|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1751 fasta sequence
[CTGAAGCTTAACCAAAGCTTAAACCCAAAGCAAACCAGAGGCAGATCAGATCAGAGCTAGTAGCAGCAAGCTCGCGATCTCCCCCACCTTCTAGAACCTTCTAGAACCGCCGAATGCCGCTCCACCACCACCGCCACCACCACCACTCCGCCGCCGTCGCCGTCGCCGTAGCCGACGACGACGACGAGGCCAAGCCGCGCCGCCCCTACTCCACCTTCGCCTCCCCGCGCGCGCCCACCTCCGCCTTCTCCGCCGCCTTCTCAACCCACCGCCTCCTCGTCCTCTTCTCCGTCGCCTGCCTCCTCGTCGCCGCGGCCTCCCTCGCCTTCGCCTTCTCCGCCCGCGCCGCGACCCTGCAGCCGCCGCCCCTCGCCGCCGTGGCCGAAGCCACCGCCAAGGTCGCCTTCCGCTGCGGCCGCGCCGAGGACACCCTCCGCGCCTTCCTCGCCTCCTCCTCGGGGAACTACTCCTCCGCGGCGGAGGGGAGGGAGAGGGAGAAGGTGCTCGCCGTCGTCGGGGTGCACACGGAGATCGGATCCGCCGCCCGCCGCGCCGCGCTCCGGGCCACCTGGTTCCCGCCCAAGCCCGAAGGCATCGTAAGTTTGGAACATGGAACTGGTTTATCTTTTAGGTTTGTTGTTGGACGAACCAAAGATAAAGAAAAAATGGCAGATCTTCAGAAAGAGGTAGACATGTATCATGATTTCTTGTTTGTTGATGCTGAAGAAGATACAAAGCCCCCACAGAAAATGTTAGCGTTTTTCAAAGCAGCTTATGACATGTTCGACGCAGATTTCTATGTCAAAGCTGATGATGCTATCTATCTGCGCCCAGATAGACTCGCTGCTCTTCTTGCAAAGGACAGGCTTCATCAGCGGACATACATTGGTTGCATGAAAAAGGGTCCAGTTGTCAATGACCCAAATATGAAGTGGTATGAAAGTTCGTGGGAATTATTAGGCAATGAGTACTTCAGTCATGCATCTGGTTTACTATATGCTCTTTCTTCGGAGGTGGTTGGATCTCTAGCTGCTACAAATAATGATAGTTTAAGGATGTTTGATTACGAAGATGTTACTATTGGATCATGGATGCTTGCCATGAATGTAAAGCATGAAGACAACCGTGCAATGTGCGATTCGGCATGCACTCCCACCTCCATTGCTGTATGGGACAGCAAGAAATGTTCAAATTCATGTAACACAACTGAGATAGTAAAGGCGCTTCACAACACTACCTTGTGCTCAAAGAGCCCTACATTGCCACCTGAGGTGGAGGATGAGTAGAACCTTAGTGTTATTTTTTTTCCCGTCAACAGATGCCAGCTTCTTGTTGCTGAGAGTTCTCCGAGAAGTGTACCATCGCGAGAATGATGTAGGATTTGTGTGCACACTCCCGATATTGGGATAAGCGAACAAGACAATATGTAGGTTCAGGCAAAATGTATACTCCCGACTGATAGAAGTGGGAACATTTGTTGTCTTATGTGCCATAGCCGATTCTGGCCATCGATTCTTTCACTGGCTATGTTGTTCATTGATGTGTATATAACCATATATATACCCCAGTCTGCATTGTTGATCATGAACTTCATTTCATGATCATGGATAACTCCAGCTTATTTGGATTGATGTGTTCTCATAGAACCAGAACCCAGCTTATGTCCGGTCGGAGTAATAATGACCAATTCATGTTGCTGATTACACTCCTGAGATATGATTATCTGAAGTAAGGACCAATTTATGTTGCTG]
[+] EMBL AK063280 [CTGAAGCTTAACCAAAGCTTAAACCCAAAGCAAACCAGAGGCAGATCAGATCAGAGCTAGTAGCAGCAAGCTCGCGATCTCCCCCACCTTCTAGAACCTTCTAGAACCGCCGAATGCCGCTCCACCACCACCGCCACCACCACCACTCCGCCGCCGTCGCCGTCGCCGTAGCCGACGACGACGACGAGGCCAAGCCGCGCCGCCCCTACTCCACCTTCGCCTCCCCGCGCGCGCCCACCTCCGCCTTCTCCGCCGCCTTCTCAACCCACCGCCTCCTCGTCCTCTTCTCCGTCGCCTGCCTCCTCGTCGCCGCGGCCTCCCTCGCCTTCGCCTTCTCCGCCCGCGCCGCGACCCTGCAGCCGCCGCCCCTCGCCGCCGTGGCCGAAGCCACCGCCAAGGTCGCCTTCCGCTGCGGCCGCGCCGAGGACACCCTCCGCGCCTTCCTCGCCTCCTCCTCGGGGAACTACTCCTCCGCGGCGGAGGGGAGGGAGAGGGAGAAGGTGCTCGCCGTCGTCGGGGTGCACACGGAGATCGGATCCGCCGCCCGCCGCGCCGCGCTCCGGGCCACCTGGTTCCCGCCCAAGCCCGAAGGCATCGTAAGTTTGGAACATGGAACTGGTTTATCTTTTAGGTTTGTTGTTGGACGAACCAAAGATAAAGAAAAAATGGCAGATCTTCAGAAAGAGGTAGACATGTATCATGATTTCTTGTTTGTTGATGCTGAAGAAGATACAAAGCCCCCACAGAAAATGTTAGCGTTTTTCAAAGCAGCTTATGACATGTTCGACGCAGATTTCTATGTCAAAGCTGATGATGCTATCTATCTGCGCCCAGATAGACTCGCTGCTCTTCTTGCAAAGGACAGGCTTCATCAGCGGACATACATTGGTTGCATGAAAAAGGGTCCAGTTGTCAATGACCCAAATATGAAGTGGTATGAAAGTTCGTGGGAATTATTAGGCAATGAGTACTTCAGTCATGCATCTGGTTTACTATATGCTCTTTCTTCGGAGGTGGTTGGATCTCTAGCTGCTACAAATAATGATAGTTTAAGGATGTTTGATTACGAAGATGTTACTATTGGATCATGGATGCTTGCCATGAATGTAAAGCATGAAGACAACCGTGCAATGTGCGATTCGGCATGCACTCCCACCTCCATTGCTGTATGGGACAGCAAGAAATGTTCAAATTCATGTAACACAACTGAGATAGTAAAGGCGCTTCACAACACTACCTTGTGCTCAAAGAGCCCTACATTGCCACCTGAGGTGGAGGATGAGTAGAACCTTAGTGTTATTTTTTTTCCCGTCAACAGATGCCAGCTTCTTGTTGCTGAGAGTTCTCCGAGAAGTGTACCATCGCGAGAATGATGTAGGATTTGTGTGCACACTCCCGATATTGGGATAAGCGAACAAGACAATATGTAGGTTCAGGCAAAATGTATACTCCCGACTGATAGAAGTGGGAACATTTGTTGTCTTATGTGCCATAGCCGATTCTGGCCATCGATTCTTTCACTGGCTATGTTGTTCATTGATGTGTATATAACCATATATATACCCCAGTCTGCATTGTTGATCATGAACTTCATTTCATGATCATGGATAACTCCAGCTTATTTGGATTGATGTGTTCTCATAGAACCAGAACCCAGCTTATGTCCGGTCGGAGTAATAATGACCAATTCATGTTGCTGATTACACTCCTGAGATATGATTATCTGAAGTAAGGACCAATTTATGTTGCTG]
consensusID : consensus_269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1602 fasta sequence
[CTGAAGCTTAACCAAAGCTTAAACCCAAAGCAAACCAGAGGCAGATCAGATCAGAGCTAGTAGCAGCAAGCTCGCGATCTCCCCCACCTTCTAGAACCTTCTAGAACCGCCGAATGCCGCTCCACCACCACCGCCACCACCACCACTCCGCCGCCGTCGCCGTCGCCGTAGCCGACGACGACGACGAGGCCAAGCCGCGCCGCCCCTACTCCACCTTCGCCTCCCCGCGCGCGCCCACCTCCGCCTTCTCCGCCGCCTTCTCAACCCACCGCCTCCTCGTCCTCTTCTCCGTCGCCTGCCTCCTCGTCGCCGCGGCCTCCCTCGCCTTCGCCTTCTCCGCCCGCGCCGCGACCCTGCAGCCGCCGCCCCTCGCCGCCGTGGCCGAAGCCACCGCCAAGGTCGCCTTCCGCTGCGGCCGCGCCGAGGACACCCTCCGCGCCTTCCTCGCCTCCTCCTCGGGGAACTACTCCTCCGCGGCGGAGGGGAGGGAGAGGGAGAAGGTGCTCGCCGTCGTCGGGGTGCACACGGAGATCGGATCCGCCGCCCGCCGCGCCGCGCTCCGGGCCACCTGGTTCCCGCCCAAGCCCGAAGGCATCGTAAGTTTGGAACATGGAACTGGTTTATCTTTTAGGTTTGTTGTTGGACGAACCAAAGATAAAGAAAAAATGGCAGATCTTCAGAAAGAGGTAGACATGTATCATGATTTCTTGTTTGTTGATGCTGAAGAAGATACAAAGCCCCCACAGAAAATGTTAGCGTTTTTCAAAGCAGCTTATGACATGTTCGACGCAGATTTCTATGTCAAAGCTGATGATGCTATCTATCTGCGCCCAGATAGACTCGCTGCTCTTCTTGCAAAGGACAGGCTTCATCAGCGGACATACATTGGTTGCATGAAAAAGGGTCCAGTTGTCAATGACCCAAATATGAAGTGGTATGAAAGTTCGTGGGAATTATTAGGCAATGAGTACTTCAGTCATGCATCTGGTTTACTATATGCTCTTTCTTCGGAGGTGGTTGGATCTCTAGCTGCTACAAATAATGATAGTTTAAGGATGTTTGATTACGAAGATGTTACTATTGGATCATGGATGCTTGCCATGAATGTAAAGCATGAAGACAACCGTGCAATGTGCGATTCGGCATGCACTCCCACCTCCATTGCTGTATGGGACAGCAAGAAATGTTCAAATTCATGTAACACAACTGAGATAGTAAAGGCGCTTCACAACACTACCTTGTGCTCAAAGAGCCCTACATTGCCACCTGAGGTGGAGGATGAGTAGAACCTTAGTGTTATTTTTTTTCCCGTCAACAGATGCCAGGTATTGCCTGTCGTAACATCTGATTTCTAGTTAAATGTATTTCCATACCGTTGTATTCATTGGTGAACTCATCTGAGAGCCATACTGTTGCAGCTTCTTGTTGCTGAGAGTTCTCCGAGAAGTGTACCATCGCGAGAATGATGTAGGATTTGTGTGCACACTCCCGATATTGGGATAAGCGAACAAGACAATATGTAGGTTCAGGCAAAATGTATACTCCCGACTGATAGAAGTGGGAACATTTGTTGTCTTATGTGCCATAGCCGATTCTGGCCAT]
[+] EMBL AK063319 [CTGAAGCTTAACCAAAGCTTAAACCCAAAGCAAACCAGAGGCAGATCAGATCAGAGCTAGTAGCAGCAAGCTCGCGATCTCCCCCACCTTCTAGAACCTTCTAGAACCGCCGAATGCCGCTCCACCACCACCGCCACCACCACCACTCCGCCGCCGTCGCCGTCGCCGTAGCCGACGACGACGACGAGGCCAAGCCGCGCCGCCCCTACTCCACCTTCGCCTCCCCGCGCGCGCCCACCTCCGCCTTCTCCGCCGCCTTCTCAACCCACCGCCTCCTCGTCCTCTTCTCCGTCGCCTGCCTCCTCGTCGCCGCGGCCTCCCTCGCCTTCGCCTTCTCCGCCCGCGCCGCGACCCTGCAGCCGCCGCCCCTCGCCGCCGTGGCCGAAGCCACCGCCAAGGTCGCCTTCCGCTGCGGCCGCGCCGAGGACACCCTCCGCGCCTTCCTCGCCTCCTCCTCGGGGAACTACTCCTCCGCGGCGGAGGGGAGGGAGAGGGAGAAGGTGCTCGCCGTCGTCGGGGTGCACACGGAGATCGGATCCGCCGCCCGCCGCGCCGCGCTCCGGGCCACCTGGTTCCCGCCCAAGCCCGAAGGCATCGTAAGTTTGGAACATGGAACTGGTTTATCTTTTAGGTTTGTTGTTGGACGAACCAAAGATAAAGAAAAAATGGCAGATCTTCAGAAAGAGGTAGACATGTATCATGATTTCTTGTTTGTTGATGCTGAAGAAGATACAAAGCCCCCACAGAAAATGTTAGCGTTTTTCAAAGCAGCTTATGACATGTTCGACGCAGATTTCTATGTCAAAGCTGATGATGCTATCTATCTGCGCCCAGATAGACTCGCTGCTCTTCTTGCAAAGGACAGGCTTCATCAGCGGACATACATTGGTTGCATGAAAAAGGGTCCAGTTGTCAATGACCCAAATATGAAGTGGTATGAAAGTTCGTGGGAATTATTAGGCAATGAGTACTTCAGTCATGCATCTGGTTTACTATATGCTCTTTCTTCGGAGGTGGTTGGATCTCTAGCTGCTACAAATAATGATAGTTTAAGGATGTTTGATTACGAAGATGTTACTATTGGATCATGGATGCTTGCCATGAATGTAAAGCATGAAGACAACCGTGCAATGTGCGATTCGGCATGCACTCCCACCTCCATTGCTGTATGGGACAGCAAGAAATGTTCAAATTCATGTAACACAACTGAGATAGTAAAGGCGCTTCACAACACTACCTTGTGCTCAAAGAGCCCTACATTGCCACCTGAGGTGGAGGATGAGTAGAACCTTAGTGTTATTTTTTTTCCCGTCAACAGATGCCAGGTATTGCCTGTCGTAACATCTGATTTCTAGTTAAATGTATTTCCATACCGTTGTATTCATTGGTGAACTCATCTGAGAGCCATACTGTTGCAGCTTCTTGTTGCTGAGAGTTCTCCGAGAAGTGTACCATCGCGAGAATGATGTAGGATTTGTGTGCACACTCCCGATATTGGGATAAGCGAACAAGACAATATGTAGGTTCAGGCAAAATGTATACTCCCGACTGATAGAAGTGGGAACATTTGTTGTCTTATGTGCCATAGCCGATTCTGGCCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_269#0 CTGAAGCTTAACCAAAGCTTAAACCCAAAGCAAACCAGAGGCAGATCAGATCAGAGCTAG 60
