|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1273 fasta sequence
[TCCGCTCGTGTCGTGTGAAGCGGTGAACTTTAGCCGACTCCTGACTAGCGACTACCCTCCCACTCTCTCAGCTCGCTTCCCTTCCTCGCCTCGCCGGCCAAGAACCACCGCAAGATTCGCCATGGCCAGATCGCCGGAGCCGCCGCGCTACTACGCCGCCGCGGGCTACCACCGCCCCTCGCCCTTCTCCTCCGTGGCGGCGTCCTGCGTCGTGGCGGCGCTGTTCATCCTGCTCGCCGCGGGCGGCGCCGCGGCTGCGCTGTTCCTGCTCTACCGGCCGCAGGCGCCGGCCATCGCCGTGACGGCCGTGCAGCTCCCCTCCTTCGCCTCCCGCAACGGCACCGTCGCCTTCACGTTCCAGCAGCTCGCCTCCGTCCGCAACCCCAACCGCTCCCCGCTCGCGCACTACGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGGTCGGCTCGATGTACATCCCCGCCGGCCAGATCGACGGGGGGCGCACGCAGTACATGGCCACCAGCTTCACCGTCCCGGCCTTCGCCGTCACCTCCTCCGCCACCGCCGCCGCTTCCTCCTCCCCGGCGCAGACAATCACCGTCCCCGCCTCCGGCCCCTCACCGGCGGCGGTGGGCGCGGTGGCGCTGCAGCAAGAACAGCCGCCGCCGCAGCAGCAGCAGGTGGCGGCGCTGCCGGTGATGGAGGTGGACTCGCTGCTGGTGGTGAAAGGGAAGGTGACCATCCTCCGGGTGTTCACCCACCACGTCGTCGCCGCCAAGGTGTGCCGCATCGGCGTCTCGCCGGCGGACGGCCGCGTGCTCGGATTCCGGTGCTGACCAAGACCAGGCCAAGATCTGACTCTCCTCCATTTGCCCATTTTGGGGTTAATCGGTGGTGTCCCCTGTCAATCTCTTCAGTGAATTCGTGTCAAATTTGTAAGATAAGTTAGTTTGATTTGTAACTTAGAATTCTTCTTCTTTCTGTGATGATTTTCTGAGTGTGTATTTTTCTCTTGAATCTTCTCATCTTTGGTAGATTTCTGCAGCCTTCTTGTTGTAATTTTAATAGATTTTCTAGGTGTTTTCAGAGTCCAGGCCAAAGAAAGATTTGGTTCTTGAGATGTTCAGTTGGACAATTTGTTTTGCTAAGCAACCATAGTGAGGAAATTAAAGCTTATAATTACAATGTATTATCAAAATTATGTTTTGGACTTGTAATCTTATCCATTCTTGCAGAATAATTGTGACATTTTTGCATCGGAATCAGTTCCAGTTAGATGCTTATGA]
[+] EMBL AK073471 [TCCGCTCGTGTCGTGTGAAGCGGTGAACTTTAGCCGACTCCTGACTAGCGACTACCCTCCCACTCTCTCAGCTCGCTTCCCTTCCTCGCCTCGCCGGCCAAGAACCACCGCAAGATTCGCCATGGCCAGATCGCCGGAGCCGCCGCGCTACTACGCCGCCGCGGGCTACCACCGCCCCTCGCCCTTCTCCTCCGTGGCGGCGTCCTGCGTCGTGGCGGCGCTGTTCATCCTGCTCGCCGCGGGCGGCGCCGCGGCTGCGCTGTTCCTGCTCTACCGGCCGCAGGCGCCGGCCATCGCCGTGACGGCCGTGCAGCTCCCCTCCTTCGCCTCCCGCAACGGCACCGTCGCCTTCACGTTCCAGCAGCTCGCCTCCGTCCGCAACCCCAACCGCTCCCCGCTCGCGCACTACGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGGTCGGCTCGATGTACATCCCCGCCGGCCAGATCGACGGGGGGCGCACGCAGTACATGGCCACCAGCTTCACCGTCCCGGCCTTCGCCGTCACCTCCTCCGCCACCGCCGCCGCTTCCTCCTCCCCGGCGCAGACAATCACCGTCCCCGCCTCCGGCCCCTCACCGGCGGCGGTGGGCGCGGTGGCGCTGCAGCAAGAACAGCCGCCGCCGCAGCAGCAGCAGGTGGCGGCGCTGCCGGTGATGGAGGTGGACTCGCTGCTGGTGGTGAAAGGGAAGGTGACCATCCTCCGGGTGTTCACCCACCACGTCGTCGCCGCCAAGGTGTGCCGCATCGGCGTCTCGCCGGCGGACGGCCGCGTGCTCGGATTCCGGTGCTGACCAAGACCAGGCCAAGATCTGACTCTCCTCCATTTGCCCATTTTGGGGTTAATCGGTGGTGTCCCCTGTCAATCTCTTCAGTGAATTCGTGTCAAATTTGTAAGATAAGTTAGTTTGATTTGTAACTTAGAATTCTTCTTCTTTCTGTGATGATTTTCTGAGTGTGTATTTTTCTCTTGAATCTTCTCATCTTTGGTAGATTTCTGCAGCCTTCTTGTTGTAATTTTAATAGATTTTCTAGGTGTTTTCAGAGTCCAGGCCAAAGAAAGATTTGGTTCTTGAGATGTTCAGTTGGACAATTTGTTTTGCTAAGCAACCATAGTGAGGAAATTAAAGCTTATAATTACAATGTATTATCAAAATTATGTTTTGGACTTGTAATCTTATCCATTCTTGCAGAATAATTGTGACATTTTTGCATCGGAATCAGTTCCAGTTAGATGCTTATGA]
