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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1613 fasta sequence
[CCGCACCGCACGCCGACATCGCCGGAGAGGGCGCCGCTCGCCGGCATCGTCGTCGCCGGAGACTCGTCCGTCCATCCGCAAGGGAGTCCAGCAATACTCCATCATGCAAAGCCCCAGCAAGGTTTCTGAAGCCTCTGGCTCAGCACCCCCTGCCACGTCTGTGATCGAAGGTTGGGCAGAACTCCCAGAGGGCCTGCTTCACTCCATTGTTGCTCTATTGGGCTCTTTCCTTGACCTCCTTGCCTTCACTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCCTACCCATCAAAATCTAACTTTCGCACCATACTCCCACCCCTCCTCGTCCGACCCAATGTCCGCGTCAAAGCCCCTTATAGCAGCAATGGTCATCGCAAGCTACGCTCGTGTGAGGTCATTGATCTAGCCAACCGAAACACCCCACTCCGCTGCCAGATTCCTCAAGAAACTCTGCAGAGGATGCATTTTGCAGGTTCTTCCCATGGTCAGCTCATCTGCTGCCGCCGTGGTTATTGTCTTGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCTCCACGCCTTCCATTCAGTGAGAACTGTGATGAGTTCTACTACTGTGGCATTCTGACGGCTCCTATCACGTCACCTAACTCACATCTCATTATCAGCACTCAGTCCTCCCTGTTTGATTGGCCAGTTGGAAGTGACTCTTGGTCTGAGCTCAAGCTGCCCGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTCATCGCTGTGATTGAATACAGTCTGTACACTTTGCAGTTGGCCCCCATTCTTCGCTTGGAAAAGATAAAAACTCTCTGGTGGGATAACATGAATGAATGTCCGTATATGAGACCATGGTTTGTGGTTTGTGGTGACATGCTTCTCATTGTTGACCACTACATAAGTTTTTCATTTGGAGCACCGGTCCTCTACAGGCCATACCGTCTGGACATGTCGACCAAGCCTGCAAAATGGGTGGAGGTAAAGAAGCTGGAGAACTGGGCACTCTTCATTGGGGGTGATGCAAGGAGCCCTCCATTTTCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTACTCTCAGCCATTGAGCCTGCATGGGTTAGGTGATGATGCAGATGCTGTGTGGGATCCTAACACTGATGACAACCTCGTGTTCAAAAGAAACTGGTACCGCCAGCTGCAGGCCTTGTGGGTGTACCCAAGCATGTTCTATTCAGCGGGAGACGGCCAGTGATTGCTGCACAAGAGCTCTGCTCTTATCATCTGATTCTGAGACTCTCTTCTGAATTCTGATGTAGGGCAGAGCATCTTAATGCTTAGCTTAATAATACTTGCAGTCGTTTTGTAGCTCAGTTGTTAGCTGCATTCTCTAGTCTAATATTTTCGAGGTGCACTGGATGCTTTTGTACCTAAACTATTAGTAGCTGTTGCTTTTATGCTGGAAGTCTGGATTCTGGAACTCGCTACCGTTGAGGATTTCCACTGGTGATGGAGATAATGTTTCGTTTTACGAGTGTTTGAGCTTAGCTGCTATATTTTGGAACATTAATATATATTCTTGTGTG]
[+] EMBL AK072974 [CCGCACCGCACGCCGACATCGCCGGAGAGGGCGCCGCTCGCCGGCATCGTCGTCGCCGGAGACTCGTCCGTCCATCCGCAAGGGAGTCCAGCAATACTCCATCATGCAAAGCCCCAGCAAGGTTTCTGAAGCCTCTGGCTCAGCACCCCCTGCCACGTCTGTGATCGAAGGTTGGGCAGAACTCCCAGAGGGCCTGCTTCACTCCATTGTTGCTCTATTGGGCTCTTTCCTTGACCTCCTTGCCTTCACTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCCTACCCATCAAAATCTAACTTTCGCACCATACTCCCACCCCTCCTCGTCCGACCCAATGTCCGCGTCAAAGCCCCTTATAGCAGCAATGGTCATCGCAAGCTACGCTCGTGTGAGGTCATTGATCTAGCCAACCGAAACACCCCACTCCGCTGCCAGATTCCTCAAGAAACTCTGCAGAGGATGCATTTTGCAGGTTCTTCCCATGGTCAGCTCATCTGCTGCCGCCGTGGTTATTGTCTTGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCTCCACGCCTTCCATTCAGTGAGAACTGTGATGAGTTCTACTACTGTGGCATTCTGACGGCTCCTATCACGTCACCTAACTCACATCTCATTATCAGCACTCAGTCCTCCCTGTTTGATTGGCCAGTTGGAAGTGACTCTTGGTCTGAGCTCAAGCTGCCCGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTCATCGCTGTGATTGAATACAGTCTGTACACTTTGCAGTTGGCCCCCATTCTTCGCTTGGAAAAGATAAAAACTCTCTGGTGGGATAACATGAATGAATGTCCGTATATGAGACCATGGTTTGTGGTTTGTGGTGACATGCTTCTCATTGTTGACCACTACATAAGTTTTTCATTTGGAGCACCGGTCCTCTACAGGCCATACCGTCTGGACATGTCGACCAAGCCTGCAAAATGGGTGGAGGTAAAGAAGCTGGAGAACTGGGCACTCTTCATTGGGGGTGATGCAAGGAGCCCTCCATTTTCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTACTCTCAGCCATTGAGCCTGCATGGGTTAGGTGATGATGCAGATGCTGTGTGGGATCCTAACACTGATGACAACCTCGTGTTCAAAAGAAACTGGTACCGCCAGCTGCAGGCCTTGTGGGTGTACCCAAGCATGTTCTATTCAGCGGGAGACGGCCAGTGATTGCTGCACAAGAGCTCTGCTCTTATCATCTGATTCTGAGACTCTCTTCTGAATTCTGATGTAGGGCAGAGCATCTTAATGCTTAGCTTAATAATACTTGCAGTCGTTTTGTAGCTCAGTTGTTAGCTGCATTCTCTAGTCTAATATTTTCGAGGTGCACTGGATGCTTTTGTACCTAAACTATTAGTAGCTGTTGCTTTTATGCTGGAAGTCTGGATTCTGGAACTCGCTACCGTTGAGGATTTCCACTGGTGATGGAGATAATGTTTCGTTTTACGAGTGTTTGAGCTTAGCTGCTATATTTTGGAACATTAATATATATTCTTGTGTG]
consensusID : consensus_2662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1604 fasta sequence
[ATCGCCGGAGAGGTCGCCGGCGGCATCGTCGTCCTCCCCGTCGCCGGAGATCGGACCTCCTCCACAAGGGAGTTCGGCAATCTGCCATCATGCAAAGCCCCAGCAAGATCTCTGATGCCTCTGGCTCAATGCCCCCTGCCACGTCTGTGCGCAAAGGTTCCAAGAAGAACTGCTTCACTCCATTGTTCCTCTGTTGGGCTCCTTCGTCGACATTCTCGCCTTTGCTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCATACCCATCAAAATCTGCCTTTCGCACCTTACTCCCACCACTCCTCGTCCGACCCAATGTCCGCGTCAAATCCCCTTGTATCCCTTCTACCAGCAATGGTCCTCACAAGCTACTACGCTCATGTCAGGTCATTGATCTAGCCAACCGAAACACCCCGCTCCGCTGCCAGATTCCTCGAGAAACTCTGCAGAAGATGCTTTTTGCAGGCTCTTCTCATGGTCAACTCATATGCTGCCGCAGTGGTTACTGTCTCGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCACCACGTCTTCCATTCAGCAAGGACCATGAGGAGATCTACTTTTGTGGCACTCTGACGGCTCCTATCACGTCACCCAACTCACATCTCCTTATCAGCAACCGGTCATCTCTGTTCGATTGGCCGGTTGGAAGTGACTCCTGGTCTGAGCTCAAGCTTCCTGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTCATCGCCGTGATTGAATACAAGCTGTACACTTTGCAGTTGGCCCCCAAGCTTCGCCTGAAGAAGATGAAAACCCTGTGGTGGGATGACATGAGTGAATGTCCATATTTGAGACCATGGCTAGTGGTTTGCGATGGCATGCTTCTCATTGTTGACCACTACATAACTTTGTCATTTGGAGCACCAGTCAACTACAGACCGTACCGCCTGGACATGTCAGCCAAGCCTGCAAAATGGGTGGAGGTAAAGAAGCTGGAGAACTGGGCACTCTTTATCGGGGGTGATGCGAGAAGCCCGCCGTTTGCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTACTCCCAGCCATGGAGCCTTCATGGGTTGGGTGATGATGCAGATGCTGTGTGGGATCCTACCACTGATGATAACCTTGTGTTCAAAAGAAACTGGTACAGTCAGCTGCAGGCCTTCTGGGTGTATCCAAGCATGTTCTATTCAGACGGAGACGGCCAGTGATTGGCACACGCACGAGTGCCCTGCTCTTATTAGCTTCTTCTAAAATTGCCCCCTTGTGATGTAGAGCAGAGACTTGTGCAACTTGGCCTAGAAATCTAGGAGATCCTCATGGTGGTCTTTATGTCTAGTTTAACACTTGCAGTCGTTTTGTAGTTCAGTTATTAGCTGCATTACCATCTGATAGTAGGGTGTGACTGCACTGGATGCAAGTGTAGTTAACTAGTTGTTGCTTTTCCACTGGTGATGGTAGGTAATGTTTCGTTCTGTAAGGGTTTGGAACTTTTGTTCTTCTTCACAGCAATGGTTTGGAACACTAATGTAATGCTTGTGCACT]