consensus_269#1 CTGAAGCTTAACCAAAGCTTAAACCCAAAGCAAACCAGAGGCAGATCAGATCAGAGCTAG 60
************************************************************
consensus_269#0 TAGCAGCAAGCTCGCGATCTCCCCCACCTTCTAGAACCTTCTAGAACCGCCGAATGCCGC 120
consensus_269#1 TAGCAGCAAGCTCGCGATCTCCCCCACCTTCTAGAACCTTCTAGAACCGCCGAATGCCGC 120
************************************************************
consensus_269#0 TCCACCACCACCGCCACCACCACCACTCCGCCGCCGTCGCCGTCGCCGTAGCCGACGACG 180
consensus_269#1 TCCACCACCACCGCCACCACCACCACTCCGCCGCCGTCGCCGTCGCCGTAGCCGACGACG 180
************************************************************
consensus_269#0 ACGACGAGGCCAAGCCGCGCCGCCCCTACTCCACCTTCGCCTCCCCGCGCGCGCCCACCT 240
consensus_269#1 ACGACGAGGCCAAGCCGCGCCGCCCCTACTCCACCTTCGCCTCCCCGCGCGCGCCCACCT 240
************************************************************
consensus_269#0 CCGCCTTCTCCGCCGCCTTCTCAACCCACCGCCTCCTCGTCCTCTTCTCCGTCGCCTGCC 300
consensus_269#1 CCGCCTTCTCCGCCGCCTTCTCAACCCACCGCCTCCTCGTCCTCTTCTCCGTCGCCTGCC 300
************************************************************
consensus_269#0 TCCTCGTCGCCGCGGCCTCCCTCGCCTTCGCCTTCTCCGCCCGCGCCGCGACCCTGCAGC 360
consensus_269#1 TCCTCGTCGCCGCGGCCTCCCTCGCCTTCGCCTTCTCCGCCCGCGCCGCGACCCTGCAGC 360
************************************************************
consensus_269#0 CGCCGCCCCTCGCCGCCGTGGCCGAAGCCACCGCCAAGGTCGCCTTCCGCTGCGGCCGCG 420
consensus_269#1 CGCCGCCCCTCGCCGCCGTGGCCGAAGCCACCGCCAAGGTCGCCTTCCGCTGCGGCCGCG 420
************************************************************
consensus_269#0 CCGAGGACACCCTCCGCGCCTTCCTCGCCTCCTCCTCGGGGAACTACTCCTCCGCGGCGG 480
consensus_269#1 CCGAGGACACCCTCCGCGCCTTCCTCGCCTCCTCCTCGGGGAACTACTCCTCCGCGGCGG 480
************************************************************
consensus_269#0 AGGGGAGGGAGAGGGAGAAGGTGCTCGCCGTCGTCGGGGTGCACACGGAGATCGGATCCG 540
consensus_269#1 AGGGGAGGGAGAGGGAGAAGGTGCTCGCCGTCGTCGGGGTGCACACGGAGATCGGATCCG 540
************************************************************
consensus_269#0 CCGCCCGCCGCGCCGCGCTCCGGGCCACCTGGTTCCCGCCCAAGCCCGAAGGCATCGTAA 600
