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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1382 fasta sequence
[CGTGGTGGCGGCGATGGAAGATGGAAGGCCGACGGTGTGGAGATGAAAAGGGGAGGTGCTCGGCGATGGCAGTGGCACGGGGGTCGGCAGCGATGGGGATCCGAAGGCGGAGTGGCTGTGGCAGTGGAGGAACGACGACGGCCGTGATGGTGGTGGCGAGCTGGCTCGGGAAGGTGAAGGTGAGGGATGCGATGGTGAACCGTAACGAGGACGACAAGGATGAATGGATGATGGTTTTGATGCTGCTAGCTTCCAGGGGAAGGAAGTTAGGCAGTACAGCGACGGCAACAGTGGCAGCGACAACGACACATGGTGAGGATCGTACCAGGTAGGTCTTCTCGCTGGTTTCCCATTTTCGGTGTGGACTCAGCTTGTGGGTTCCTTTTCATTGTTTCGTCGGTTGTGCTGAGGGCTCCGATGGACGGGGAGCACGGGTGCAGGGGAGGCCGTTGGGGCGGGGTCCTCGCCTCCTCGGCTTTGAAAGCCGTCGCTTTCTTGTGCGTGAATCCTGGGCGGCGGGGTGGAAGAGGATGAGGACGGCGGACGGCGTCGGTGTGGGCCGGTGGTCGTCATCGGCGCCGAGGAGTGGAGCACAAGGCAGGTTTGGCTTCCTGAACTTGGGCTCAGTTCGTTTGTCCATGTTCCCTACCCCTTCTCTCCGTTCTCCGCGCGCACGCTTTTCAAACTGTTAAACAAAGTGTTTTTTTTTAAAAAGTTTATATACGAAAGTTGCTTAAAAAATCATATTGATTCATTTTTTTTAAAAAAAATATCTAAAACTTAATTAATCACACGCTAAACACTGCTTCGTTTTGCGTGCTAGGGAGTGAGGGTTCTCTTTGTGGGGTCGTCTCTGTGATGGCATGGGTGTTGGGGTGGGGTTTTGTCCACAGGGGTTTATGGTGCATGAAAGCTGTTGTGTAGCTCCTCAGGGCATTAGATGGCCGTCCAAGTTGGTACAATACACTGCTCTGTCTTGCAGGCATTTGATCGAACACGTCCTGGGCATGCAGCTGAGCTGAGGGAGGCAAAACAGACTTTAGGCTGAAACGAGAGAGGGAGTGGGCTGGCAGTAAAAGGGAGTCCACTGTAATAGGAGCTTTTGTATCATTCTGGGATTTGTAGTTTAGGAAATTGAAAGGGGATTTGGATGGGGAAAACAACATGTGCATTTGGACTTATGATTCGACAGTGTAATTGTAATTTGACTCGGCTCTGTATAAATGGACTGCATAATATTTATTCTGGCCCTGTGTCTGGACTAGATATGGCTTGTATGGTTGTGGCTTGGACAACATTCTGTAATTGGGATTGTATAGATCGGACTTGTGATGTGGTTCTGTATATTCATAATTTGGACTCTGCAGGGTACTGTATGTTTG]
[+] EMBL AK071941 [CGTGGTGGCGGCGATGGAAGATGGAAGGCCGACGGTGTGGAGATGAAAAGGGGAGGTGCTCGGCGATGGCAGTGGCACGGGGGTCGGCAGCGATGGGGATCCGAAGGCGGAGTGGCTGTGGCAGTGGAGGAACGACGACGGCCGTGATGGTGGTGGCGAGCTGGCTCGGGAAGGTGAAGGTGAGGGATGCGATGGTGAACCGTAACGAGGACGACAAGGATGAATGGATGATGGTTTTGATGCTGCTAGCTTCCAGGGGAAGGAAGTTAGGCAGTACAGCGACGGCAACAGTGGCAGCGACAACGACACATGGTGAGGATCGTACCAGGTAGGTCTTCTCGCTGGTTTCCCATTTTCGGTGTGGACTCAGCTTGTGGGTTCCTTTTCATTGTTTCGTCGGTTGTGCTGAGGGCTCCGATGGACGGGGAGCACGGGTGCAGGGGAGGCCGTTGGGGCGGGGTCCTCGCCTCCTCGGCTTTGAAAGCCGTCGCTTTCTTGTGCGTGAATCCTGGGCGGCGGGGTGGAAGAGGATGAGGACGGCGGACGGCGTCGGTGTGGGCCGGTGGTCGTCATCGGCGCCGAGGAGTGGAGCACAAGGCAGGTTTGGCTTCCTGAACTTGGGCTCAGTTCGTTTGTCCATGTTCCCTACCCCTTCTCTCCGTTCTCCGCGCGCACGCTTTTCAAACTGTTAAACAAAGTGTTTTTTTTTAAAAAGTTTATATACGAAAGTTGCTTAAAAAATCATATTGATTCATTTTTTTTAAAAAAAATATCTAAAACTTAATTAATCACACGCTAAACACTGCTTCGTTTTGCGTGCTAGGGAGTGAGGGTTCTCTTTGTGGGGTCGTCTCTGTGATGGCATGGGTGTTGGGGTGGGGTTTTGTCCACAGGGGTTTATGGTGCATGAAAGCTGTTGTGTAGCTCCTCAGGGCATTAGATGGCCGTCCAAGTTGGTACAATACACTGCTCTGTCTTGCAGGCATTTGATCGAACACGTCCTGGGCATGCAGCTGAGCTGAGGGAGGCAAAACAGACTTTAGGCTGAAACGAGAGAGGGAGTGGGCTGGCAGTAAAAGGGAGTCCACTGTAATAGGAGCTTTTGTATCATTCTGGGATTTGTAGTTTAGGAAATTGAAAGGGGATTTGGATGGGGAAAACAACATGTGCATTTGGACTTATGATTCGACAGTGTAATTGTAATTTGACTCGGCTCTGTATAAATGGACTGCATAATATTTATTCTGGCCCTGTGTCTGGACTAGATATGGCTTGTATGGTTGTGGCTTGGACAACATTCTGTAATTGGGATTGTATAGATCGGACTTGTGATGTGGTTCTGTATATTCATAATTTGGACTCTGCAGGGTACTGTATGTTTG]
consensusID : consensus_2608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1000 fasta sequence
[TCCCCTCCCCCAAATCGCAGCGCCGCCTCCCCAAACCTGCTCGTTCTCTCGTGCGCCACCGTCCACCGTCGCCGAGCCGGTGCCATCGCCGTCCACCGTCGTCGGGCCGCGCCGCCGCCATCCACCGTCGCCGGGCCACGCCGCCGCCGTCCACCGTCGCCGGGCCGCGCCGCCGCGGTCAGCAGCCGTAGCGCCGCGGAGCAGCTGCAGCTCCGCCGTCGTCTCCGGCGGGCGCAGCGCCGCCGCCGTCAGCAGCTGCAGGCCTGCAGCTCCACGCGTCCGCCGTCGTCTCCGCCGGGCGCAGCGCCGCCGTCGTCAGCAGCTGCAAGCCGCTGGTAAATCTCCTCAGGTCTCCATCGTATTTGTTAGATTCAATAGATTTTAGAAGTGGAAGTAGTGGCGGTGGTAGCAATAATAGTGGCAATGTTGTTGGTGTCTTGGTGATGCATCAAGAGAGACGAACAACTAGTGGCAGTGGACCAACAATGGCTGGCAACATCTTAGAATGCTGTTCGTGTGATTCCACCCAATGATGATGAAAAGAAGCCCCCGTGGAGGGGATTGAGGAGATTGAGAAGATACGCAAAACGAGGGAGTGAGGGTTCTCTTTGTGGGGTCGTCTCTGTGATGGCATGGGTGTTGGGGTGGGGTTTTGTCCACAGGGGTTTATGGTGCATGAAAGCTGTTGTGTAGCTCCTCAGGGCATTAGATGGCCGTCCAAGTTGGTACAATACACTGCTCTGTCTTGCAGGCATTTGATCGAACACGTCCTGGGCATGCAGCTGAGCTGAGGGAGGCAAAACAGACTTTAGGCTGAAACGAGAGAGGGAGTGGGCTGGCAGTAAAAGGGAGTCCACTGTAATAGGAGCTTTTGTATCATTCTGGGATTTGTAGTTTAGGAAATTGAAAGGGGATTTGGATGGGGAAAACAACATGTGCATTTGGACTTATGATTCGACAGTGTAATTGTAATTTGACTCGGCTCTGTATAAATGGACTG]
[+] EMBL AK111130 [TCCCCTCCCCCAAATCGCAGCGCCGCCTCCCCAAACCTGCTCGTTCTCTCGTGCGCCACCGTCCACCGTCGCCGAGCCGGTGCCATCGCCGTCCACCGTCGTCGGGCCGCGCCGCCGCCATCCACCGTCGCCGGGCCACGCCGCCGCCGTCCACCGTCGCCGGGCCGCGCCGCCGCGGTCAGCAGCCGTAGCGCCGCGGAGCAGCTGCAGCTCCGCCGTCGTCTCCGGCGGGCGCAGCGCCGCCGCCGTCAGCAGCTGCAGGCCTGCAGCTCCACGCGTCCGCCGTCGTCTCCGCCGGGCGCAGCGCCGCCGTCGTCAGCAGCTGCAAGCCGCTGGTAAATCTCCTCAGGTCTCCATCGTATTTGTTAGATTCAATAGATTTTAGAAGTGGAAGTAGTGGCGGTGGTAGCAATAATAGTGGCAATGTTGTTGGTGTCTTGGTGATGCATCAAGAGAGACGAACAACTAGTGGCAGTGGACCAACAATGGCTGGCAACATCTTAGAATGCTGTTCGTGTGATTCCACCCAATGATGATGAAAAGAAGCCCCCGTGGAGGGGATTGAGGAGATTGAGAAGATACGCAAAACGAGGGAGTGAGGGTTCTCTTTGTGGGGTCGTCTCTGTGATGGCATGGGTGTTGGGGTGGGGTTTTGTCCACAGGGGTTTATGGTGCATGAAAGCTGTTGTGTAGCTCCTCAGGGCATTAGATGGCCGTCCAAGTTGGTACAATACACTGCTCTGTCTTGCAGGCATTTGATCGAACACGTCCTGGGCATGCAGCTGAGCTGAGGGAGGCAAAACAGACTTTAGGCTGAAACGAGAGAGGGAGTGGGCTGGCAGTAAAAGGGAGTCCACTGTAATAGGAGCTTTTGTATCATTCTGGGATTTGTAGTTTAGGAAATTGAAAGGGGATTTGGATGGGGAAAACAACATGTGCATTTGGACTTATGATTCGACAGTGTAATTGTAATTTGACTCGGCTCTGTATAAATGGACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2608#0 CGTGGTGGCGGCGATGGAAGATGGAAGGCCGACGGTGTGGAGATGAAAAGGGGAGGTGCT 60