consensusID : consensus_2689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1001 fasta sequence
[TTCCCACTCACCACGCATGCAGCCGCCGCCAAGAACCCGCGATCCGGCCATCGCCATCGCCGGCGACGGCGCGGCGCGGCGAGGTCCCCCGCCGATGCAGCCGCCCGGGCCGCCGCCGGTAAGGCATGGTCCGCCGCCGGTGCGGCAGCAGCACGGCTACTACTACGAGGAGGAGCAGAGGCCGCTGCACCTGCACGTGAGGACGGCGAGGTCGTCGTCGTCGGCGCTGGCGTCGTGCCTCGTGGCGGCGGCGTTCCTGGCGCTGGCGGTGGGCGGGGCGGGGGCGGCGCTGTTCGTGCTGTTCCGGCCGCGCCCGCCCGACATCGCGGTGGCGGCGGTGCGGCTGCCGGCGTTCGCGTCCGGCCCGAACGGCACGGTGGCGTTCACGTTCGAGCAGACGGCCGCCGTGCGCAACCCCAACCGCGCGCCGCTCGCGCACTTCGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGCTCGGCTCCGTCTACATCCCCGCCGGCCTCATCGACGGTGGCCGCACCAAGGACATGTCCGCCAGCTTCGCCGTCCCGGCGTTCGCCGCGGCCACCCCGCCGTCGCTGCCTCAGGAGCAGATGGCCGCCGCCGCCGCCGCCTCGGCGCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGTGATGGAGGTCGACTCGCTGCTGGTGGTCAAGGGGAGGGTGACCGTGCTGCGTGTGCTGACGCACCACGTCGAGGCGGCCAAGGTGTGCCGCGTCGGCGTCTCGCCGGTGGACGGCAAGGTGCTCGGCTTCCGGTGCTGAACACCACTATGGATTTGGATTTGGATGAAATCCAAATTAAGCCGAAATTTTGCGGGAAAGAATGTAATTTAATTTAAATTCTGCAGAAACCAAGCATTCCCGTTAAGTTTCTGAGCTCCAAACTGGTGGTGTAATGGTAGATGATGATATACTATGTAATATGTTCCATTCTTAAGACACGGTGAAATACCAGAGTATCAGTAGC]
[+] EMBL AK108936 [TTCCCACTCACCACGCATGCAGCCGCCGCCAAGAACCCGCGATCCGGCCATCGCCATCGCCGGCGACGGCGCGGCGCGGCGAGGTCCCCCGCCGATGCAGCCGCCCGGGCCGCCGCCGGTAAGGCATGGTCCGCCGCCGGTGCGGCAGCAGCACGGCTACTACTACGAGGAGGAGCAGAGGCCGCTGCACCTGCACGTGAGGACGGCGAGGTCGTCGTCGTCGGCGCTGGCGTCGTGCCTCGTGGCGGCGGCGTTCCTGGCGCTGGCGGTGGGCGGGGCGGGGGCGGCGCTGTTCGTGCTGTTCCGGCCGCGCCCGCCCGACATCGCGGTGGCGGCGGTGCGGCTGCCGGCGTTCGCGTCCGGCCCGAACGGCACGGTGGCGTTCACGTTCGAGCAGACGGCCGCCGTGCGCAACCCCAACCGCGCGCCGCTCGCGCACTTCGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGCTCGGCTCCGTCTACATCCCCGCCGGCCTCATCGACGGTGGCCGCACCAAGGACATGTCCGCCAGCTTCGCCGTCCCGGCGTTCGCCGCGGCCACCCCGCCGTCGCTGCCTCAGGAGCAGATGGCCGCCGCCGCCGCCGCCTCGGCGCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGTGATGGAGGTCGACTCGCTGCTGGTGGTCAAGGGGAGGGTGACCGTGCTGCGTGTGCTGACGCACCACGTCGAGGCGGCCAAGGTGTGCCGCGTCGGCGTCTCGCCGGTGGACGGCAAGGTGCTCGGCTTCCGGTGCTGAACACCACTATGGATTTGGATTTGGATGAAATCCAAATTAAGCCGAAATTTTGCGGGAAAGAATGTAATTTAATTTAAATTCTGCAGAAACCAAGCATTCCCGTTAAGTTTCTGAGCTCCAAACTGGTGGTGTAATGGTAGATGATGATATACTATGTAATATGTTCCATTCTTAAGACACGGTGAAATACCAGAGTATCAGTAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2689#0 --TCCGCTCGTGTCGTGTGAAGCGGTGAACTTTAGCCGACT-CCTGACTAGCGACTACCC 57
