These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [TTTTTTTTTTTTTGAGATAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCCTAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTCTTGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCGTCCAGAGGTTCTCCTCAAGTAGTAAGTGCAGCTTGTAAATACAATGCCCCCAATAGCACCAAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATTTGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGGCGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAGATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGCACCACTCTTACAGTAACCCATTTTGCTATGCTTGATCAGAATGGTTGGGTCAGAGCAATCAGAGCAGCATACAAATTCTTTGCCAAAATCCAGCTTGTTCCCCCTTGTCTGTCCT] [+] EMBL CA763388 [TTTTTTTTTTTTTGAGATAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCCTAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTCTTGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCGTCCAGAGGTTCTCCTCAAGTAGTAAGTGCAGCTTGTAAATACAATGCCCCCAATAGCACCAAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATTTGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGGCGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAGATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGCACCACTCTTACAGTAACCCATTTTGCTATGCTTGATCAGAATGGTTGGGTCAGAGCAATCAGAGCAGCATACAAATTCTTTGCCAAAATCCAGCTTGTTCCCCCTTGTCTGTCCT] consensusID : consensus_2682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [GATAAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCCTAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTATTGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCGTCCAGAGGTTCTCCTCAAGTAGTAAGTGTAGCTTGTAAATACAATGCCCCCAATAGCACCAAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATTTGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGGCATTTCATCTGCTGAACAGCTAGCATCATCTACAGGATAATGTTTGATTGTGGCATCAGATAAATTTCCATAACAAGCAACATCACGATACCGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAGATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGC] [-] EMBL AK062532 [GATAAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCCTAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTATTGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCGTCCAGAGGTTCTCCTCAAGTAGTAAGTGTAGCTTGTAAATACAATGCCCCCAATAGCACCAAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATTTGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGGCATTTCATCTGCTGAACAGCTAGCATCATCTACAGGATAATGTTTGATTGTGGCATCAGATAAATTTCCATAACAAGCAACATCACGATACCGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAGATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2682#0 TTTTTTTTTTTTTGAGATAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCC 60 consensus_2682#1 -------------GATA-AAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCC 46 ** * ****************************************** consensus_2682#0 TAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTCT 120 consensus_2682#1 TAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTAT 106 ********************************************************** * consensus_2682#0 TGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCG 180 consensus_2682#1 TGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCG 166 ************************************************************ consensus_2682#0 TCCAGAGGTTCTCCTCAAGTAGTAAGTGCAGCTTGTAAATACAATGCCCCCAATAGCACC 240 consensus_2682#1 TCCAGAGGTTCTCCTCAAGTAGTAAGTGTAGCTTGTAAATACAATGCCCCCAATAGCACC 226 **************************** ******************************* consensus_2682#0 AAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATT 300 consensus_2682#1 AAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATT 286 ************************************************************ consensus_2682#0 TGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGG 360 consensus_2682#1 TGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGG 346 ************************************************************ consensus_2682#0 CGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAG 420 consensus_2682#1 CAT-TTCATCTGCTGAACAGCTAGCA-----TCATCTACAGGATAATGTTTGATTGTGGC 400 * * * * * ** ** * ***** * * * * ** consensus_2682#0 ATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGCACCACTC-TTACAGTAACCCATTTT 479 consensus_2682#1 ATCAGATAAATTTCCATAACAAGCAACATCACGATACCGCACACCACCATCGCATGGCGA 460 ** * ** * * * * * * *** * * ** * * consensus_2682#0 GCTATGCTTGATCAGAATGGTTGGGTCAGAGCAATCAGAGCAGCATACAAATTCTTTGCC 539 consensus_2682#1 GGAGCACTTCATCC--ATGGTCCAG-CAACCCAATGATAG-ATTTCGTGTGGTTTTAACT 516 * *** *** ***** * ** **** * ** * * ** * consensus_2682#0 AAAATC-CAGCTTGTTCCCCCTTGTCTGTCCT 570 consensus_2682#1 GCATTGATAGCTCAGC---------------- 532 * * **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||