cluster # 2642

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Oryza sativa
cluster # 2642 cluster # 2642 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2642#0 length = 728 sequences # 1

consensus_2642#1 length = 713 sequences # 1

consensusID : consensus_2642#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 728
fasta sequence

                              [AAAAGAACTACTACTTCAGTAGCTCATCTACATAAATTTTCCTCAATTTTACAACTACAAAGCTACAGCTAGAACAAAGTTGGAACGTTTCTGCTACAGCAAGCTAGGTGAGACTGAAAATTGTTCAAATCAAAGCTAGCTAAGCTAGGCGAGGCCACCGCAATGGCAAATTGGCGATTGCAAATGCACAGATGTGATGGCCGTCACGCCTGCTTCACGGCGGGGGCGTTGCCGGCGTCTGCTGCTCCCGGCGGAGACGGCTTCTGCTCGACGGAGGGGGAGGACGCGTGAGGGAACGGCGGCGGCGGCGGCGGCGGACCGAACATGGACATCGGCGGCGCGGCGGGGAACATCGGGCAAGGGAACTGCGCGGCGGAGGACATGCCCAACCCGGACAACCCCATGGGGGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCACAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGTCATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCGGATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAAGGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGATGATGTCGATGGGGACGGGGATGTT]

[+] EMBL CB678499             [AAAAGAACTACTACTTCAGTAGCTCATCTACATAAATTTTCCTCAATTTTACAACTACAAAGCTACAGCTAGAACAAAGTTGGAACGTTTCTGCTACAGCAAGCTAGGTGAGACTGAAAATTGTTCAAATCAAAGCTAGCTAAGCTAGGCGAGGCCACCGCAATGGCAAATTGGCGATTGCAAATGCACAGATGTGATGGCCGTCACGCCTGCTTCACGGCGGGGGCGTTGCCGGCGTCTGCTGCTCCCGGCGGAGACGGCTTCTGCTCGACGGAGGGGGAGGACGCGTGAGGGAACGGCGGCGGCGGCGGCGGCGGACCGAACATGGACATCGGCGGCGCGGCGGGGAACATCGGGCAAGGGAACTGCGCGGCGGAGGACATGCCCAACCCGGACAACCCCATGGGGGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCACAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGTCATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCGGATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAAGGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGATGATGTCGATGGGGACGGGGATGTT]




>consensus_2642#0
AAAAGAACTACTACTTCAGTAGCTCATCTACATAAATTTTCCTCAATTTTACAACTACAA
AGCTACAGCTAGAACAAAGTTGGAACGTTTCTGCTACAGCAAGCTAGGTGAGACTGAAAA
TTGTTCAAATCAAAGCTAGCTAAGCTAGGCGAGGCCACCGCAATGGCAAATTGGCGATTG
CAAATGCACAGATGTGATGGCCGTCACGCCTGCTTCACGGCGGGGGCGTTGCCGGCGTCT
GCTGCTCCCGGCGGAGACGGCTTCTGCTCGACGGAGGGGGAGGACGCGTGAGGGAACGGC
GGCGGCGGCGGCGGCGGACCGAACATGGACATCGGCGGCGCGGCGGGGAACATCGGGCAA
GGGAACTGCGCGGCGGAGGACATGCCCAACCCGGACAACCCCATGGGGGTCCACCGGAGG
TCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCACAACCTGTCAGAGCGG
GTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGTCATGACGTCATCTCAT
CTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCGGATCAACGAGAAGATG
CGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAAGGCGTCGATGCTGGAG
GAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGATGATGTCGATGGGGACG
GGGATGTT

consensusID : consensus_2642#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence

                              [ACCGTCCCCTTCGAGTCGACGGTGGTGCAGGCGGCGACGAACCGGCTGAGAAGCACCCCGCTCTTCTCCGACCAGAGGATGGCATGGCTGCACCCGCCCAAGCCGTCGCCACGCGCCGCCGCACCGCCGCCGCCGCCGCCTCTGGCCCCTACCACTCGGCACCGACTCGACACCGCCGCCGCGACGGCGACGGTGGCGCAGAGGTTGCCGCCGTCCGAGGCAAGAGCTCCCGACGCGCCCCCGCCTGCCGCGACCGCGACGGCGACGACCTCGTCCGTCTGCTCCGGCAACGGCGACCGGAGACAGCTCAATTGGAGGGACAGCCACAACAACCAGTCCGCCGAGTGGTCGGCCAGTCAAGACGAGCTGGACCTCGACGACGAGCTCGCAGGCGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCACAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGTCATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCGGATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAAGGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGATGATGTCGATGGGGACGGGGATGTT]

[+] EMBL CB678498             [ACCGTCCCCTTCGAGTCGACGGTGGTGCAGGCGGCGACGAACCGGCTGAGAAGCACCCCGCTCTTCTCCGACCAGAGGATGGCATGGCTGCACCCGCCCAAGCCGTCGCCACGCGCCGCCGCACCGCCGCCGCCGCCGCCTCTGGCCCCTACCACTCGGCACCGACTCGACACCGCCGCCGCGACGGCGACGGTGGCGCAGAGGTTGCCGCCGTCCGAGGCAAGAGCTCCCGACGCGCCCCCGCCTGCCGCGACCGCGACGGCGACGACCTCGTCCGTCTGCTCCGGCAACGGCGACCGGAGACAGCTCAATTGGAGGGACAGCCACAACAACCAGTCCGCCGAGTGGTCGGCCAGTCAAGACGAGCTGGACCTCGACGACGAGCTCGCAGGCGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCACAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGTCATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCGGATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAAGGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGATGATGTCGATGGGGACGGGGATGTT]