consensus_2689#1 TTCCCACTCACCACGCATGCAGCCGCCGCCAAGAACCCGCGATCCGGCCATCGCCATCGC 60
** *** ** ** *** * * * ** * * * * * ** * * *
consensus_2689#0 TCCCACTCTCTCAGCTCGCTTCCCTTCCTCGCCTCGCCGGCCAA--GAACCACCGCAAGA 115
consensus_2689#1 CGGCGACGGCGCGGCGCGGCGAGGTCCCCCGCCGATGCAGCCGCCCGGGCCGCCGCC-GG 119
* * * ** ** * ** **** * *** * ** **** *
consensus_2689#0 TTCGCCATGGCCAGATCGCCGGAGCCGCCGC------GCTACTACGCCGCCGCGGGCTA- 168
consensus_2689#1 TAAGGCATGGTCCG-CCGCCGGTGCGGCAGCAGCACGGCTACTACTACGAGGAGGAGCAG 178
* * ***** * * ****** ** ** ** ******** ** * ** *
consensus_2689#0 ---CCACCGCCCCTC-----------------GCCCTTCTCCTCCGTGGCGGCGTCCTGC 208
consensus_2689#1 AGGCCGCTGCACCTGCACGTGAGGACGGCGAGGTCGTCGTCGTCGGCGCTGGCGTCGTGC 238
** * ** *** * * * ** ** * * ****** ***
consensus_2689#0 GTCGTGGCGGCGCTGTTCATCCTGCTCGCCGCGGGCGGCGCCGCGGCTGCGCTGTTCCTG 268
consensus_2689#1 CTCGTGGCGGCGGCGTTCCTGGCGCTGGCGGTGGGCGGGGCGGGGGCGGCGCTGTTCGTG 298
*********** **** * *** ** * ****** ** * *** ********* **
consensus_2689#0 CTCTACCGGCCGCAGGCGCCGGCCATCGCCGTGACGGCCGTGCAGCTCCCCTCCTTCGCC 328
consensus_2689#1 CTGTTCCGGCCGCGCCCGCCCGACATCGCGGTGGCGGCGGTGCGGCTGCCGGCGTTCGCG 358
** * ******** **** * ****** *** **** **** *** ** * *****
consensus_2689#0 TCCCGC---AACGGCACCGTCGCCTTCACGTTCCAGCAGCTCGCCTCCGTCCGCAACCCC 385
consensus_2689#1 TCCGGCCCGAACGGCACGGTGGCGTTCACGTTCGAGCAGACGGCCGCCGTGCGCAACCCC 418
*** ** ******** ** ** ********* ***** *** **** *********
consensus_2689#0 AACCGCTCCCCGCTCGCGCACTACGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAG 445
consensus_2689#1 AACCGCGCGCCGCTCGCGCACTTCGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAG 478
****** * ************* *************************************
consensus_2689#0 GTCGGCTCGATGTACATCCCCGCCGGCCAGATCGACGGGGGGCGCACGCAGTACATGGCC 505
consensus_2689#1 CTCGGCTCCGTCTACATCCCCGCCGGCCTCATCGACGGTGGCCGCACCAAGGACATGTCC 538
******* * **************** ******** ** ***** ** ***** **
consensus_2689#0 ACCAGCTTCACCGTCCCGGCCTTCGCCGTCACCTCCTCCGCCACCGCCGCCGCTTCCTCC 565
consensus_2689#1 GCCAGCTTCGCCGTCCCGGCGTTCGCCGCGGCCACC-------CCGCCGTCGCTGCCTCA 591
