCTGTCTATAGAAAATCAGCTTACTGTACTTTTTGTATGTACACGATAGTCCATAGAATGTTGCATCATCAGCATGTTGGAAAATTTGT] consensusID : consensus_2603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 750 fasta sequence [ATGCGACTGCGACTGCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCCTGCGCTTGTTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTCCAAGGTAAACCCATTTTTTTTTCAAGTACTCTTGGCATGGTTGCGAAATCTAGGTAATGTTAGGTTATAGCTTTTACCTATGAATTTTAGTGGTTTGAATGTGCTTTTGTTACATTGCCTGTGTGGGATGGAAGTGAAACCATCGTCGATACAAAGAGGATCGGTAGTTAGTCGATCTAGTGTAAATCCTACTGAATTGCAGGAAGTGGCAGTAGCTGTGCTGCCAGAGCAGCAGCTATATAGTGCATGTTGCAGGTCAAATTCTGTTATAGTATTGAGTTGATATGAGATATTTGTAATATTTTAGCTTTTGAGCCCCAGTCTTAATATGCTGAATGGTTTATGTGTACTGCATCTGCATGCCTCAGATTGTTCAGAGAAACAGAAAGTGTGAAGCATTAGCGAATGAGTCAATCACAGAAGTCATGTGATTTTTTTTACCTTGTTCTTAGCATGTGTTAGATAGTGCTAATAAAAGTAGAAACCAATATGATGATCGATGGATTTTGATTCATTCAGAGACAATAATTCAATAAAGAGATAATGAAAATATGCTTGCTAGTTCATTTGATCTCTGTTTGCCATTTTATCGCTTGTTTGTGTATTGCTGATATGCCAATGCCATATCACATTTCTAGTCCCAAAGCGTTATATAA] [+] EMBL CB676726 [ATGCGACTGCGACTGCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCCTGCGCTTGTTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTCCAAGGTAAACCCATTTTTTTTTCAAGTACTCTTGGCATGGTTGCGAAATCTAGGTAATGTTAGGTTATAGCTTTTACCTATGAATTTTAGTGGTTTGAATGTGCTTTTGTTACATTGCCTGTGTGGGATGGAAGTGAAACCATCGTCGATACAAAGAGGATCGGTAGTTAGTCGATCTAGTGTAAATCCTACTGAATTGCAGGAAGTGGCAGTAGCTGTGCTGCCAGAGCAGCAGCTATATAGTGCATGTTGCAGGTCAAATTCTGTTATAGTATTGAGTTGATATGAGATATTTGTAATATTTTAGCTTTTGAGCCCCAGTCTTAATATGCTGAATGGTTTATGTGTACTGCATCTGCATGCCTCAGATTGTTCAGAGAAACAGAAAGTGTGAAGCATTAGCGAATGAGTCAATCACAGAAGTCATGTGATTTTTTTTACCTTGTTCTTAGCATGTGTTAGATAGTGCTAATAAAAGTAGAAACCAATATGATGATCGATGGATTTTGATTCATTCAGAGACAATAATTCAATAAAGAGATAATGAAAATATGCTTGCTAGTTCATTTGATCTCTGTTTGCCATTTTATCGCTTGTTTGTGTATTGCTGATATGCCAATGCCATATCACATTTCTAGTCCCAAAGCGTTATATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2603#0 GTGGGGGAACCTCGCCGGCGATCCCTCCAAAGCCCAGAAGCGACGCCGCCGCCGCCGCCG 60 consensus_2603#1 ------------------------------------------------------------ consensus_2603#0 CCAGCCGCCACGTTATCCATGAGGCCTCTCCTCGCCCGCCTCTTCGCCCCGACTTACATT 120 consensus_2603#1 ------------------ATGCGACTGCGACT-GCTCTGCGGGAGGCGAAGGAGGAGATT 41 *** * * * ** ** * * ** * * *** consensus_2603#0 GCCATGGGTTTCTC-CTCCTCCGCGTCGCCGCCGTCCCGGCGGCTTGCCCACCTCACACG 179 consensus_2603#1 GGGTTGGACCCTGCGCTTGTTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTC---CAAG 98 * *** * ** * * * * * ** * * * * * * * ** * consensus_2603#0 CCACCTCCTCCTCAGCTCCGGCGAGCTCTCCTCCTCGGTGGGCGCCCCCGCCGCCGCCGC 239 consensus_2603#1 GTAAACCCATTTTTTTTTCAA-GTACTCTTGGCATGGTTGCGAAATCTAGGTAATGTTAG 157 * ** * * * * **** * * * ** * * * * consensus_2603#0 