>consensus_2642#1
ACCGTCCCCTTCGAGTCGACGGTGGTGCAGGCGGCGACGAACCGGCTGAGAAGCACCCCG
CTCTTCTCCGACCAGAGGATGGCATGGCTGCACCCGCCCAAGCCGTCGCCACGCGCCGCC
GCACCGCCGCCGCCGCCGCCTCTGGCCCCTACCACTCGGCACCGACTCGACACCGCCGCC
GCGACGGCGACGGTGGCGCAGAGGTTGCCGCCGTCCGAGGCAAGAGCTCCCGACGCGCCC
CCGCCTGCCGCGACCGCGACGGCGACGACCTCGTCCGTCTGCTCCGGCAACGGCGACCGG
AGACAGCTCAATTGGAGGGACAGCCACAACAACCAGTCCGCCGAGTGGTCGGCCAGTCAA
GACGAGCTGGACCTCGACGACGAGCTCGCAGGCGTCCACCGGAGGTCGGCGGCGAGGAGC
TCCAAGCGCAGCCGCACCGCCGAAGTCCACAACCTGTCAGAGCGGGTAAGCACACACACC
ATGCACCATCCACAACACCCGCGTCGTGTCATGACGTCATCTCATCTCGCCATTGAATTG
CTTTCGAGCTCGCAGAGGAGAAGAGACCGGATCAACGAGAAGATGCGGGCGCTGCAAGAG
CTCATCCCAAACTGCAACAAGATTGACAAGGCGTCGATGCTGGAGGAAGCCATCGAGTAC
CTCAAGACGCTGCAGCTGCAGGTGCAGATGATGTCGATGGGGACGGGGATGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2642#0      AAAAGAACTACTACTTCAGTAGCTCATCTACATAAATTTTCCTCAATTTTACAA-CTACA 59
consensus_2642#1      ----------------------ACCGTCCCCTTCGAG--TCGACGGTGGTGCAGGCGGCG 36
                                              * **  * *  *   **  *  *  * **  *  * 

consensus_2642#0      AAGCTACAGCTAGAACAAAGTTGGAACGTTTCTGCTACAGCAAGCTAGGTGAGACTGAAA 119
consensus_2642#1      ACGAACCGGCTGAGAAGCACCCCG--CTCTTCTCCGACCAGAGGAT-GGCATGGCTGCAC 93
                      * *   * ***   *   *    *  *  **** * **   * * * **   * *** * 

consensus_2642#0      ATTGTTCAAATCAAAGCTAGCTAAGCTAGGCGAGGCCACCGCAATGGCAAATTGGCGATT 179
consensus_2642#1      -CCGCCCAAGCCGTCGCCA-CGCGCCGCCGCACCGCCGCCGCCGCCGCCT-CTGGCCCCT 150
                         *  ***  *   ** * *    *   **   *** ****    **    ****   *

consensus_2642#0      GCAAAT--GCACAGATGTGATG--GCCGTCACGCCTGCTTCA-CGGCGGGGGCGTTGCCG 234
consensus_2642#1      ACCACTCGGCACCGACTCGACACCGCCGCCGCGACGGCGACGGTGGCGCAGAGGTTGCCG 210
                       * * *  **** **   **    **** * ** * **  *   ****  *  *******

consensus_2642#0      GCGTCTGCTGCTCCCGGCGGAGACG-GCTTCTGCTCGACG-GAGGGGGAGGACG-CGTGA 291
consensus_2642#1      CCGTCCGAGGCAAGAGCTCCCGACGCGCCCCCGCCTGCCGCGACCGCGACGGCGACGACC 270
                       **** *  **    *     **** **  * **  * ** **  * ** * ** **   

consensus_2642#0      GGGAACGGCGGCGGCGGCGGCGGCGGACCGAACATGGAC--ATCGGCGGCGCGGCGGGGA 349
consensus_2642#1      TCGTCCGTCTGCTCCGGCAACGGCG-ACCGGAGACAGCTCAATTGGAGGGACAGCCACAA 329
                        *  ** * **  ****  ***** **** * *  *    ** ** **  * **    *

consensus_2642#0      ACATCGGGCAAGGGAACTGCGCGGCGG--AGGACATGCCCAACCCGGACAAC---CCCAT 404
consensus_2642#1      CAACCAGTCCGCCGAGTGGTCGGCCAGTCAAGACGAGCTGGACCTCGACGACGAGCTCGC 389
                        * * * *    **   *   * * *  * ***  **   ***  *** **   * *  

consensus_2642#0      GGGGGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCA 464
consensus_2642#1      AGGCGTCCACCGGAGGTCGGCGGCGAGGAGCTCCAAGCGCAGCCGCACCGCCGAAGTCCA 449
                       ** ********************************************************

consensus_2642#0      CAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGT 524
consensus_2642#1      CAACCTGTCAGAGCGGGTAAGCACACACACCATGCACCATCCACAACACCCGCGTCGTGT 509
                      ************************************************************

consensus_2642#0      CATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCG 584
consensus_2642#1      CATGACGTCATCTCATCTCGCCATTGAATTGCTTTCGAGCTCGCAGAGGAGAAGAGACCG 569
                      ************************************************************

consensus_2642#0      GATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAA 644
consensus_2642#1      GATCAACGAGAAGATGCGGGCGCTGCAAGAGCTCATCCCAAACTGCAACAAGATTGACAA 629
                      ************************************************************

consensus_2642#0      GGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGAT 704
consensus_2642#1      GGCGTCGATGCTGGAGGAAGCCATCGAGTACCTCAAGACGCTGCAGCTGCAGGTGCAGAT 689
                      ************************************************************

consensus_2642#0      GATGTCGATGGGGACGGGGATGTT 728
consensus_2642#1      GATGTCGATGGGGACGGGGATGTT 713
                      ************************