[+] EMBL AK107286 [ATCGCCGGAGAGGTCGCCGGCGGCATCGTCGTCCTCCCCGTCGCCGGAGATCGGACCTCCTCCACAAGGGAGTTCGGCAATCTGCCATCATGCAAAGCCCCAGCAAGATCTCTGATGCCTCTGGCTCAATGCCCCCTGCCACGTCTGTGCGCAAAGGTTCCAAGAAGAACTGCTTCACTCCATTGTTCCTCTGTTGGGCTCCTTCGTCGACATTCTCGCCTTTGCTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCATACCCATCAAAATCTGCCTTTCGCACCTTACTCCCACCACTCCTCGTCCGACCCAATGTCCGCGTCAAATCCCCTTGTATCCCTTCTACCAGCAATGGTCCTCACAAGCTACTACGCTCATGTCAGGTCATTGATCTAGCCAACCGAAACACCCCGCTCCGCTGCCAGATTCCTCGAGAAACTCTGCAGAAGATGCTTTTTGCAGGCTCTTCTCATGGTCAACTCATATGCTGCCGCAGTGGTTACTGTCTCGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCACCACGTCTTCCATTCAGCAAGGACCATGAGGAGATCTACTTTTGTGGCACTCTGACGGCTCCTATCACGTCACCCAACTCACATCTCCTTATCAGCAACCGGTCATCTCTGTTCGATTGGCCGGTTGGAAGTGACTCCTGGTCTGAGCTCAAGCTTCCTGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTCATCGCCGTGATTGAATACAAGCTGTACACTTTGCAGTTGGCCCCCAAGCTTCGCCTGAAGAAGATGAAAACCCTGTGGTGGGATGACATGAGTGAATGTCCATATTTGAGACCATGGCTAGTGGTTTGCGATGGCATGCTTCTCATTGTTGACCACTACATAACTTTGTCATTTGGAGCACCAGTCAACTACAGACCGTACCGCCTGGACATGTCAGCCAAGCCTGCAAAATGGGTGGAGGTAAAGAAGCTGGAGAACTGGGCACTCTTTATCGGGGGTGATGCGAGAAGCCCGCCGTTTGCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTACTCCCAGCCATGGAGCCTTCATGGGTTGGGTGATGATGCAGATGCTGTGTGGGATCCTACCACTGATGATAACCTTGTGTTCAAAAGAAACTGGTACAGTCAGCTGCAGGCCTTCTGGGTGTATCCAAGCATGTTCTATTCAGACGGAGACGGCCAGTGATTGGCACACGCACGAGTGCCCTGCTCTTATTAGCTTCTTCTAAAATTGCCCCCTTGTGATGTAGAGCAGAGACTTGTGCAACTTGGCCTAGAAATCTAGGAGATCCTCATGGTGGTCTTTATGTCTAGTTTAACACTTGCAGTCGTTTTGTAGTTCAGTTATTAGCTGCATTACCATCTGATAGTAGGGTGTGACTGCACTGGATGCAAGTGTAGTTAACTAGTTGTTGCTTTTCCACTGGTGATGGTAGGTAATGTTTCGTTCTGTAAGGGTTTGGAACTTTTGTTCTTCTTCACAGCAATGGTTTGGAACACTAATGTAATGCTTGTGCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2662#0 CCGCACCGCACGCCGACATCGCCGGAGAGGGCGCCGC-----TCGCCGGCATCGTCGTCG 55
consensus_2662#1 -----------------ATCGCCGGAGAGGTCGCCGGCGGCATCGTCGTCCTCCCCGTCG 43
************* ***** *** ** * ** *****
consensus_2662#0 CCGGAGACTCGTCCGTCCATCCGCAAGGGAGTCCAGCAATACTCCATCATGCAAAGCCCC 115
consensus_2662#1 CCGGAGATCGGACC--TCCTCCACAAGGGAGTTCGGCAATCTGCCATCATGCAAAGCCCC 101
******* * ** * *** ********* * ***** *****************
consensus_2662#0 AGCAAGGTTTCTGAAGCCTCTGGCTCAGCACCCCCTGCCACGTCTGTGATCGAAGGTTGG 175
consensus_2662#1 AGCAAGATCTCTGATGCCTCTGGCTCAATGCCCCCTGCCACGTCTGTGCGCAAAGGTT-- 159
****** * ***** ************ ****************** * ******
consensus_2662#0 GCAGAACTCCCAGAGGGCCTGCTTCACTCCATTGTTGCTCTATTGGGCTCTTTCCTTGAC 235
consensus_2662#1 --------CCAAGAAGAACTGCTTCACTCCATTGTTCCTCTGTTGGGCTCCTTCGTCGAC 211
** *** * ****************** **** ******** *** * ***
consensus_2662#0 CTCCTTGCCTTCACTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCCTACCCATCA 295