CCGGCCGGCCTACCTCGCCGCCCCCAAGGGCT---ACGCCGCCGTGCTGGTCTGCCTCTT 296 consensus_2603#1 GTTATAGCTTTTACCTATGAATTTTAGTGGTTTGAATGTGCTTTTGTTACATTGCCTGTG 217 * * * * ** * * * ** * ***** * consensus_2603#0 CGAGGACCCCCACGGCGGCGACCCCCGCGTCATCCTCACCAAGCGCGCCGCCTCCCTCTC 356 consensus_2603#1 TGGG-------ATGGAAGTGAAAC---CATCGTCGATACAAAGAGGATCGGTAGTTAGTC 267 * * * ** * ** * * ** ** ** *** * ** ** consensus_2603#0 CTCCCACTCCGGGGAGGTGTCGCTGCCGGGAGGGAAGGTGGAGGAGGGG-GATGCGGATG 415 consensus_2603#1 GATCTAGT----GTAAATCCTACTGAATTGCAGGAAGTGGCAGTAGCTGTGCTGCCAGAG 323 * * * * * * *** * ***** * ** ** * * *** * consensus_2603#0 CGACGGCGACG----GCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCC-TGCGCT 470 consensus_2603#1 CAGCAGCTATATAGTGCATGTTGCAGGTCAAATTCTGTTATAGTATTGAGTTGATATGAG 383 * * ** * ** * * * ** * ** * *** * * consensus_2603#0 -TGTTTCTATTGTCACAGTTCTTGAGCCCT--TCTTGTCCAA--GAACGGACTCCATGTA 525 consensus_2603#1 ATATTTGTAATATTTTAGCTTTTGAGCCCCAGTCTTAATATGCTGAATGGTTTATGTGTA 443 * *** ** * * ** * ******** **** *** ** * **** consensus_2603#0 --ACTCCTGTAATCGGCA--TTCTTTCGGATAAAGCTTTATTCAAGCCTGTCTTGAATGA 581 consensus_2603#1 CTGCATCTGCATGCCTCAGATTGTTCAGAGAAACAGAAAGTGTGAAGCATTAGCGAATGA 503 * *** * * ** ** ** * ** * * * * ****** consensus_2603#0 ATCTGAAGTGGCAGACATCTTTGATGCACCTCTAGAGATGTTCCTGAAGGATGATAACCG 641 consensus_2603#1 GTC---AATCACAGAAGTCAT-GTGATTTTTTTTACCTTGTTCTTAGCATGTGTTAGATA 559 ** * * **** ** * * * * ***** * ** ** consensus_2603#0 GAAAACACAAGAATCGAATTGGATGGGCATGAATATTCCAGTCCAGTCTTTTGAGTACCA 701 consensus_2603#1 GTGCTAATAAAAGTAGAAACCAATATG-ATGATCGATGGATTTTGATTCATTCAGAGACA 618 * * ** * * *** ** * **** * * * * ** ** ** consensus_2603#0 GTCAGAGGACAAAACGTTTGTGATTTGGGGCTTAACGGCACACATTCTGACTCGTGCTGC 761 consensus_2603#1 ATAATTCAATAAAGAGATAATGAAAATATGCTTGCTAGTTCA---TTTGATCTCTGTTT- 674 * * * *** * * *** **** * ** * *** ** * consensus_2603#0 AGCAGTCGTTTTACCGAGAGAACCATCATTTGTTGAATTTCGACCAAGATATGTGAACTC 821 consensus_2603#1 ----GCCATTTTATCGCTTGT-TTGTGTATTGCTGATATGCCAATGCCATATCACATTTC 729 * * ***** ** * * *** *** * * * **** * ** consensus_2603#0 ACCCTCTGGAGATACGAATGAAACAAAACGCTGATGCAATACCATAATCGTCAATATGTA 881 consensus_2603#1 TAGTCCCAAAGCGTTATATAA--------------------------------------- 750 * ** ** * consensus_2603#0 ATTCTAGCATTTATCCCCTCCATTCAGAGGCAGCTGCTTGTGCCTGTCTATAGAAAATCA 941 consensus_2603#1 ------------------------------------------------------------ consensus_2603#0 GCTTACTGTACTTTTTGTATGTACACGATAGTCCATAGAATGTTGCATCATCAGCATGTT 1001 consensus_2603#1 ------------------------------------------------------------ consensus_2603#0 GGAAAATTTGT 1012 consensus_2603#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||