consensus_269#1 CCGCCCGCCGCGCCGCGCTCCGGGCCACCTGGTTCCCGCCCAAGCCCGAAGGCATCGTAA 600
************************************************************
consensus_269#0 GTTTGGAACATGGAACTGGTTTATCTTTTAGGTTTGTTGTTGGACGAACCAAAGATAAAG 660
consensus_269#1 GTTTGGAACATGGAACTGGTTTATCTTTTAGGTTTGTTGTTGGACGAACCAAAGATAAAG 660
************************************************************
consensus_269#0 AAAAAATGGCAGATCTTCAGAAAGAGGTAGACATGTATCATGATTTCTTGTTTGTTGATG 720
consensus_269#1 AAAAAATGGCAGATCTTCAGAAAGAGGTAGACATGTATCATGATTTCTTGTTTGTTGATG 720
************************************************************
consensus_269#0 CTGAAGAAGATACAAAGCCCCCACAGAAAATGTTAGCGTTTTTCAAAGCAGCTTATGACA 780
consensus_269#1 CTGAAGAAGATACAAAGCCCCCACAGAAAATGTTAGCGTTTTTCAAAGCAGCTTATGACA 780
************************************************************
consensus_269#0 TGTTCGACGCAGATTTCTATGTCAAAGCTGATGATGCTATCTATCTGCGCCCAGATAGAC 840
consensus_269#1 TGTTCGACGCAGATTTCTATGTCAAAGCTGATGATGCTATCTATCTGCGCCCAGATAGAC 840
************************************************************
consensus_269#0 TCGCTGCTCTTCTTGCAAAGGACAGGCTTCATCAGCGGACATACATTGGTTGCATGAAAA 900
consensus_269#1 TCGCTGCTCTTCTTGCAAAGGACAGGCTTCATCAGCGGACATACATTGGTTGCATGAAAA 900
************************************************************
consensus_269#0 AGGGTCCAGTTGTCAATGACCCAAATATGAAGTGGTATGAAAGTTCGTGGGAATTATTAG 960
consensus_269#1 AGGGTCCAGTTGTCAATGACCCAAATATGAAGTGGTATGAAAGTTCGTGGGAATTATTAG 960
************************************************************
consensus_269#0 GCAATGAGTACTTCAGTCATGCATCTGGTTTACTATATGCTCTTTCTTCGGAGGTGGTTG 1020
consensus_269#1 GCAATGAGTACTTCAGTCATGCATCTGGTTTACTATATGCTCTTTCTTCGGAGGTGGTTG 1020
************************************************************
consensus_269#0 GATCTCTAGCTGCTACAAATAATGATAGTTTAAGGATGTTTGATTACGAAGATGTTACTA 1080
consensus_269#1 GATCTCTAGCTGCTACAAATAATGATAGTTTAAGGATGTTTGATTACGAAGATGTTACTA 1080
************************************************************
consensus_269#0 TTGGATCATGGATGCTTGCCATGAATGTAAAGCATGAAGACAACCGTGCAATGTGCGATT 1140
consensus_269#1 TTGGATCATGGATGCTTGCCATGAATGTAAAGCATGAAGACAACCGTGCAATGTGCGATT 1140
************************************************************
consensus_269#0 CGGCATGCACTCCCACCTCCATTGCTGTATGGGACAGCAAGAAATGTTCAAATTCATGTA 1200
