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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1568 fasta sequence
[CATGTGTGATTACTTCTTGCAACGGATAGAGGGGGAGCAGGCCGCCGGAGACCTCGCCGACATCGTCCTCCGCGCCGGCGGGGCTGCTGCTGCTGCTGTTGCGGGCGGCGGCATCCCGTCGACGGAGTGGCAGCTACCACCGGCGGAGGAGGAGGAGGAAGAGCCGGGTCTCTTCCCGCTGCCGCCGTCGTCGTCGGATGGCTCCGGCATGAGCGGCGCGGATGCGTTCGGCGACCCGTTCGCTGGCCTCCCCGACCCCTTCGGTGGCGACTACCCCTCCTCTGGCGGAGCGGCGGCGGCCGCCGACTTCTTTGACGCCGTCGTGGCCAAGGCCGGGTTCGTCGACGTCGGTGTCCTCGGTGGCGGCGGCGGCGGTGGCTGCGATGGAGGTGGCGTTGATGGTGGTGGAGGAGGGTCGTCGCTGCTGGGCATGAGCAAGCCTATCTTGCCTAGGGCCGCCATGCAGTTGCCGTCGGTGTCGCCGAGGGCGATACGGCCGTACCCCGTGATGGCCTGTGACACGGTGAAGCTCGGCGCGCCGATGGCCGGCGGGCCGTGCGCGTTCGACGGCGCCGCCGCGGCAGGGCTGCACATGTCGTCGTCGCCGCGTGGCGCCGTCGGCGGGATCAAGCGCAGGAAGAACCAGGCTAGGAAGGTGGTGTGCATCCCAGCGCCTGCAGCAGCAGGAGGGAGGACCAGTGGGGAGGTTGTTCCTTCCGATCTCTGGGCTTGGAGGAAGTATGGCCAGAAGCCTATCAAAGGCTCTCCTTACCCAAGAGGGTACTACAGATGCAGCAGCTCGAAAGGATGCTCGGCGCGCAAGCAGGTGGAGCGCAGCCGGACCGACCCCAACATGCTCGTCATCACCTACACGTCGGAGCACAACCACCCGTGGCCGACGCAGCGCAACGCGCTCGCCGGCTCCACGCGGTCTCATCACGCCAAGAACAGCAGCAGCAACAGCAGCAGCAGCGGCGCCTCCTCAGCCTCCAAGAACAACTCCTCCCACAGCGGTTACCACCACCACCACCACCAGAAGCCACTCGTCAAGGCGGAACCCAACGATCAATCCGCCGCCGCCACGACCGCCGCCACGGTGCCGGTGAAAGAGGAGGCCGCCATGGTAGGGACGTCGTCGGAAGCATTGGCGAAGACGACGCAGAAATCCATGGAGGATGCTGCTGCTGCTGCTTCAGCCACGGCGGCGGCGGTGGAGCACAGTGATCTCATGCAGCAGATGTTCAGCCAGAGCTACCGGCCGATGATACCGGAGGCAGCGGCCGGCGGCCACCACGACGACTTCTTCGCCGACCTCGCCGAGTTGGAGTCAGATCCCATGAGCCTGATCTTCTCCAAGGAGTACATGGCGACCAATTACAAGCCAGCAGGTGACCCAGCAGGCAAGGAGATGAATGCAGTAGACAAGGGCTTGGATCCAGCGTACATGCTGGATTGGTCTTCTACCACTGTTGTTACTAGAGCTGGTGGGAGCTCATTTATGCAAGGGGAGGGAGGTTTATGACATTTTAATCACTTTGAAACAAAAGGCAAAAGCTAGTATATGCGAA]
[+] EMBL AK073100 [CATGTGTGATTACTTCTTGCAACGGATAGAGGGGGAGCAGGCCGCCGGAGACCTCGCCGACATCGTCCTCCGCGCCGGCGGGGCTGCTGCTGCTGCTGTTGCGGGCGGCGGCATCCCGTCGACGGAGTGGCAGCTACCACCGGCGGAGGAGGAGGAGGAAGAGCCGGGTCTCTTCCCGCTGCCGCCGTCGTCGTCGGATGGCTCCGGCATGAGCGGCGCGGATGCGTTCGGCGACCCGTTCGCTGGCCTCCCCGACCCCTTCGGTGGCGACTACCCCTCCTCTGGCGGAGCGGCGGCGGCCGCCGACTTCTTTGACGCCGTCGTGGCCAAGGCCGGGTTCGTCGACGTCGGTGTCCTCGGTGGCGGCGGCGGCGGTGGCTGCGATGGAGGTGGCGTTGATGGTGGTGGAGGAGGGTCGTCGCTGCTGGGCATGAGCAAGCCTATCTTGCCTAGGGCCGCCATGCAGTTGCCGTCGGTGTCGCCGAGGGCGATACGGCCGTACCCCGTGATGGCCTGTGACACGGTGAAGCTCGGCGCGCCGATGGCCGGCGGGCCGTGCGCGTTCGACGGCGCCGCCGCGGCAGGGCTGCACATGTCGTCGTCGCCGCGTGGCGCCGTCGGCGGGATCAAGCGCAGGAAGAACCAGGCTAGGAAGGTGGTGTGCATCCCAGCGCCTGCAGCAGCAGGAGGGAGGACCAGTGGGGAGGTTGTTCCTTCCGATCTCTGGGCTTGGAGGAAGTATGGCCAGAAGCCTATCAAAGGCTCTCCTTACCCAAGAGGGTACTACAGATGCAGCAGCTCGAAAGGATGCTCGGCGCGCAAGCAGGTGGAGCGCAGCCGGACCGACCCCAACATGCTCGTCATCACCTACACGTCGGAGCACAACCACCCGTGGCCGACGCAGCGCAACGCGCTCGCCGGCTCCACGCGGTCTCATCACGCCAAGAACAGCAGCAGCAACAGCAGCAGCAGCGGCGCCTCCTCAGCCTCCAAGAACAACTCCTCCCACAGCGGTTACCACCACCACCACCACCAGAAGCCACTCGTCAAGGCGGAACCCAACGATCAATCCGCCGCCGCCACGACCGCCGCCACGGTGCCGGTGAAAGAGGAGGCCGCCATGGTAGGGACGTCGTCGGAAGCATTGGCGAAGACGACGCAGAAATCCATGGAGGATGCTGCTGCTGCTGCTTCAGCCACGGCGGCGGCGGTGGAGCACAGTGATCTCATGCAGCAGATGTTCAGCCAGAGCTACCGGCCGATGATACCGGAGGCAGCGGCCGGCGGCCACCACGACGACTTCTTCGCCGACCTCGCCGAGTTGGAGTCAGATCCCATGAGCCTGATCTTCTCCAAGGAGTACATGGCGACCAATTACAAGCCAGCAGGTGACCCAGCAGGCAAGGAGATGAATGCAGTAGACAAGGGCTTGGATCCAGCGTACATGCTGGATTGGTCTTCTACCACTGTTGTTACTAGAGCTGGTGGGAGCTCATTTATGCAAGGGGAGGGAGGTTTATGACATTTTAATCACTTTGAAACAAAAGGCAAAAGCTAGTATATGCGAA]
consensusID : consensus_2666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1514 fasta sequence
[TAAGCTAGCCATGTGCGACTACTTCCTGCAGAGGATGGAGGGCGACCAGGCCGGCGGCGACCTCACCGACATCGTCCGCGCCGGGGGAGGGGCCATGCCGGGGAGCGTCGTCGTCGACCTCCCGTCGACGGCCGCCGAGTGGCAGCTCCCGGCTGAGCCGATGCTCTTCCCGCCGCCGCCGTCGTTGTCGTCGACGACGGACGGCTGTGGCGCCGGGGGAGCGGCAGGCGCCGACATCTTCGGCGGTGGCGGCGGCGACCTTTTCTCCGGCCTCGTGGACCCGTTCAGCAGCGACTACTCGTCCGGCGCGGACTTCTTGGACGCCATGCCGGACGCGATGGCGAAGGTCGGCTTCGACACAGCTGTCGTCGCCGGCATGCAGATGTCGTCGCCGCGCTCCGGCGGGATCAAGCGCAGGAAGAACCAGGCGAGGAAGGTGGTGTGCATCCCGGCGCCGACGGCGGCGGGAGGAAGACCCAGTGGTGAGGTGGTGCCTTCTGATCTCTGGGCTTGGAGGAAGTACGGCCAGAAGCCTATCAAGGGCTCACCCTACCCAAGAGGCTATTATAGATGCAGCAGTTCAAAAGGTTGCTCTGCAAGGAAGCAAGTAGAGCGCAGCCGTACTGACCCAAACATGCTCGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCGACCCAGCGCAACGCCCTCGCCGGCTCAACCCGGTCTCACCACAGCAAGAACAGCGGCGGCGGCGGCGGCTCGGGTTCCAAGGGCTCTCAGAACGACAAGTCACAGCAGCAGCCAAGCGTTAAAGAAGAGCAGAAGGATCAGGCGACGACGGCGACGACGACGACCACCAGCACAATCACTACCACGAATAGTGCTTCTCCTGTGGTTGTGAAGGAGGAAGAGGCGGCACTGGCAGGATCGTCGGAAGCATTGGAGTTGGAGAGAGTCATGGACACTACTGCAGCTGGAGTAGTAGACCACAGTGAGCTCATGGATCATGTTTTCAGTGAGAGCTACAAGCCGATGATACCGGAGACTGGCCAGCCGGATGATTTCTTCGCAGACCTCGCCGAGTTGGAGTCAGATCCCATGAGCTTAATCTTCTCGAAGGAGTACATGGAAGCCAAGCCAAGTGGTGGCGATCATGCCCAGGAGAAGGCAATGGCCAAGGAATTGGATCCATTCGACATGCTAGACTGGTCTACTACTACTAACTCTTCGGCAGGGAGCTCATTTGAGCAAGGGAAGAGAGGCTAAACCCATGGGCATAAAGCCATGCATGAGGGTTTATGCATGCATACGGTTACATAAACTTGATCCCAGCTAATAACCATAAAGATTGTGACAATGTCAGCAAAGGAAAGATGAGATTTTTTTTTTTACTTTTCTTTTCTTCATTTGGTCTCTCTGCTTCTTCATATTATTGTGTGTGAGAATTAAATTTTGTTTCAAGGTCTAGGTATATGGACCTCATTTTTTAGGCTGTGTCAACTTGTTGTACTTATGCATGAGATGA]
[+] EMBL AK110912 [TAAGCTAGCCATGTGCGACTACTTCCTGCAGAGGATGGAGGGCGACCAGGCCGGCGGCGACCTCACCGACATCGTCCGCGCCGGGGGAGGGGCCATGCCGGGGAGCGTCGTCGTCGACCTCCCGTCGACGGCCGCCGAGTGGCAGCTCCCGGCTGAGCCGATGCTCTTCCCGCCGCCGCCGTCGTTGTCGTCGACGACGGACGGCTGTGGCGCCGGGGGAGCGGCAGGCGCCGACATCTTCGGCGGTGGCGGCGGCGACCTTTTCTCCGGCCTCGTGGACCCGTTCAGCAGCGACTACTCGTCCGGCGCGGACTTCTTGGACGCCATGCCGGACGCGATGGCGAAGGTCGGCTTCGACACAGCTGTCGTCGCCGGCATGCAGATGTCGTCGCCGCGCTCCGGCGGGATCAAGCGCAGGAAGAACCAGGCGAGGAAGGTGGTGTGCATCCCGGCGCCGACGGCGGCGGGAGGAAGACCCAGTGGTGAGGTGGTGCCTTCTGATCTCTGGGCTTGGAGGAAGTACGGCCAGAAGCCTATCAAGGGCTCACCCTACCCAAGAGGCTATTATAGATGCAGCAGTTCAAAAGGTTGCTCTGCAAGGAAGCAAGTAGAGCGCAGCCGTACTGACCCAAACATGCTCGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCGACCCAGCGCAACGCCCTCGCCGGCTCAACCCGGTCTCACCACAGCAAGAACAGCGGCGGCGGCGGCGGCTCGGGTTCCAAGGGCTCTCAGAACGACAAGTCACAGCAGCAGCCAAGCGTTAAAGAAGAGCAGAAGGATCAGGCGACGACGGCGACGACGACGACCACCAGCACAATCACTACCACGAATAGTGCTTCTCCTGTGGTTGTGAAGGAGGAAGAGGCGGCACTGGCAGGATCGTCGGAAGCATTGGAGTTGGAGAGAGTCATGGACACTACTGCAGCTGGAGTAGTAGACCACAGTGAGCTCATGGATCATGTTTTCAGTGAGAGCTACAAGCCGATGATACCGGAGACTGGCCAGCCGGATGATTTCTTCGCAGACCTCGCCGAGTTGGAGTCAGATCCCATGAGCTTAATCTTCTCGAAGGAGTACATGGAAGCCAAGCCAAGTGGTGGCGATCATGCCCAGGAGAAGGCAATGGCCAAGGAATTGGATCCATTCGACATGCTAGACTGGTCTACTACTACTAACTCTTCGGCAGGGAGCTCATTTGAGCAAGGGAAGAGAGGCTAAACCCATGGGCATAAAGCCATGCATGAGGGTTTATGCATGCATACGGTTACATAAACTTGATCCCAGCTAATAACCATAAAGATTGTGACAATGTCAGCAAAGGAAAGATGAGATTTTTTTTTTTACTTTTCTTTTCTTCATTTGGTCTCTCTGCTTCTTCATATTATTGTGTGTGAGAATTAAATTTTGTTTCAAGGTCTAGGTATATGGACCTCATTTTTTAGGCTGTGTCAACTTGTTGTACTTATGCATGAGATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2666#0 CATGTGTGATTACTTCTTGCAACGGATAGAGGGGGAGCAGGCCGCCGGAGACCTCGCCGA 60
