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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 937 fasta sequence
[GATAGTGTGCATTATGATGGAACCTTCATGCGTATATACATATAATCATTTACTGAGATATATATGTTCTGATGAGCATTGAGCTAAGTATACTCAACATGAATATAACCTGGCAGGCTAATTAATATAAATTCGGTGTTCTCACAATGTTGCATTGGAGCTATATGTATAGTTGCTAATAATTAATCCACCAATGTGGAAATGAGGATCCTGAGCTGGCATACAATTAATCTATCTTTTTTTTTCTACTTCGTGTAGTACACTAGTAAAAGTAGGCAGTGCTAGCTGGGAGTACTCCTCTTTCACAGGTCTTGTGTTTGTTTCGGGGTCGGGATAGAACCAATTCATGTGTCATATGGCAGGTAATGGTGAATTTTTCTAGGAAGAGGAGACAAGCAATGGCGTGGTTTCATATATGTATATAACAGATGTCACAGGTTTACTGTTCACGATTATGTCTGAATTGCCAGAAGTGCATGATCAGTACATGCCTGTAAGATTTGTCTCGTCATGACCTATTTATAGCTGTCATAGAAAAAAAAACTACAAGACAACGAAGGTACGTATGTTTGTACTGCATATTGTTAACAAGTTAATCAAGTTTACTTTTAGGCGTTATGGGGTACAGCTGTAGCTTCTTGTTGGTCTAGCATTGATCAACCATTCTTAGCGGTAGTCGGTTTGTTACTATACTAGCCCTTTTCTCAGTAGTGTGGGAAGGCGTCAGTGCGTAGTGGAGGTGTTTTTTTTTTTCTTTTCTGGACTATAACCTCCTAGTTGTAGTTCTGTAATTTTTTTTTCTTGTTACATCCAATGAAACTTCATATTGTCTAAGTGTCGGTTCATTGGAAGAAAACATCATCAAGTATACTTTTATGTTGTGAAATAGGAGTAGCAAAACTGAGGAAAATGTTCCTATCAGTACAAATAAGACTTC]
[+] EMBL AK062294 [GATAGTGTGCATTATGATGGAACCTTCATGCGTATATACATATAATCATTTACTGAGATATATATGTTCTGATGAGCATTGAGCTAAGTATACTCAACATGAATATAACCTGGCAGGCTAATTAATATAAATTCGGTGTTCTCACAATGTTGCATTGGAGCTATATGTATAGTTGCTAATAATTAATCCACCAATGTGGAAATGAGGATCCTGAGCTGGCATACAATTAATCTATCTTTTTTTTTCTACTTCGTGTAGTACACTAGTAAAAGTAGGCAGTGCTAGCTGGGAGTACTCCTCTTTCACAGGTCTTGTGTTTGTTTCGGGGTCGGGATAGAACCAATTCATGTGTCATATGGCAGGTAATGGTGAATTTTTCTAGGAAGAGGAGACAAGCAATGGCGTGGTTTCATATATGTATATAACAGATGTCACAGGTTTACTGTTCACGATTATGTCTGAATTGCCAGAAGTGCATGATCAGTACATGCCTGTAAGATTTGTCTCGTCATGACCTATTTATAGCTGTCATAGAAAAAAAAACTACAAGACAACGAAGGTACGTATGTTTGTACTGCATATTGTTAACAAGTTAATCAAGTTTACTTTTAGGCGTTATGGGGTACAGCTGTAGCTTCTTGTTGGTCTAGCATTGATCAACCATTCTTAGCGGTAGTCGGTTTGTTACTATACTAGCCCTTTTCTCAGTAGTGTGGGAAGGCGTCAGTGCGTAGTGGAGGTGTTTTTTTTTTTCTTTTCTGGACTATAACCTCCTAGTTGTAGTTCTGTAATTTTTTTTTCTTGTTACATCCAATGAAACTTCATATTGTCTAAGTGTCGGTTCATTGGAAGAAAACATCATCAAGTATACTTTTATGTTGTGAAATAGGAGTAGCAAAACTGAGGAAAATGTTCCTATCAGTACAAATAAGACTTC]
