These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1481 fasta sequence [CCCAAACAAGGCCCAAAAGGTTTCTGCTTTCAGCCTTCTTCATGCCAAAACCCCAATCCGGCCGGCGACTCTCCGACATCCCGGCCGGCGACCATGGCGGCGGCGGCGGCGGAGGTAGCAGCAGCGGGAGGAGGAGGAGAGATGGTGGTCGTCCGCCTGCCTCCCCTTTCCCAGGACGACCCCCTCTTCCAAGACAAGAAGAGGATATTGGACAGTAGAAACTTATCCTGTCTATTTCAAGTTCCAAACTCATGTTCTGCTGCTGATGCCTTCAAAGTACTGGATAGGATAATCCAAGCTGCTAGGATAGCTCATATGGATGAGCTTGAGCTTTATTTTACTGGAGACGATGATTTCGGGCCATTATCTACAAGGAATGAACTTGAATCTCTAAATTTGTTGCTCAAAATTTTGAACACGTTGCTTCTGACTGCCAATGTTGGTGCCATGGGAGTTTTGCAAGTCCTACGTGATGAAATACTTATTAGGCTCAGATCTCTTGAGTTGGAAGACAATGACCAAATGGTAGTTCAAATACGAAACCAGAACATGGAAGATTCTCTTCTGAAATGGGGGGAGCAACATGGTGTTAAAACTAAATTGCAAATAGCATTTTTTGAAGGAGCTGGGAGAGGAATGGTAGCTTCTGAAAACATAGATGTGGGGGATATTGCACTTGAAATTCCAGAGTCTTCTATCATATCTGAGGAACTTCTCTGCCAGTCTGGCATGTTTCTTGCATTAAAAGATTTAGATAGCATCACCACTGAGACTATGCTATTGTTGTGGAGCATCAGAGAGCGGTACAATCCATCTTCAAAGTTTAAGATATACTTCGAGGCACTCCCAGCAAATTTCAATACAGGGCTGAGTTTTGGAATTGATGCACTTGCTGCATTGGAAGGAACCCTTCTTTTTGATGAGTTAATGCAAGCTAGGCAGCATTTGCGCCAGCAGTATGATGAGTTATTTCCAATGCTGTGCATAAAGTTTCCTGATATATTCAAACAAGACGTGTATACCTGGGACAATTTTCTATGGGCATGTGAATTATGGTATTCTAACAGTATGATGGTTGTATTAAGTAGTGGGAAATTAACAACTTGCTTGATTCCTATTGCCGGACTTCTGAACCACTCGGTTTCTCCTCACATTCTTAACTATGGTCGGGTAGATAAAGTTACGAAATCTTTGAAATTTCCTCTGTCTAGACCATGCAAAGCAGGGGAGCAATGTTTTCTCAGTTATGGGAAGCATCCAGGATCTCATCTTATCACTTTCTATGGTTTTCTACCAAGAGACAACCCTTATGATGTTATACCTTTAGATCTTGATACATCTGTGGATGAAGAAGACAGTTCATCTCCGTCCGTAACTACAAGCCAAACCAGTCATATGGTACGTGGGACATGGCTGTCCAGATTAAGAGGACCTCCGACGTATGGGCTGCCTCATCGCTTGGTATCCCATCTCCATGCCAT] [+] EMBL AK103017 [CCCAAACAAGGCCCAAAAGGTTTCTGCTTTCAGCCTTCTTCATGCCAAAACCCCAATCCGGCCGGCGACTCTCCGACATCCCGGCCGGCGACCATGGCGGCGGCGGCGGCGGAGGTAGCAGCAGCGGGAGGAGGAGGAGAGATGGTGGTCGTCCGCCTGCCTCCCCTTTCCCAGGACGACCCCCTCTTCCAAGACAAGAAGAGGATATTGGACAGTAGAAACTTATCCTGTCTATTTCAAGTTCCAAACTCATGTTCTGCTGCTGATGCCTTCAAAGTACTGGATAGGATAATCCAAGCTGCTAGGATAGCTCATATGGATGAGCTTGAGCTTTATTTTACTGGAGACGATGATTTCGGGCCATTATCTACAAGGAATGAACTTGAATCTCTAAATTTGTTGCTCAAAATTTTGAACACGTTGCTTCTGACTGCCAATGTTGGTGCCATGGGAGTTTTGCAAGTCCTACGTGATGAAATACTTATTAGGCTCAGATCTCTTGAGTTGGAAGACAATGACCAAATGGTAGTTCAAATACGAAACCAGAACATGGAAGATTCTCTTCTGAAATGGGGGGAGCAACATGGTGTTAAAACTAAATTGCAAATAGCATTTTTTGAAGGAGCTGGGAGAGGAATGGTAGCTTCTGAAAACATAGATGTGGGGGATATTGCACTTGAAATTCCAGAGTCTTCTATCATATCTGAGGAACTTCTCTGCCAGTCTGGCATGTTTCTTGCATTAAAAGATTTAGATAGCATCACCACTGAGACTATGCTATTGTTGTGGAGCATCAGAGAGCGGTACAATCCATCTTCAAAGTTTAAGATATACTTCGAGGCACTCCCAGCAAATTTCAATACAGGGCTGAGTTTTGGAATTGATGCACTTGCTGCATTGGAAGGAACCCTTCTTTTTGATGAGTTAATGCAAGCTAGGCAGCATTTGCGCCAGCAGTATGATGAGTTATTTCCAATGCTGTGCATAAAGTTTCCTGATATATTCAAACAAGACGTGTATACCTGGGACAATTTTCTATGGGCATGTGAATTATGGTATTCTAACAGTATGATGGTTGTATTAAGTAGTGGGAAATTAACAACTTGCTTGATTCCTATTGCCGGACTTCTGAACCACTCGGTTTCTCCTCACATTCTTAACTATGGTCGGGTAGATAAAGTTACGAAATCTTTGAAATTTCCTCTGTCTAGACCATGCAAAGCAGGGGAGCAATGTTTTCTCAGTTATGGGAAGCATCCAGGATCTCATCTTATCACTTTCTATGGTTTTCTACCAAGAGACAACCCTTATGATGTTATACCTTTAGATCTTGATACATCTGTGGATGAAGAAGACAGTTCATCTCCGTCCGTAACTACAAGCCAAACCAGTCATATGGTACGTGGGACATGGCTGTCCAGATTAAGAGGACCTCCGACGTATGGGCTGCCTCATCGCTTGGTATCCCATCTCCATGCCAT] consensusID : consensus_2646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1270 fasta sequence [TACTTTTTTTTCTGTAGGTTTCTCCTCACATTCTTAACTATGGTCGGGTAGATAAAGTTACGAAATCTTTGAAATTTCCTCTGTCTAGACCATGCAAAGCAGGGGAGCAATGTTTTCTCAGTTATGGGAAGCATCCAGGATCTCATCTTATCACTTTCTATGGTTTTCTACCAAGAGACAACCCTTATGATGTTATACCTTTAGATCTTGATACATCTGTGGATGAAGAAGACAGTTCATCTCCGTCCGTAACTACAAGCCAAACCAGTCATATGGTACGTGGGACATGGCTGTCCAGATTAAGAGGACCTCCGACGTATGGGCTGCCTCATCGCTTGGTATCCCATCTCCATGCCATTCTAGGTTGTAATCAGAACGAATCCGCTCCAGAGGCTGATAACAAGGAAAATGACAGGATGGTGCTCGAAACACTCCTCTCCATATTTACTCCCATGCTTGAAGGATTAGGCGAACCAGATGACTTCGACCGGGAGAACGCATGTTGGGACGTCAATCTCGCACTGGACTACAAAGATCTACAAAGAAGGATAGTTTTGTCCATTGTTACTTCGTGTACCTCAGGCTTGGCCATGCTTGATTCCTAGTCCGAACTCTTTAGTGCTTCATCATTGGATGTGCAAGACCACAATTGGAGTTTGTTGGGAGTGACTCAAGCTGACATGTGGATGGTGGAGCTGTTGCACATGGGTTACCTGCAACTGACTGCAAATCTGTTCTTTCCTGGATAGGGATCCAAGGACCAGTATGGCATTTGACCACCAGTCCCAAGTGAAGATGCTCAGCTCACAGCATCAGGTGTCTGATCCGATGATTACGCGAAATCCAGTCATCGATCTGTGCCCTCTGTGGCTTGAGATTTAAGTAAGTTGCCCCTGGTTGTTACTGCAAACCTGCTGCTTTTGGTGGAAGAAAGCTACTTCTGAACTAATTTATTGGGGATGGAGTAATGTCTCTTCGACCCATAACGCCGACATTTCAGCTTATTATTTATAAGATCATATTGCTGATCATGGAACTGCACATGGAATTTCTGCTAAATTAGTTTTCTCCCATGTGGTCCATATGCTAGAATAACTGAACACTGCATAAAAGGATGCTCCTTGAGTTGTGTGCTGAACCTGCTAGTTTTTTTCCCTTTTCTTTTCCTTGAGTTGTGTACTGAACCTGCTAGTTTTTTATTTTTCTTTTTTTTCCTTGAGTTATGAACTGTGCCTGTTACTTCCTCTATTTCATATTATAAGTCACTTTG] [+] EMBL