|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 736 fasta sequence
[AATCAGGACAGTTTTGGCCATCTCTAGTGAATCAGATTATTGGATACATCGTCTCAAAAAAAAAAGATTATTGGATACATGCCACAATAAATTTACTACTTTGGAAAATATAGCTTACTAGTTACAATTCTCTATTTATAACCATTCCATTGCAACACTCGTGAAATTAGATCTATGCCATGTTATACACTTGATACATGTTTTGAATCTTTTTTGTGTAATATTTTTTTTTGTACTCCTGCCAATCCTCTCTTAACCATAGACCCAAATCCCAGCAACCGAAGCTCCAAATTCCCCAAATCCCGGCAGTAGCGATGCGCGGCCTGGCGACGACGATGACCTTAGCGCCAACTTGCGTGCTATCCGAGCTGATCCAGCACCGGTGGCGGTGAGCTCAGCTCAAGCAGATCTAGTGGAGACGACGGTATCGGGTCTGGTGTTGAGCTACGACGTGCGGTCTGACAGAGGTGACATGGCCAACGGTGACAAGAAGCGTAGCTGCACGTAAGGTGCAGGGTATCACCGTATTATCTATCACCCGTCTGTCTCATCACATCGCTCTAGTAAGAGACAAACACAAGAAGGCAAATGGGTGTTGGCCGGACAGCCTATCTTCCAGAGCCCCTGAACTGATCAAGTGCCGCTCCACTGCTCTGACGAAGTCGTCCATGATTTCATCTGACGCTGCAAAATGCTGCACTATTATTGGCTCAAATACAGCTCTTACGCGCAAGGC]
[+] EMBL CB669699 [AATCAGGACAGTTTTGGCCATCTCTAGTGAATCAGATTATTGGATACATCGTCTCAAAAAAAAAAGATTATTGGATACATGCCACAATAAATTTACTACTTTGGAAAATATAGCTTACTAGTTACAATTCTCTATTTATAACCATTCCATTGCAACACTCGTGAAATTAGATCTATGCCATGTTATACACTTGATACATGTTTTGAATCTTTTTTGTGTAATATTTTTTTTTGTACTCCTGCCAATCCTCTCTTAACCATAGACCCAAATCCCAGCAACCGAAGCTCCAAATTCCCCAAATCCCGGCAGTAGCGATGCGCGGCCTGGCGACGACGATGACCTTAGCGCCAACTTGCGTGCTATCCGAGCTGATCCAGCACCGGTGGCGGTGAGCTCAGCTCAAGCAGATCTAGTGGAGACGACGGTATCGGGTCTGGTGTTGAGCTACGACGTGCGGTCTGACAGAGGTGACATGGCCAACGGTGACAAGAAGCGTAGCTGCACGTAAGGTGCAGGGTATCACCGTATTATCTATCACCCGTCTGTCTCATCACATCGCTCTAGTAAGAGACAAACACAAGAAGGCAAATGGGTGTTGGCCGGACAGCCTATCTTCCAGAGCCCCTGAACTGATCAAGTGCCGCTCCACTGCTCTGACGAAGTCGTCCATGATTTCATCTGACGCTGCAAAATGCTGCACTATTATTGGCTCAAATACAGCTCTTACGCGCAAGGC]
consensusID : consensus_2695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[TTTTTTTTTTTTTATTTTTTTAAATAAGATGAAGAGTCAAACCTTATATTAAAAAACTAAAAAATAGAGTCTTTGTGAGATGGAAAGAGTAAGAGTTAGTAGTACATTACATAGCAATCCTACCGTAAGGTGCAGGGTATCACCGTATTATCTATCACCCGTCTGTCTCATCACATCGCTCTAGTAAGAGACAAACACAAGAAGGCAAATGGGTGTTGGCCGGACAGCCTAGCTTTCAGAGCCCCTGAACTGATCAAGTGCCNGCTCACTGCTCTGACGAAGTCGTCCATGATTTCATCTGACGCTGCAAAATGCTGCACTATTATTGGCTCAAATACAGCTCTTACGCGCAGGGCTACCATCTTTAAATCGAGCAAGCTTTGCCCGTGCCGCATACGGAATGGGATAATATTTTGTGACCCCAAAGGAACCCTCCCCTCTAGAGGGGGGAACCTCCTGGCCCAAGGGCCACAAGGAATGGAAAAGGGCAAGTTTTTTTTTGGGAAACCCCCTTAAGGGCTGGCCTTAAGGCCCCCCCGGGGCCCAGGGGGAAATTCTCAGGCGGTGGTGCGAGGGTTGACAACAGGAAAACAATTTGGCCCCGGGAAAACTCTGGCCCCAGCGTAAAAGGGAGAAACCTTTTAAAGG]
[+] EMBL CA763396 [TTTTTTTTTTTTTATTTTTTTAAATAAGATGAAGAGTCAAACCTTATATTAAAAAACTAAAAAATAGAGTCTTTGTGAGATGGAAAGAGTAAGAGTTAGTAGTACATTACATAGCAATCCTACCGTAAGGTGCAGGGTATCACCGTATTATCTATCACCCGTCTGTCTCATCACATCGCTCTAGTAAGAGACAAACACAAGAAGGCAAATGGGTGTTGGCCGGACAGCCTAGCTTTCAGAGCCCCTGAACTGATCAAGTGCCNGCTCACTGCTCTGACGAAGTCGTCCATGATTTCATCTGACGCTGCAAAATGCTGCACTATTATTGGCTCAAATACAGCTCTTACGCGCAGGGCTACCATCTTTAAATCGAGCAAGCTTTGCCCGTGCCGCATACGGAATGGGATAATATTTTGTGACCCCAAAGGAACCCTCCCCTCTAGAGGGGGGAACCTCCTGGCCCAAGGGCCACAAGGAATGGAAAAGGGCAAGTTTTTTTTTGGGAAACCCCCTTAAGGGCTGGCCTTAAGGCCCCCCCGGGGCCCAGGGGGAAATTCTCAGGCGGTGGTGCGAGGGTTGACAACAGGAAAACAATTTGGCCCCGGGAAAACTCTGGCCCCAGCGTAAAAGGGAGAAACCTTTTAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2695#0 AATCAGGACAGTTTTGGCCATCTCTAGTGAATCAGATTATTGGATACATCGTCTCAAAAA 60
