cluster # 2659

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Oryza sativa
cluster # 2659 cluster # 2659 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2659#0 length = 291 sequences # 1

consensus_2659#1 length = 208 sequences # 1

consensusID : consensus_2659#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGCCCATTTTTCCCACTTTTTTAAAAGGGTTAATACAAAAACTACAATACCCCTTGTTTTTGGGCCCCAAATTTTAATCCTTTAAACCATGTTAAGGGCCCCCGGCCCCAAATTTTACTCCTTTAAACCATGTTAAAGGCCCCGGGCCCCAAATTTTAATCCTTTAAACCATTTTAAGGGCCCCGGGCCCCAAATTTTAATCCTTTAAACCATGTTAAGGGCCCCGGGCCCCAAATTTTA]

[+] EMBL CF315932             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGCCCATTTTTCCCACTTTTTTAAAAGGGTTAATACAAAAACTACAATACCCCTTGTTTTTGGGCCCCAAATTTTAATCCTTTAAACCATGTTAAGGGCCCCCGGCCCCAAATTTTACTCCTTTAAACCATGTTAAAGGCCCCGGGCCCCAAATTTTAATCCTTTAAACCATTTTAAGGGCCCCGGGCCCCAAATTTTAATCCTTTAAACCATGTTAAGGGCCCCGGGCCCCAAATTTTA]




>consensus_2659#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGCCCATTT
TTCCCACTTTTTTAAAAGGGTTAATACAAAAACTACAATACCCCTTGTTTTTGGGCCCCA
AATTTTAATCCTTTAAACCATGTTAAGGGCCCCCGGCCCCAAATTTTACTCCTTTAAACC
ATGTTAAAGGCCCCGGGCCCCAAATTTTAATCCTTTAAACCATTTTAAGGGCCCCGGGCC
CCAAATTTTAATCCTTTAAACCATGTTAAGGGCCCCGGGCCCCAAATTTTA

consensusID : consensus_2659#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 208
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACCCAAAAAAAAGGGCCCCATTTTTACTCCTTTAAACCCAGTTAAGGGCCCCGGGCCCCAAATTTTAATCCTTTAAACCATTTTAAGGGCCCCCGGCCCCAAATTTTAATCCTTTAAACCCTTTTAAGGGCCCCGGGCCCCAAATTTTA]

[+] EMBL CF313268             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACCCAAAAAAAAGGGCCCCATTTTTACTCCTTTAAACCCAGTTAAGGGCCCCGGGCCCCAAATTTTAATCCTTTAAACCATTTTAAGGGCCCCCGGCCCCAAATTTTAATCCTTTAAACCCTTTTAAGGGCCCCGGGCCCCAAATTTTA]




>consensus_2659#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAA
CCCAAAAAAAAGGGCCCCATTTTTACTCCTTTAAACCCAGTTAAGGGCCCCGGGCCCCAA
ATTTTAATCCTTTAAACCATTTTAAGGGCCCCCGGCCCCAAATTTTAATCCTTTAAACCC
TTTTAAGGGCCCCGGGCCCCAAATTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2659#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGCCCATTT 60
consensus_2659#1      --------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------TTT 43
                              ****************************************         ***

consensus_2659#0      TTCCCACTTTTTTAAAAGGGTTAATACAAAAACTACAATACCCCTTGTTTTTGGGCCCCA 120
consensus_2659#1      TTTTTTTTTTTTTGGAA-------CCCAAAAAAAA-----------------GGGCCCCA 79
                      **     ******  **         ******  *                 ********

consensus_2659#0      AATTTTAATCCTTTAAACCATGTTAAGGGCCCCCGGCCCCAAATTTTACTCCTTTAAACC 180
consensus_2659#1      T-TTTTACTCCTTTAAACCCAGTTAAGGGCCCCGGGCCCCAAATTTTAATCCTTTAAACC 138
                        ***** ***********  ************ ************** ***********

consensus_2659#0      ATGTTAAAGGCCCCGGGCCCCAAATTTTAATCCTTTAAACCATTTTAAGGGCCCCGGGCC 240
consensus_2659#1      ATTTTAAGGGCCCCCGGCCCCAAATTTTAATCCTTTAAACCCTTTTAAGGGCCCCGGGCC 198
                      ** **** ****** ************************** ******************

consensus_2659#0      CCAAATTTTAATCCTTTAAACCATGTTAAGGGCCCCGGGCCCCAAATTTTA 291
consensus_2659#1      CCAAATTTTA----------------------------------------- 208
                      **********