AK072666 [TACTTTTTTTTCTGTAGGTTTCTCCTCACATTCTTAACTATGGTCGGGTAGATAAAGTTACGAAATCTTTGAAATTTCCTCTGTCTAGACCATGCAAAGCAGGGGAGCAATGTTTTCTCAGTTATGGGAAGCATCCAGGATCTCATCTTATCACTTTCTATGGTTTTCTACCAAGAGACAACCCTTATGATGTTATACCTTTAGATCTTGATACATCTGTGGATGAAGAAGACAGTTCATCTCCGTCCGTAACTACAAGCCAAACCAGTCATATGGTACGTGGGACATGGCTGTCCAGATTAAGAGGACCTCCGACGTATGGGCTGCCTCATCGCTTGGTATCCCATCTCCATGCCATTCTAGGTTGTAATCAGAACGAATCCGCTCCAGAGGCTGATAACAAGGAAAATGACAGGATGGTGCTCGAAACACTCCTCTCCATATTTACTCCCATGCTTGAAGGATTAGGCGAACCAGATGACTTCGACCGGGAGAACGCATGTTGGGACGTCAATCTCGCACTGGACTACAAAGATCTACAAAGAAGGATAGTTTTGTCCATTGTTACTTCGTGTACCTCAGGCTTGGCCATGCTTGATTCCTAGTCCGAACTCTTTAGTGCTTCATCATTGGATGTGCAAGACCACAATTGGAGTTTGTTGGGAGTGACTCAAGCTGACATGTGGATGGTGGAGCTGTTGCACATGGGTTACCTGCAACTGACTGCAAATCTGTTCTTTCCTGGATAGGGATCCAAGGACCAGTATGGCATTTGACCACCAGTCCCAAGTGAAGATGCTCAGCTCACAGCATCAGGTGTCTGATCCGATGATTACGCGAAATCCAGTCATCGATCTGTGCCCTCTGTGGCTTGAGATTTAAGTAAGTTGCCCCTGGTTGTTACTGCAAACCTGCTGCTTTTGGTGGAAGAAAGCTACTTCTGAACTAATTTATTGGGGATGGAGTAATGTCTCTTCGACCCATAACGCCGACATTTCAGCTTATTATTTATAAGATCATATTGCTGATCATGGAACTGCACATGGAATTTCTGCTAAATTAGTTTTCTCCCATGTGGTCCATATGCTAGAATAACTGAACACTGCATAAAAGGATGCTCCTTGAGTTGTGTGCTGAACCTGCTAGTTTTTTTCCCTTTTCTTTTCCTTGAGTTGTGTACTGAACCTGCTAGTTTTTTATTTTTCTTTTTTTTCCTTGAGTTATGAACTGTGCCTGTTACTTCCTCTATTTCATATTATAAGTCACTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2646#0 CCCAAACAAGGCCCAAAAGGTTTCTGCTTTCAGCCTTCTTCATGCCAAAACCCCAATCCG 60 consensus_2646#1 ------------------------------------------------------------ consensus_2646#0 GCCGGCGACTCTCCGACATCCCGGCCGGCGACCATGGCGGCGGCGGCGGCGGAGGTAGCA 120 consensus_2646#1 ------TACTTTTTTTTCTGTAGGTTTCTCCTCACATTCTTAACTATGGTCG-GGTAGAT 53 *** * * ** ** * ** * ***** consensus_2646#0 GCAGCGGGAGGAGGAGGAGAGATGGTGGTCGTCCGCCTGCCTCCCCTTTCCCAGGACGAC 180 consensus_2646#1 AAAGTTACGAAATCTTTGAAATT-----TCCTCTGTCTAGACCATGCAAAGCAGGGGAGC 108 ** * * * ** ** * ** * **** * consensus_2646#0 CCCCTCTTCCAAGACAAGAAGAGGATATTGGACAGTAGAAACTTATCCTGTCTATTTCAA 240 consensus_2646#1 AATGTTTTCTCAGTTATGGGAAGCATCC--------AGGATCTCATCTTATCACTTTC-- 