consensus_2608#1 ------------------------------------------------------------
consensus_2608#0 CGGCGATGGCAGTGGCACGGGGGTCGGCAGCGATGGGGATCCGAAGGCGGAGTGGCTGTG 120
consensus_2608#1 ------------------------------------------------------------
consensus_2608#0 GCAGTGGAGGAACGACGACGGCCGTGATGGTGGTGGCGAGCTGGCTCGGGAAGGTGAAGG 180
consensus_2608#1 ------------------------------------------------------------
consensus_2608#0 TGAGGGATGCGATGGTGAACCGTAACGAGGACGACAAGGATGAATGGATGATGGTTTTGA 240
consensus_2608#1 ----------------------------------------TCCCCTCCCCCAAATCGCAG 20
* *
consensus_2608#0 TGCTGCTAGCTTCCAGGGGAAGGAAGTTAGGCAGTACAGCGACGGCAACAGTGGCAGCGA 300
consensus_2608#1 CGCCGC---CTCCCCAAACCTGCTCGTTCTCTCGTGCGCCACCGTCCACCGTCGCCGAGC 77
** ** ** ** * *** ** * * ** * ** ** ** * *
consensus_2608#0 CAACGACACATGGTGAGGATCGTACCAGGTAGGTCTTCTCGCTGGTTTCCCATTTTCGGT 360
consensus_2608#1 CGGTGCCAT-CGCCGTCCACCGTC---GTCGGGCCGCGCCGCCG-CCATCCACCGTCGCC 132
* * ** * * * *** * ** * *** * *** ***
consensus_2608#0 GTGGACTCAGCTTGTGGGTTCCTTTTCATTGTTTCGT-CGGTTGTGCTGAGGGCTCCGAT 419
consensus_2608#1 G-GGCCACGCCGCCGCCGTCCACCGTCGCCGGGCCGCGCCGCCGCGGTCAGCAGCCGTAG 191
* ** * * * ** * ** * ** * * * * * ** * *
consensus_2608#0 GGACGGGGAGCACGGGTGCAGGGGAGGCCGT-TGGGGCGGGGTCCTCGCCTCCTCGGCTT 478
consensus_2608#1 CGCCGCGGAGCAGCTGCAGCTCCGCCGTCGTCTCCGGCGGGCGCAGCGCCGCC--GCCGT 249
* ** ****** * * * *** * ****** * **** ** * * *
consensus_2608#0 TGAAAGCCGTCGCTTTCTTG-TGCGTGAATCCTGGGCGGCGGGGTGGAAGAGGATGAGGA 537
consensus_2608#1 CAGCAGCTGCAGGCCTGCAGCTCCACGCGTCC---GCCGTCGTCTCCGCCGGGCGCAGCG 306
*** * * * * * * * *** ** * * * ** **
consensus_2608#0 CGGCGGACGGCGTCGG-TGTGGGCCGGTGGTCGTCATCGGCGCCGAGGAGTGGAGCACAA 596
consensus_2608#1 CCGCCGTCGTCAGCAGCTGCAAGCCGCTGGTAA--ATCTCCTCAGGTCTCCATCGTATTT 364
* ** * ** * * * ** **** **** *** * * * * *
consensus_2608#0 GGCAGGTT---TGGCTTCCTGAACTTGGGCTCAGTTCGTTTGTCCATGTTCCCTACCCCT 653
consensus_2608#1 GTTAGATTCAATAGATTTTAGAAGTGGAAGTAGTGGCGGTGGTAGCAATAATAGTGGCAA 424
* ** ** * * ** *** * * * ** * ** * *
consensus_2608#0 TCTCTCCGTTCTCCGCGCGCACGCTTTTCAAACTGTTAAACAAAGTGTTTTTTTTTAAAA 713
consensus_2608#1 TGTTGTTGGTGTCTTGGTG-ATGCATCA-AGAGAGACGAACAACTAGTGGCAGTGGACCA 482