******** ********** ******* ** ** ****** **** ****
consensus_2689#0 TCCCCGGCGCAGACAATCACCGTCCCCGCCTCCGGCCCCTCACCGGCGGCGGTGGGCGCG 625
consensus_2689#1 -----GGAGCAGATGGCCGCCGCCGCCGCCGCC--------------------------- 619
** ***** * *** * ***** **
consensus_2689#0 GTGGCGCTGCAGCAAGAACAGCCGCCGCCGCAGCAGCAGCAGGTGGCGGCGCTGCCGGTG 685
consensus_2689#1 ---------------------TCGGCGCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGTG 658
** *** *********** ** ******* * *****
consensus_2689#0 ATGGAGGTGGACTCGCTGCTGGTGGTGAAAGGGAAGGTGACCATCCTCCGGGTGTTCACC 745
consensus_2689#1 ATGGAGGTCGACTCGCTGCTGGTGGTCAAGGGGAGGGTGACCGTGCTGCGTGTGCTGACG 718
******** ***************** ** **** ******* * ** ** *** * **
consensus_2689#0 CACCACGTCGTCGCCGCCAAGGTGTGCCGCATCGGCGTCTCGCCGGCGGACGGCCGCGTG 805
consensus_2689#1 CACCACGTCGAGGCGGCCAAGGTGTGCCGCGTCGGCGTCTCGCCGGTGGACGGCAAGGTG 778
********** ** *************** *************** ******* ***
consensus_2689#0 CTCGGATTCCGGTGCTGACCAAGACCA--GGCCAAGATCTGACTCTCCTCCA--TTTGCC 861
consensus_2689#1 CTCGGCTTCCGGTGCTGAACACCACTATGGATTTGGATTTGGATGAAATCCAAATTAAGC 838
***** ************ ** ** * * *** ** * **** ** *
consensus_2689#0 C---ATTTTGGGGTTAATCGGTGGTGTCCCCTGTCAATCTCTTCAGTGAATTCGTGTCAA 918
consensus_2689#1 CGAAATTTTGCGGGAAA--GAATGTAATTTAATTTAAATTCTGCAGAAA-------CCAA 889
* ****** ** ** * ** * ** *** *** * ***
consensus_2689#0 ATTTGTAAGATAAGTTAGTTTGATTTGTAACTTAGAATTCTTCTTCTTTCTGTGATGATT 978
consensus_2689#1 GCATTCCCGTTAAGTT--TCTGAGCTCCAAACTGGTGGTGTAATGGTAG--ATGATGATA 945
* * ****** * *** * ** * * * * * * *******
consensus_2689#0 TTCTGAGTG-TGTATTTTTCTCTTGAATCTTCTCATCTTTGGTAGATTTCTGCAGCCTTC 1037
consensus_2689#1 TACTATGTAATATGTTCCATTCTTAAGACACGGTGAAATACCAGAGTATCAGTAGC---- 1001
* ** ** * * ** **** * * * * ** * ***
consensus_2689#0 TTGTTGTAATTTTAATAGATTTTCTAGGTGTTTTCAGAGTCCAGGCCAAAGAAAGATTTG 1097
consensus_2689#1 ------------------------------------------------------------
consensus_2689#0 GTTCTTGAGATGTTCAGTTGGACAATTTGTTTTGCTAAGCAACCATAGTGAGGAAATTAA 1157
consensus_2689#1 ------------------------------------------------------------
consensus_2689#0 AGCTTATAATTACAATGTATTATCAAAATTATGTTTTGGACTTGTAATCTTATCCATTCT 1217
consensus_2689#1 ------------------------------------------------------------
consensus_2689#0 TGCAGAATAATTGTGACATTTTTGCATCGGAATCAGTTCCAGTTAGATGCTTATGA 1273
consensus_2689#1 --------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||