158 * *** ** * * ** ** ** * ** *** * ** **** consensus_2646#0 GTTCCAAACTCATGTTCTGCTGCTGATGCCTTCAAAGTACTGGATAGGATAATCCAAGCT 300 consensus_2646#1 ----------TATGGTTTTCTACCAAGAG--ACAACCCTTATGATGTTATACCTTTAGAT 206 *** * * ** * * *** *** *** ** * consensus_2646#0 GCTAGGATAGCT-CATATGGATGAGCTTGAGCTTTATTTTACTGGAGACGATGATTTCGG 359 consensus_2646#1 CTTGATACATCTGTGGATGAAGAAGAC--AGTTCATCTCCGTCCGTAACTACAAGCCAAA 264 * * * ** *** * ** ** * * * ** * * consensus_2646#0 GCCATTATCTACAAGGAATGAACTTGAATCTCTAAATTTGTTGCTCAAAATTTTGAACAC 419 consensus_2646#1 CCAGTCATATGGTACGTG-GGACATGGCTGTCCAGATTAAGAGGACCTC-CGACGTATGG 322 * * ** * * * * ** ** * ** * *** * * * * consensus_2646#0 GTTGCTTC-TGACTGCCAATGTTGGTGCCATGGGAGTTTTGCAAGTCCTACGTGATGAAA 478 consensus_2646#1 GCTGCCTCATCGCTTGGTATCCCATCTCCATGCCA---TTCTAGGTT----GTAATCAGA 375 * *** ** * ** ** ***** * ** * ** ** ** * * consensus_2646#0 TACTTATTAGGCTCAGATCTCTTGAGTTGGAAGACAATGACCAAATGGTAGTTCAAATAC 538 consensus_2646#1 -ACGAATCCGCTCCAGAGG--CTGATAACAAGGAAAATGACAGGATGGTGCTCGAAACAC 432 ** ** * **** *** * ** ****** ***** * *** ** consensus_2646#0 GAAACCAGAACATGGAAGATTCTCTTCTGAAATGGGGGGAGCAACATGGTGTTAAAACTA 598 consensus_2646#1 T---CCTCTCCATATTTACTCCCATGCTTGAAGGATTAGGCGAACCAGATG---ACTTCG 486 ** *** * * * ** ** * * *** * ** * consensus_2646#0 AATTGCAAATAGCATTTTTTGAAG--GAGCTGGGAGAGGAATGGTAGCTTCTGAAAACAT 656 consensus_2646#1 ACCGGGAGAACGCATGTTGGGACGTCAATCTCGCACTGGACTACAAAGATCTACAAAGAA 546 * * * * **** ** ** * * ** * * *** * * *** *** * consensus_2646#0 AGATGTGGGGGATATTGCACTTGAAATTCCAGAGTCTTCTATCATATCTGAGGAACTTCT 716 consensus_2646#1 GGATA-----GTTTTGTCCATTGTTACTTCGTGTACCTCAGGCTTGGCCATG---CTTGA 598 *** * * * * *** * * * * ** * * * * *** consensus_2646#0 CTGCCAGTCTGGCATGTTTCTTGCATTAAAAGATTTAGATA-GCATCACCACTGAGACTA 775 consensus_2646#1 TTCCTAGTCCGAACTCTTTAGTGCTTCATCA---TTGGATGTGCAAGACCAC---AATTG 652 * * **** * * *** *** * * * ** *** *** ***** * * consensus_2646#0 TGCTATTGTTGTGGAGCATCAGAGAGCGGTACAATCCATCTTCAAA--GTTTAAGATATA 833 consensus_2646#1 GAGT-TTGTTG-GGAGTGACTCAAGCTGACATG-TGGATGGTGGAGCTGTTGCACATGGG 709 * ****** **** * * * * * ** * * *** * ** consensus_2646#0 CTTCGAGGCACTCCCAGCAAATTTCAATACAGGGCTGAGTTTTGGAATTGATGCACT--T 