consensus_2666#1 ------------------------------------------------------------
consensus_2666#0 CATCGTCCTCCGCGCCGGCGGGGCTGCTGCTGCTGCTGTTGCGGGCGGCGGCATCCCGTC 120
consensus_2666#1 ------------------------------------------------------------
consensus_2666#0 GACGGAGTGGCAGCTACCACCGGCGGAGGAGGAGGAGGAAGAGCCGGGTCTCTTCCCGCT 180
consensus_2666#1 -----------------------------------------------------------T 1
*
consensus_2666#0 GCCGCCGTCGTCGTCGGATGGCTCCGGCATGAG-CGGCGCG-GATGCGTTCGGCGACCCG 238
consensus_2666#1 AAGCTAGCCATGTGCGACTACTTCCTGCAGAGGATGGAGGGCGACCAGGCCGGCGGCGAC 61
* * * ** * *** *** * ** * * ** * ***** *
consensus_2666#0 TTCGCTGGCCTCCCCGACCCCTTCGGTGGCGACTACCCCTCCTCTGGCGGAGCGGCGGCG 298
consensus_2666#1 CTCACCGACATCGTCCGCGCCGGGGGAGG-GGCCATGCC-------GGGGAGCGTCGTCG 113
** * * * ** * * ** ** ** * * * ** * ****** ** **
consensus_2666#0 GCCGCCGACTTCTTTGACG-CCGTCG--TGGCCAAGGCCGGGTTCGTCGACGTCGGTGTC 355
consensus_2666#1 TCGACC--TCCCGTCGACGGCCGCCGAGTGGCAGCTCCCGGCTGAGCCGATGCTCTTCCC 171
* ** * * **** *** ** **** **** * * *** * * *
consensus_2666#0 CTCGGTGGCGGCGGCGGCGGTGGCTGCG-ATGGAGGTGGCGTTGATGGTGGTGGAGGAGG 414
consensus_2666#1 GCCGCCGCCGTCGTTGTCGTCGACGACGGACGGCTGTGGCGCCGGGGGAGCGGCAGGCG- 230
** * ** ** * ** * * ** * ** ****** * ** * * *** *
consensus_2666#0 GTCGTCGCTGCTGGGCATGAGCAAGCCTATCTTGCCTAGGGCCGCCATGCAGTTGCCGTC 474
consensus_2666#1 -CCGACATCTTCGGCGGTGGCGGCGGCGACCTTTTCTCCGGCC-TCGTGGACCCGT---- 284
** * ** ** * * * *** ** **** * ** * *
consensus_2666#0 GGTGTCGCCGAGGGCGATACGGCCGTACCCCGTGATGGCCTGTGACACGGTGAAGCTCGG 534
consensus_2666#1 ----TCAGCAGCGACTACTCGTCCGG----CGCGGACTTCTTGGACGCCATGCCGGACGC 336
** * * * * ** *** ** * ** *** * ** * **
consensus_2666#0 CGCGCCGATGGCCGGCGGGCCGTGCGCGTTCGACGGCGCCGCCGCGGCAGGGCTGCACAT 594
consensus_2666#1 GATGGCGAAGGTCGGC------------TTCGACACAGCTGTCGTCGCCGGCATGCAGAT 384