consensus_2695#1 --------------------TTTTTTTTTTTTTATTTTTTTAAATAAGATG----AAGAG 36
* * * * * * ** ** *** * ** *
consensus_2695#0 AAAAAGATTAT-TGGATACATGCCACAATAAATTTACTACTTTGGAAAATATAGCTTACT 119
consensus_2695#1 TCAAACCTTATATTAAAAAACTAAAAAATAGAGTCTTTG---TGAGATGGAAAGAGTAAG 93
*** **** * * * * * **** * * * ** * * ** **
consensus_2695#0 AGTTACAATTCTCTATTTATAACCATTCCATTGCAACACTCGTGAAATTAGATCTATGCC 179
consensus_2695#1 AGTTAGTAGTACAT-TACATAGCAATCCTACCGTAAGGTGCAGGGTATCAC-CGTATTAT 151
***** * * * * *** * ** * * * ** * * ** * ***
consensus_2695#0 ATGTTATACACTTGATACATGTTTTGAATCTTTTTTGTGTAATATTTTTTTTTGTACTCC 239
consensus_2695#1 CTATCACCCGTCTGTCTCAT----CACATCGCTCTAGTAAGAGACAAACACAAGAA---- 203
* * * * ** *** *** * * ** * * * *
consensus_2695#0 TGCCAATCCTCTCTTAACCATAGACCCAAATCCCAGCAACCGAAGCTCCAAATTCCCCAA 299
consensus_2695#1 -GGCAAATGGGTGTTGGCCGGA--------------CAGCCTAGCTTTCAGAGCCCCTGA 248
* *** * ** ** * ** ** * * ** * *** *
consensus_2695#0 ATCCCGGCAGTAGCGATGCGCGGCCTGGCGACGACGATGACCTTAGCGCCAACTTGCGTG 359
consensus_2695#1 ACTGATCAAGTGCCNGCTCACTGCTC--TGACGAAGTCGTCCATGATTTCATCTGACGC- 305
* *** * * * ** ***** * * ** * ** ** **
consensus_2695#0 CTATCCGAGCTGATCCAGCACCGGTGGCGGTGAGCTCAGCTCAAGCAGATCTAGTGGAGA 419
consensus_2695#1 ---TGCAAAATGCTGCACTATTATTGGCT-CAAATACAGCTCTTACGC-----GCAGGGC 356
* * * ** * ** * **** * ****** * * * *
consensus_2695#0 CGACGGTATCGGGTCTGGTGTTGAGCTACGAC-GTGCGGTCTGACAGAGGTGACATGGCC 478
consensus_2695#1 TACCATCTTTAAATCGAGCA---AGCTTTGCCCGTGCCGCAT-ACGGAA-TGGGATAATA 411
* * ** * **** * * **** * * ** ** ** **
consensus_2695#0 AACGGTGACAAGAAGCGTAGCTGCACGTAAGGTGCAGGGTATCACCGTATTATCTATCAC 538
consensus_2695#1 TTTTGTGACCCCAAAGGAACCCTCCCCTCTAGAGGGGGGAACCTCC----------TGGC 461
***** ** * * * * * * * * *** * * ** * *
consensus_2695#0 CCGTCTGTCTCATCACATCGCTCTAGTAAGAGACAAACACAAGAAGGCAAAT-GGGTGTT 597
consensus_2695#1 CCAAGGGCCACAAGGAATGGAAAAGGGCAAGTTTTTTTTTGGGAAACCCCCTTAAGGGCT 521
** * * ** ** * * * *** * * * * *
consensus_2695#0 GGCCGGACAGCCTATCTTCCAGAGCCCCTG---AACTGATCAAGTGCCGCTCCACTGCTC 654
consensus_2695#1 GGCCTTAAGGCC---CCCCCGGGGCCCAGGGGGAAATTCTCAGGCGGTGGTGCGAGGGT- 577
**** * *** * ** * **** * ** * *** * * * * * * *
consensus_2695#0 TGACGAAGTCGTCCATGATTTCATCTGACGCTGCAAAATGCTGCACTATTATTGGCTCAA 714
consensus_2695#1 TGAC-AACAGGAAAACAATTTGGCCC----CGGGAAAACTCTGGCCCCAGCGTAAAAGGG 632
**** ** * * **** * * * **** *** * *
consensus_2695#0 ATACAGCTCTTACGCGCAAGGC 736
consensus_2695#1 AGAAACCTTTTAAAGG------ 648
* * * ** *** *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||