891 consensus_2646#1 TTACCTGCAACTGACTGCAAATCT--GTTCTTTCCTGGAT--AGGGATCCAAGGACCAGT 765 * * * *** * ****** * * * *** * ** ** * * ** * consensus_2646#0 GCTGCATTGGA--AGGAACCCTTCTTTTTGATGAGTTAATGCAAGCTAGGCAGCATTTGC 949 consensus_2646#1 ATGGCATTTGACCACCAGTCCCAAGTGAAGATGC-TCAGCTCACAGCATCAGGTGTCTGA 824 ***** ** * * ** * **** * * ** * * * ** consensus_2646#0 GCCAGCAGTATGATGAGTTATTTCCAATG--CTGTGCATAAAGTTTCCTGATATATTCAA 1007 consensus_2646#1 TCCGATGATTACGCGAAATCCAGTCATCGATCTGTGCCCTCTGTGGCTTGAGA--TTTAA 882 ** * ** * ** * ****** ** * *** * ** ** consensus_2646#0 ACAAGACGTGTATACCTGGGACAATTTTCTATGGGCATGTGAATTATGGTATTCTAACAG 1067 consensus_2646#1 GTAAGTTGCCCCTGGTTG-------TTACTGCAAACCTGCTGCTTTTGGTGGAAGAAAGC 935 *** * * ** ** ** * ** ** **** ** consensus_2646#0 TA-TGATGGTTGTATTAAGTAGTGGGAAATTAACAACTTGCTTGATTCCTATTGCCGGAC 1126 consensus_2646#1 TACTTCTGAACTAATTTATTGGGGATGGAGTAATGTCTC-TTCGACCCATAACGCCGACA 994 ** * ** *** * * * * * *** ** * ** * ** **** consensus_2646#0 TTCTGAACCACTCGGTTTCTCCTCACATTCTTAACTATGGTCGGGTAGATAAAGTTACGA 1186 consensus_2646#1 TTTCAGCTTATTATTTATAAGATCATATTGCTGATCATGGAACTGCACATGGAATTTCTG 1054 ** * * * * *** *** * * **** * * ** * ** * consensus_2646#0 AATCTTTGAAATTTCCTCTGTCTAGACCATGCAAAGCAGGGGAGCAATGTTTTCTCAGTT 1246 consensus_2646#1 C-TAAATTAGTTTTCTCCCATGTGGTCCATATGC--TAGAATAAC--TGAACACTGCATA 1109 * * * **** * * * * **** ** * * ** ** * consensus_2646#0 ATGGGAAGCATCCAGGATCTCATCTTATCACTTTCTATGGTTTTCTACCAAGAGACAACC 1306 consensus_2646#1 AAAGGATGCTCCTTGAGTTGTGTGCTGA-ACCTGCTA--GTTTTTTTCCCTTTTCTTTTC 1166 * *** ** * * * * * ** * *** ***** * ** * consensus_2646#0 CTTATGATGTTATACCTTTAGATCTTGATACATCTGTGGATGAAGAAGACAGTTCATCTC 1366 consensus_2646#1 CTTGAGTTGT-GTACT----GAACCTGCTAGTTTTTTATTT-----------TTCTTTTT 1210 *** * *** *** ** * ** ** * * * * *** * * consensus_2646#0 CGTCCGTAA-CTACAAGCCAAACCAGTCATATGGTACGTGGGACATGGCTGTCCAGATTA 1425 consensus_2646#1 TTTCCTTGAGTTATGAACTGTGCCTGTTACTTCCTCTATTTCATATTATAAGTCACTTTG 1270 *** * * ** * * ** ** * * * * * ** ** ** consensus_2646#0 AGAGGACCTCCGACGTATGGGCTGCCTCATCGCTTGGTATCCCATCTCCATGCCAT 1481 consensus_2646#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||