consensusID : consensus_264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[TTTTTTTTTTTTTCAGAAAATGATTATATGTATATACCCATGAAGGTTCCATCATAATGCACACTATCTTCTATATATGCAAAATCCTAGGCTACCTCCTAGATAGCTAAAGAATATAAATTACTTGTATATTGAGGATTCAGCTTGTGTTACACTGCTAGCTATTCAAAAAGCAGCATTAACATTTGGTCCCGAGCTTTTTTTTGTCTCCAATCACCGGGGTATACATTCATAGAATGTTTCAAAACTTGATTGGAATAGCACATGCAAGGAGATAAAATTGCAAACTTACCGCTGTCTACTCGCTAGACAAGATGATCAGTCGCATGTGTCCTGTATTAATGGATGAAGAAACAAAAGGGAGAAGACAACTACCAAAACGAATGAACAAATATAGATCGTGGATGGTATTTATGATATTACCTGTAATGCTTTATAGCATTTGTCCTTCTGAATTGAAAGAACAAATCTGCACAGATATTATATATAGACGGAGGTTTTATGTGCATCAAGGAAGAAATTAAATGTATGAGTAAAAGCTGTATATGTTCCTCATGAACTTCTTCCACACTTGAACAATAAACACATCANAATCTTCTCTGAAATCACGAGTTAATACCTTGAGAGTTTCGCTTGTGCGTCGTATATGTAAACTTAGGGAACAAGAAACAGTTGTTAGATCAACAATTTATC]
[+] EMBL CA760585 [TTTTTTTTTTTTTCAGAAAATGATTATATGTATATACCCATGAAGGTTCCATCATAATGCACACTATCTTCTATATATGCAAAATCCTAGGCTACCTCCTAGATAGCTAAAGAATATAAATTACTTGTATATTGAGGATTCAGCTTGTGTTACACTGCTAGCTATTCAAAAAGCAGCATTAACATTTGGTCCCGAGCTTTTTTTTGTCTCCAATCACCGGGGTATACATTCATAGAATGTTTCAAAACTTGATTGGAATAGCACATGCAAGGAGATAAAATTGCAAACTTACCGCTGTCTACTCGCTAGACAAGATGATCAGTCGCATGTGTCCTGTATTAATGGATGAAGAAACAAAAGGGAGAAGACAACTACCAAAACGAATGAACAAATATAGATCGTGGATGGTATTTATGATATTACCTGTAATGCTTTATAGCATTTGTCCTTCTGAATTGAAAGAACAAATCTGCACAGATATTATATATAGACGGAGGTTTTATGTGCATCAAGGAAGAAATTAAATGTATGAGTAAAAGCTGTATATGTTCCTCATGAACTTCTTCCACACTTGAACAATAAACACATCANAATCTTCTCTGAAATCACGAGTTAATACCTTGAGAGTTTCGCTTGTGCGTCGTATATGTAAACTTAGGGAACAAGAAACAGTTGTTAGATCAACAATTTATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_264#0 GATAGTGTGCATTATGATGGAACCTTCATGCGTATATACATATAATCATTT-ACTGAGAT 59
consensus_264#1 --TTTTTTTTTTTTTCAGAAAATGATTATATGTATATACCCATGAAGGTTCCATCATAAT 58
* * * ** * * ** * ** ******** ** * ** * **
consensus_264#0 ATATATGTTCTGATGAGCATTGAGCTAAGTATACTCAACATGAATATAACCTGGCAGGCT 119
consensus_264#1 GCACACTATCTTCTATATAT---GCAAAAT---CCTA----GGCTACCTCCTAGATAGCT 108
* * *** * ** ** ** * * * * ** *** * ***
consensus_264#0 AATTAATATAAATTCGGTGTTCTCACAATGTTGCATTGGAGCTATATGTATAGTTGCT-A 178
consensus_264#1 AAAGAATATAAATTACTTGTATATTGAGGATTCAGCTTGTGTTACACTGCTAGCTATTCA 168
** ********** *** * ** * * * ** * *** * * *
consensus_264#0 ATAATTAATCCACCAATGTGGAAATGAGGATCCTGAGCTGGCATACAATTAATCTATCTT 238
consensus_264#1 AAAAGCAGCATTAACATTTGGTCCCGAGCTTTTT---TTTGTCTCCAATCA-CCGGGGTA 224
* ** * ** *** *** * * * * * **** * * *