consensus_2662#1 ATTCTCGCCTTTGCTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCATACCCATCA 271
* ** ***** ************************************* *********
consensus_2662#0 AAATCTAACTTTCGCACCATACTCCCACCCCTCCTCGTCCGACCCAATGTCCGCGTCAAA 355
consensus_2662#1 AAATCTGCCTTTCGCACCTTACTCCCACCACTCCTCGTCCGACCCAATGTCCGCGTCAAA 331
****** ********** ********** ******************************
consensus_2662#0 GCCCCTTATAGC---------AGCAATGGTCATCGCAAGCTAC---GCTCGTGTGAGGTC 403
consensus_2662#1 TCCCCTTGTATCCCTTCTACCAGCAATGGTCCTCACAAGCTACTACGCTCATGTCAGGTC 391
****** ** * ********** ** ******** **** *** *****
consensus_2662#0 ATTGATCTAGCCAACCGAAACACCCCACTCCGCTGCCAGATTCCTCAAGAAACTCTGCAG 463
consensus_2662#1 ATTGATCTAGCCAACCGAAACACCCCGCTCCGCTGCCAGATTCCTCGAGAAACTCTGCAG 451
************************** ******************* *************
consensus_2662#0 AGGATGCATTTTGCAGGTTCTTCCCATGGTCAGCTCATCTGCTGCCGCCGTGGTTATTGT 523
consensus_2662#1 AAGATGCTTTTTGCAGGCTCTTCTCATGGTCAACTCATATGCTGCCGCAGTGGTTACTGT 511
* ***** ********* ***** ******** ***** ********* ******* ***
consensus_2662#0 CTTGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCTCCACGCCTTCCATTCAGTGAG 583
consensus_2662#1 CTCGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCACCACGTCTTCCATTCAGCAAG 571
** *********************************** ***** *********** **
consensus_2662#0 AACTGTGATGAGTTCTACTACTGTGGCATTCTGACGGCTCCTATCACGTCACCTAACTCA 643
consensus_2662#1 GACCATGAGGAGATCTACTTTTGTGGCACTCTGACGGCTCCTATCACGTCACCCAACTCA 631
** *** *** ****** ******* ************************ ******
consensus_2662#0 CATCTCATTATCAGCACTCAGTCCTCCCTGTTTGATTGGCCAGTTGGAAGTGACTCTTGG 703
consensus_2662#1 CATCTCCTTATCAGCAACCGGTCATCTCTGTTCGATTGGCCGGTTGGAAGTGACTCCTGG 691
****** ********* * *** ** ***** ******** ************** ***
consensus_2662#0 TCTGAGCTCAAGCTGCCCGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTC 763
consensus_2662#1 TCTGAGCTCAAGCTTCCTGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTC 751
************** ** ******************************************
consensus_2662#0 ATCGCTGTGATTGAATACAGTCTGTACACTTTGCAGTTGGCCCCCATTCTTCGCTTGGAA 823
consensus_2662#1 ATCGCCGTGATTGAATACAAGCTGTACACTTTGCAGTTGGCCCCCAAGCTTCGCCTGAAG 811
***** ************* ************************* ****** ** *
consensus_2662#0 AAGATAAAAACTCTCTGGTGGGATAACATGAATGAATGTCCGTATATGAGACCATGGTTT 883
consensus_2662#1 AAGATGAAAACCCTGTGGTGGGATGACATGAGTGAATGTCCATATTTGAGACCATGGCTA 871
***** ***** ** ********* ****** ********* *** *********** *
consensus_2662#0 GTGGTTTGTGGTGACATGCTTCTCATTGTTGACCACTACATAAGTTTTTCATTTGGAGCA 943
consensus_2662#1 GTGGTTTGCGATGGCATGCTTCTCATTGTTGACCACTACATAACTTTGTCATTTGGAGCA 931