* * * * ** * * * ** * * * * ***** ** * * *
consensus_2608#0 AGTTTATATACGAAAGTTGCTTAAAAAATCATATTGATTCATTTTTTTTAAAAAAAATAT 773
consensus_2608#1 A--CAATGGCTGGCAACATCTTAGAATGCTGT-TCGTGTGATTCCACCCAATGATGATGA 539
* ** * * **** ** * * * * *** ** * **
consensus_2608#0 CTAAAA--CTTAATTAATCACACGCTAAACACTGCTTCGTTTTGCGTG-CTAGGGAGTGA 830
consensus_2608#1 AAAGAAGCCCCCGTGGAGGGGATTGAGGAGATTGAGAAGATACGCAAAACGAGGGAGTGA 599
* ** * * * * * * ** * * ** * *********
consensus_2608#0 GGGTTCTCTTTGTGGGGTCGTCTCTGTGATGGCATGGGTGTTGGGGTGGGGTTTTGTCCA 890
consensus_2608#1 GGGTTCTCTTTGTGGGGTCGTCTCTGTGATGGCATGGGTGTTGGGGTGGGGTTTTGTCCA 659
************************************************************
consensus_2608#0 CAGGGGTTTATGGTGCATGAAAGCTGTTGTGTAGCTCCTCAGGGCATTAGATGGCCGTCC 950
consensus_2608#1 CAGGGGTTTATGGTGCATGAAAGCTGTTGTGTAGCTCCTCAGGGCATTAGATGGCCGTCC 719
************************************************************
consensus_2608#0 AAGTTGGTACAATACACTGCTCTGTCTTGCAGGCATTTGATCGAACACGTCCTGGGCATG 1010
consensus_2608#1 AAGTTGGTACAATACACTGCTCTGTCTTGCAGGCATTTGATCGAACACGTCCTGGGCATG 779
************************************************************
consensus_2608#0 CAGCTGAGCTGAGGGAGGCAAAACAGACTTTAGGCTGAAACGAGAGAGGGAGTGGGCTGG 1070
consensus_2608#1 CAGCTGAGCTGAGGGAGGCAAAACAGACTTTAGGCTGAAACGAGAGAGGGAGTGGGCTGG 839
************************************************************
consensus_2608#0 CAGTAAAAGGGAGTCCACTGTAATAGGAGCTTTTGTATCATTCTGGGATTTGTAGTTTAG 1130
consensus_2608#1 CAGTAAAAGGGAGTCCACTGTAATAGGAGCTTTTGTATCATTCTGGGATTTGTAGTTTAG 899
************************************************************
consensus_2608#0 GAAATTGAAAGGGGATTTGGATGGGGAAAACAACATGTGCATTTGGACTTATGATTCGAC 1190
consensus_2608#1 GAAATTGAAAGGGGATTTGGATGGGGAAAACAACATGTGCATTTGGACTTATGATTCGAC 959
************************************************************
consensus_2608#0 AGTGTAATTGTAATTTGACTCGGCTCTGTATAAATGGACTGCATAATATTTATTCTGGCC 1250
consensus_2608#1 AGTGTAATTGTAATTTGACTCGGCTCTGTATAAATGGACTG------------------- 1000
*****************************************
consensus_2608#0 CTGTGTCTGGACTAGATATGGCTTGTATGGTTGTGGCTTGGACAACATTCTGTAATTGGG 1310
consensus_2608#1 ------------------------------------------------------------
consensus_2608#0 ATTGTATAGATCGGACTTGTGATGTGGTTCTGTATATTCATAATTTGGACTCTGCAGGGT 1370
consensus_2608#1 ------------------------------------------------------------
consensus_2608#0 ACTGTATGTTTG 1382
consensus_2608#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||