* *** ** **** ****** ** * ** ** ** **** **
consensus_2666#0 GTCGTCGTCGCCGCGTGGCGCCGTCGGCGGGATCAAGCGCAGGAAGAACCAGGCTAGGAA 654
consensus_2666#1 GTCGTCGCCGCG---------CTCCGGCGGGATCAAGCGCAGGAAGAACCAGGCGAGGAA 435
******* *** * ****************************** *****
consensus_2666#0 GGTGGTGTGCATCCCAGCGCCTGCAGCAGCAGGAGGGAGGACCAGTGGGGAGGTTGTTCC 714
consensus_2666#1 GGTGGTGTGCATCCCGGCGCCGACGGCGGCGGGAGGAAGACCCAGTGGTGAGGTGGTGCC 495
*************** ***** * ** ** ***** ** ******* ***** ** **
consensus_2666#0 TTCCGATCTCTGGGCTTGGAGGAAGTATGGCCAGAAGCCTATCAAAGGCTCTCCTTACCC 774
consensus_2666#1 TTCTGATCTCTGGGCTTGGAGGAAGTACGGCCAGAAGCCTATCAAGGGCTCACCCTACCC 555
*** *********************** ***************** ***** ** *****
consensus_2666#0 AAGAGGGTACTACAGATGCAGCAGCTCGAAAGGATGCTCGGCGCGCAAGCAGGTGGAGCG 834
consensus_2666#1 AAGAGGCTATTATAGATGCAGCAGTTCAAAAGGTTGCTCTGCAAGGAAGCAAGTAGAGCG 615
****** ** ** *********** ** ***** ***** ** * ***** ** *****
consensus_2666#0 CAGCCGGACCGACCCCAACATGCTCGTCATCACCTACACGTCGGAGCACAACCACCCGTG 894
consensus_2666#1 CAGCCGTACTGACCCAAACATGCTCGTCATCACCTACACCTCGGAGCACAACCACCCATG 675
****** ** ***** *********************** ***************** **
consensus_2666#0 GCCGACGCAGCGCAACGCGCTCGCCGGCTCCACGCGGTCTCATCACGCCAAGAACAGCAG 954
consensus_2666#1 GCCGACCCAGCGCAACGCCCTCGCCGGCTCAACCCGGTCTCACCACAGCAAGAACAGCGG 735
****** *********** *********** ** ******** *** ********** *
consensus_2666#0 CAGCAACAGCAGC---AGCAGCGGCGCCTCCTCAGCCTCCAAGA-ACAACTCCTCCCACA 1010
consensus_2666#1 CGGCGGCGGCGGCTCGGGTTCCAAGGGCTCTCAGAACGACAAGTCACAGCAGCAGCCA-A 794
* ** * ** ** * * * *** * **** *** * * *** *
consensus_2666#0 GCGGTTACCACCACCACCACCACCAGAAGCCACTCGTCAAGGCGGAACCCAACGATCAAT 1070
consensus_2666#1 GCGTTAAAGAAGAGCAGAAGGATCAGGCGACGACGGCGACGACGACGACCACCAGCACAA 854
*** * * * * ** * * *** * * * * * ** *** * *
consensus_2666#0 CCGCCGCCGCCACGACCGCCGCCACGGTGCCGGTGAAAGAGGAGGCCGCCATGGTAGGGA 1130
consensus_2666#1 TCACTACCACGAATAGTGCTTCTCCTGTGGTTGTGAAGGAGGAAGAGGCGGCACTGGCAG 914
* * ** * * * ** * * *** ***** ***** * ** * *
consensus_2666#0 CGTCGTCGGAAGCATTGGCGAAGACGACGCAGAAATCCATGGAGGATGCTGCTGCTGCTG 1190