consensus_264#0 TTTTTTTCTACTTCGTGTAGTACACTAGTAAAAGTAGGCAGTGCTAGCTGGGAGTACTCC 298
consensus_264#1 TACATTCATAGAATGTTTCAAAACTTGATTGGAATAGCACATGCAAGGAGATAAAATTGC 284
* ** ** ** * * * * * *** *** ** * * * * *
consensus_264#0 TCTTTCACAGGTCTTGTGTTTGTTTCGGGGTCGGGATAGAACCAATTCATGTGTCATATG 358
consensus_264#1 AAACTTACCG-----CTGTCTACTCGCTAGACAAGAT-GATCAGTCGCATGTGTCCTGTA 338
* ** * *** * * * * *** ** * ******** * *
consensus_264#0 GCAGGTAATGGTGAATTTTTCTAGGAAGAGGAGACAAGCAATGGCGTGGTTTCATATATG 418
consensus_264#1 TTAATGGATGAAGAAA----CAAAAGGGAGAAGACAACTACCAAAACGAATGAACAAATA 394
* *** *** * * *** ****** * * * * * **
consensus_264#0 TATATAACAGATGTCACAGGTT-TACTGTTCACGATTATGTCTGA-ATTGCCAGAAGTGC 476
consensus_264#1 TAGATCGTGGATGGTATTTATGATATTACCTGTAATGCTTTATAGCATTTGTCCTTCTGA 454
** ** **** * * ** * ** * * * *** **
consensus_264#0 ATGATCAGTACATGCCTGTA-AGAT-TTGTCTCGTCATGACCTATTTATAGCTGTCATAG 534
consensus_264#1 ATTGAAAGAACAAATCTGCACAGATATTATATATAGACGGAGGTTTTATGTGCATCAAGG 514
** ** *** *** * **** ** * * * * ***** *** *
consensus_264#0 AAAAAAA-AACTACAAGACAACGAAGGTACGTATGTTTGTACTGCATATTGTTAACAAGT 593
consensus_264#1 AAGAAATTAAATGTATGAGTA-AAAGCTGTATATGTTCCTCATGAACTTCTTCCACACTT 573
** *** ** * * ** * *** * ****** * ** * * * *** *
consensus_264#0 TAATCAAGTTTACTTTTAGGCGTTATGGGGTACAGCTG--TAGCTTCTTGTTGGTCTAGC 651
consensus_264#1 GAACAATAAACACATCANAATCTTCTCTGAAATCACGAGTTAATACCTTGAGAGTTTCGC 633
** * ** * ** * * * * ** **** ** * **
consensus_264#0 ------ATTGATCAACCATTCTTAGCGGTAGTCGGTTTGTTACTATACTAGCCCTTTTCT 705
consensus_264#1 TTGTGCGTCGTATATGTAAACTTAGGGAACAAGAAACAGTTGTTAGATCAACAATTTATC 693
* * * * ***** * *** ** * * * ***
consensus_264#0 CAGTAGTGTGGGAAGGCGTCAGTGCGTAGTGGAGGTGTTTTTTTTTTTCTTTTCTGGACT 765
consensus_264#1 ------------------------------------------------------------
consensus_264#0 ATAACCTCCTAGTTGTAGTTCTGTAATTTTTTTTTCTTGTTACATCCAATGAAACTTCAT 825
consensus_264#1 ------------------------------------------------------------
consensus_264#0 ATTGTCTAAGTGTCGGTTCATTGGAAGAAAACATCATCAAGTATACTTTTATGTTGTGAA 885
consensus_264#1 ------------------------------------------------------------
consensus_264#0 ATAGGAGTAGCAAAACTGAGGAAAATGTTCCTATCAGTACAAATAAGACTTC 937
consensus_264#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||