******** * ** ***************************** *** ************
consensus_2662#0 CCGGTCCTCTACAGGCCATACCGTCTGGACATGTCGACCAAGCCTGCAAAATGGGTGGAG 1003
consensus_2662#1 CCAGTCAACTACAGACCGTACCGCCTGGACATGTCAGCCAAGCCTGCAAAATGGGTGGAG 991
** *** ****** ** ***** *********** ***********************
consensus_2662#0 GTAAAGAAGCTGGAGAACTGGGCACTCTTCATTGGGGGTGATGCAAGGAGCCCTCCATTT 1063
consensus_2662#1 GTAAAGAAGCTGGAGAACTGGGCACTCTTTATCGGGGGTGATGCGAGAAGCCCGCCGTTT 1051
***************************** ** *********** ** ***** ** ***
consensus_2662#0 TCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTAC 1123
consensus_2662#1 GCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTAC 1111
***********************************************************
consensus_2662#0 TCTCAGCCATTGAGCCTGCATGGGTTAGGTGATGATGCAGATGCTGTGTGGGATCCTAAC 1183
consensus_2662#1 TCCCAGCCATGGAGCCTTCATGGGTTGGGTGATGATGCAGATGCTGTGTGGGATCCTACC 1171
** ******* ****** ******** ******************************* *
consensus_2662#0 ACTGATGACAACCTCGTGTTCAAAAGAAACTGGTACCGCCAGCTGCAGGCCTTGTGGGTG 1243
consensus_2662#1 ACTGATGATAACCTTGTGTTCAAAAGAAACTGGTACAGTCAGCTGCAGGCCTTCTGGGTG 1231
******** ***** ********************* * ************** ******
consensus_2662#0 TACCCAAGCATGTTCTATTCAGCGGGAGACGGCCAGTGATTGCT----GCACAAGAGCTC 1299
consensus_2662#1 TATCCAAGCATGTTCTATTCAGACGGAGACGGCCAGTGATTGGCACACGCACGAGTGCCC 1291
** ******************* ****************** **** ** ** *
consensus_2662#0 TGCTCTTATCATCTGATTCTGAGACTCTCTTCTGAATTCTGATGTAGGGCAGAGCATCTT 1359
consensus_2662#1 TGCTCTTATTAGCTTCTTCTAAAATTGCCCCC----TTGTGATGTAGAGCAGAGACTTGT 1347
********* * ** **** * * * * * ** ******** ****** * *
consensus_2662#0 AATGCTTAGCTTAATAATACTTGCAGTCGTTTTGTAGCTCAGTTGTTAGCTGCATTCTCT 1419
consensus_2662#1 GCAACTTGGCCTAGAAATCTAGGAGATCCTCATGGTGGTC--TTTATGTCTAGTTTAACA 1405
*** ** ** *** * ** * ** * ** ** * ** ** *
consensus_2662#0 AGTCTAATATTTTCGAGGTGCACTGGATGCTTTTGTACCTAAACTATTAGTAGCTGTTGC 1479
consensus_2662#1 CTTGCAGTCGTTTTGTAGTTCAGTTATTAGCTGCATTACCAT-CTGATAGTAG--GGTGT 1462
* * * *** * ** ** * * * * * * ** ****** * **
consensus_2662#0 TTTTATGCTGGAAGTCTGGATTCTGGAACTCGCTACCGTTGAGGATTTCCACTGGTGATG 1539
consensus_2662#1 GACTGCACTGGATGCAAGTGTAGTT-AACTAGTTGTTGCT-----TTTCCACTGGTGATG 1516
* ***** * * * * **** * * * * ***************
consensus_2662#0 G-AGATAATGTTTCGTTTTACGAGTGTTTGAG------------CTTAGCTGCTATATTT 1586
consensus_2662#1 GTAGGTAATGTTTCGTTCTGTAAGGGTTTGGAACTTTTGTTCTTCTTCACAGCAATGGTT 1576
* ** ************ * ** ***** *** * ** ** **
consensus_2662#0 TGGAACATTAATATATATTCTTGTGTG-- 1613
consensus_2662#1 TGGAACACTAATGTA-ATGCTTGTGCACT 1604
******* **** ** ** ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||