consensus_2666#1 GATCGTCGGAAGCATTGGAGT------TGGAGAGAGTCATGGACACTACTGCAGCTGG-- 966
**************** * * *** * ****** * **** ****
consensus_2666#0 CTTCAGCCACGGCGGCGGCGGTGGAGCACAGTGATCTCATGCAGCAGATGTTCAGCCAGA 1250
consensus_2666#1 ----------------AGTAGTAGACCACAGTGAGCTCATGGATCATGTTTTCAGTGAGA 1010
* ** ** ******** ****** * ** * ***** ***
consensus_2666#0 GCTACCGGCCGATGATACCGGAGGCAGCGGCCGGCGGCCACCACGACGACTTCTTCGCCG 1310
consensus_2666#1 GCTACAAGCCGATGATACCGGAGAC---------TGGCCAGCCGGATGATTTCTTCGCAG 1061
***** **************** * ***** * ** ** ******** *
consensus_2666#0 ACCTCGCCGAGTTGGAGTCAGATCCCATGAGCCTGATCTTCTCCAAGGAGTACATGGCGA 1370
consensus_2666#1 ACCTCGCCGAGTTGGAGTCAGATCCCATGAGCTTAATCTTCTCGAAGGAGTACATGGAAG 1121
******************************** * ******** *************
consensus_2666#0 CCAATTACAAGCCAGCAGGTGACCCAGCAGGCAAGGAGATGAATGCAGTAGACAAGGGCT 1430
consensus_2666#1 CC------AAGCCAAGTGGTGGCGATCATGCCCAGGAGAAG---GCAATGGCCAAGGAAT 1172
** ****** **** * * * ****** * *** * * ***** *
consensus_2666#0 TGGATCCAGCGTACATGCTGGATTGGTCTTCTACCACTGTTGTTACTAGAGCTGGTGGGA 1490
consensus_2666#1 TGGATCCATTCGACATGCTAGACTGGTCTACTACTACTAACTCTTCGGCAG------GGA 1226
******** ******* ** ****** **** *** * * ** ***
consensus_2666#0 GCTCATTTATGCAAGGGGAGGGAGGTTTATGACATTTTAATCACTTTGAAACAAAAGGCA 1550
consensus_2666#1 GCTCATTTGAGCAAGGGAAGAGAGGCTAAACCCATGGGCATAAAGCCATGCATGAGGGTT 1286
******** ******* ** **** * * *** ** * * **
consensus_2666#0 AAAGCTAGTATATGCGAA------------------------------------------ 1568
consensus_2666#1 TATGCATGCATACGGTTACATAAACTTGATCCCAGCTAATAACCATAAAGATTGTGACAA 1346
* ** * *** * *
consensus_2666#0 ------------------------------------------------------------
consensus_2666#1 TGTCAGCAAAGGAAAGATGAGATTTTTTTTTTTACTTTTCTTTTCTTCATTTGGTCTCTC 1406
consensus_2666#0 ------------------------------------------------------------
consensus_2666#1 TGCTTCTTCATATTATTGTGTGTGAGAATTAAATTTTGTTTCAAGGTCTAGGTATATGGA 1466
consensus_2666#0 ------------------------------------------------
consensus_2666#1 CCTCATTTTTTAGGCTGTGTCAACTTGTTGTACTTATGCATGAGATGA 1514
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||