These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [AAAAGAACTACTACTTCAGTAGCTCATCTACATAAATTTTCCTCAATTTTACAACTACAAAGCTACAGCTAGAACAAAGTTGGAACGTTTCTGCTACAGCAAGCTAGGTGAGACTGAAAATTGTTCAAATCAAAGCTAGCTAAGCTAGGCGAGGCCACCGCAATGGCAAATTGGCGATTGCAAATGCACAGATGTGATGGCCGTCACGCCTGCTTCACGGCGGGGGCGTTGCCGGCGTCTGCTGCTCCCGGCGGAGACGGCTTCTGCTCGACGGAGGGGGAGGACGCGTGAGGGAACGGCGGCGGCGGCGGCGGCGGACCGAACATGGACATCGGCGGCGCGGCGGGGAACATCGGGCAAGGGAACTGCGCGGCGGAGGACATGCCCAACCCGGACAACCCCATGGGGGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCACAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGTCATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCGGATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAAGGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGATGATGTCGATGGGGACGGGGATGTT] [+] EMBL CB678499 [AAAAGAACTACTACTTCAGTAGCTCATCTACATAAATTTTCCTCAATTTTACAACTACAAAGCTACAGCTAGAACAAAGTTGGAACGTTTCTGCTACAGCAAGCTAGGTGAGACTGAAAATTGTTCAAATCAAAGCTAGCTAAGCTAGGCGAGGCCACCGCAATGGCAAATTGGCGATTGCAAATGCACAGATGTGATGGCCGTCACGCCTGCTTCACGGCGGGGGCGTTGCCGGCGTCTGCTGCTCCCGGCGGAGACGGCTTCTGCTCGACGGAGGGGGAGGACGCGTGAGGGAACGGCGGCGGCGGCGGCGGCGGACCGAACATGGACATCGGCGGCGCGGCGGGGAACATCGGGCAAGGGAACTGCGCGGCGGAGGACATGCCCAACCCGGACAACCCCATGGGGGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCACAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGTCATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCGGATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAAGGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGATGATGTCGATGGGGACGGGGATGTT] consensusID : consensus_2642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [ACCGTCCCCTTCGAGTCGACGGTGGTGCAGGCGGCGACGAACCGGCTGAGAAGCACCCCGCTCTTCTCCGACCAGAGGATGGCATGGCTGCACCCGCCCAAGCCGTCGCCACGCGCCGCCGCACCGCCGCCGCCGCCGCCTCTGGCCCCTACCACTCGGCACCGACTCGACACCGCCGCCGCGACGGCGACGGTGGCGCAGAGGTTGCCGCCGTCCGAGGCAAGAGCTCCCGACGCGCCCCCGCCTGCCGCGACCGCGACGGCGACGACCTCGTCCGTCTGCTCCGGCAACGGCGACCGGAGACAGCTCAATTGGAGGGACAGCCACAACAACCAGTCCGCCGAGTGGTCGGCCAGTCAAGACGAGCTGGACCTCGACGACGAGCTCGCAGGCGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCACAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGTCATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCGGATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAAGGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGATGATGTCGATGGGGACGGGGATGTT] [+] EMBL CB678498 [ACCGTCCCCTTCGAGTCGACGGTGGTGCAGGCGGCGACGAACCGGCTGAGAAGCACCCCGCTCTTCTCCGACCAGAGGATGGCATGGCTGCACCCGCCCAAGCCGTCGCCACGCGCCGCCGCACCGCCGCCGCCGCCGCCTCTGGCCCCTACCACTCGGCACCGACTCGACACCGCCGCCGCGACGGCGACGGTGGCGCAGAGGTTGCCGCCGTCCGAGGCAAGAGCTCCCGACGCGCCCCCGCCTGCCGCGACCGCGACGGCGACGACCTCGTCCGTCTGCTCCGGCAACGGCGACCGGAGACAGCTCAATTGGAGGGACAGCCACAACAACCAGTCCGCCGAGTGGTCGGCCAGTCAAGACGAGCTGGACCTCGACGACGAGCTCGCAGGCGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCACAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGTCATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCGGATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAAGGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGATGATGTCGATGGGGACGGGGATGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2642#0 AAAAGAACTACTACTTCAGTAGCTCATCTACATAAATTTTCCTCAATTTTACAA-CTACA 59 consensus_2642#1 ----------------------ACCGTCCCCTTCGAG--TCGACGGTGGTGCAGGCGGCG 36 * ** * * * ** * * * ** * * consensus_2642#0 AAGCTACAGCTAGAACAAAGTTGGAACGTTTCTGCTACAGCAAGCTAGGTGAGACTGAAA 119 consensus_2642#1 ACGAACCGGCTGAGAAGCACCCCG--CTCTTCTCCGACCAGAGGAT-GGCATGGCTGCAC 93 * * * *** * * * * **** * ** * * * ** * *** * consensus_2642#0 ATTGTTCAAATCAAAGCTAGCTAAGCTAGGCGAGGCCACCGCAATGGCAAATTGGCGATT 179 consensus_2642#1 -CCGCCCAAGCCGTCGCCA-CGCGCCGCCGCACCGCCGCCGCCGCCGCCT-CTGGCCCCT 150 * *** * ** * * * ** *** **** ** **** * consensus_2642#0 GCAAAT--GCACAGATGTGATG--GCCGTCACGCCTGCTTCA-CGGCGGGGGCGTTGCCG 234 consensus_2642#1 ACCACTCGGCACCGACTCGACACCGCCGCCGCGACGGCGACGGTGGCGCAGAGGTTGCCG 210 * * * **** ** ** **** * ** * ** * **** * ******* consensus_2642#0 GCGTCTGCTGCTCCCGGCGGAGACG-GCTTCTGCTCGACG-GAGGGGGAGGACG-CGTGA 291 consensus_2642#1 CCGTCCGAGGCAAGAGCTCCCGACGCGCCCCCGCCTGCCGCGACCGCGACGGCGACGACC 270 **** * ** * **** ** * ** * ** ** * ** * ** ** consensus_2642#0 GGGAACGGCGGCGGCGGCGGCGGCGGACCGAACATGGAC--ATCGGCGGCGCGGCGGGGA 349 consensus_2642#1 TCGTCCGTCTGCTCCGGCAACGGCG-ACCGGAGACAGCTCAATTGGAGGGACAGCCACAA 329 * ** * ** **** ***** **** * * * ** ** ** * ** * consensus_2642#0 ACATCGGGCAAGGGAACTGCGCGGCGG--AGGACATGCCCAACCCGGACAAC---CCCAT 404 consensus_2642#1 CAACCAGTCCGCCGAGTGGTCGGCCAGTCAAGACGAGCTGGACCTCGACGACGAGCTCGC 389 * * * * ** * * * * * *** ** *** *** ** * * consensus_2642#0 GGGGGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCA 464 consensus_2642#1 AGGCGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCA 449 ** ******************************************************** consensus_2642#0 CAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGT 524 consensus_2642#1 CAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGT 509 ************************************************************ consensus_2642#0 CATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCG 584 consensus_2642#1 CATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCG 569 ************************************************************ consensus_2642#0 GATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAA 644 consensus_2642#1 GATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAA 629 ************************************************************ consensus_2642#0 GGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGAT 704 consensus_2642#1 GGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGAT 689 ************************************************************ consensus_2642#0 GATGTCGATGGGGACGGGGATGTT 728 consensus_2642#1 GATGTCGATGGGGACGGGGATGTT 713 ************************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||