consensus_269#1 CGGCATGCACTCCCACCTCCATTGCTGTATGGGACAGCAAGAAATGTTCAAATTCATGTA 1200
************************************************************
consensus_269#0 ACACAACTGAGATAGTAAAGGCGCTTCACAACACTACCTTGTGCTCAAAGAGCCCTACAT 1260
consensus_269#1 ACACAACTGAGATAGTAAAGGCGCTTCACAACACTACCTTGTGCTCAAAGAGCCCTACAT 1260
************************************************************
consensus_269#0 TGCCACCTGAGGTGGAGGATGAGTAGAACCTTAGTGTTATTTTTTTTCCCGTCAACAGAT 1320
consensus_269#1 TGCCACCTGAGGTGGAGGATGAGTAGAACCTTAGTGTTATTTTTTTTCCCGTCAACAGAT 1320
************************************************************
consensus_269#0 GCCAG------------------------------------------------------- 1325
consensus_269#1 GCCAGGTATTGCCTGTCGTAACATCTGATTTCTAGTTAAATGTATTTCCATACCGTTGTA 1380
*****
consensus_269#0 --------------------------------------CTTCTTGTTGCTGAGAGTTCTC 1347
consensus_269#1 TTCATTGGTGAACTCATCTGAGAGCCATACTGTTGCAGCTTCTTGTTGCTGAGAGTTCTC 1440
**********************
consensus_269#0 CGAGAAGTGTACCATCGCGAGAATGATGTAGGATTTGTGTGCACACTCCCGATATTGGGA 1407
consensus_269#1 CGAGAAGTGTACCATCGCGAGAATGATGTAGGATTTGTGTGCACACTCCCGATATTGGGA 1500
************************************************************
consensus_269#0 TAAGCGAACAAGACAATATGTAGGTTCAGGCAAAATGTATACTCCCGACTGATAGAAGTG 1467
consensus_269#1 TAAGCGAACAAGACAATATGTAGGTTCAGGCAAAATGTATACTCCCGACTGATAGAAGTG 1560
************************************************************
consensus_269#0 GGAACATTTGTTGTCTTATGTGCCATAGCCGATTCTGGCCATCGATTCTTTCACTGGCTA 1527
consensus_269#1 GGAACATTTGTTGTCTTATGTGCCATAGCCGATTCTGGCCAT------------------ 1602
******************************************
consensus_269#0 TGTTGTTCATTGATGTGTATATAACCATATATATACCCCAGTCTGCATTGTTGATCATGA 1587
consensus_269#1 ------------------------------------------------------------
consensus_269#0 ACTTCATTTCATGATCATGGATAACTCCAGCTTATTTGGATTGATGTGTTCTCATAGAAC 1647
consensus_269#1 ------------------------------------------------------------
consensus_269#0 CAGAACCCAGCTTATGTCCGGTCGGAGTAATAATGACCAATTCATGTTGCTGATTACACT 1707
consensus_269#1 ------------------------------------------------------------
consensus_269#0 CCTGAGATATGATTATCTGAAGTAAGGACCAATTTATGTTGCTG 1751
consensus_269#1 --------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||