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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1706 fasta sequence
[TTCTTGAACTGCCCTCAAGAAAGCAGGGGAAAGGAAAGGACTCCCCTTTCCACTGGGAGAGAGAAAAGGAGAGAGAGACCTGGAGAAGGGGGGAAAGGGAGGAGGAAGAAGAGGGGAGAGAGGCCATGGTGCGGAAGAATGGGTGGCAGCTCCCAGCACACACCTTCCAGATTATTGCAATTACCGTTTTCTTCCTTCTGGTGGTTGCCTTTTATGCCTTCTTTGCACCATTCCTGGGAAAGCAAGTCCTTGAATATATCGCATTCGGCATCTATACTCCTGTGGCATTTGTTGTCTTCATCCTTTATATCCGGTGCACTAGCATAAATCCTGCAGATCCCGGGATCATGTCAAAGTTTCAAAATGGCTTCCGTAATGCACCAACAAGCGGCACCGGCTTACAGGACACAAATTTGCCAGGAAGGGGTGATGTTGCTACTGGAACGAATTCCCCAACATCTACTTTTAAGAGCTCTCTAGATGGACGTTCTAACCATGCTGGTTTAGCTGCTGGAGATGGAAATAATTTGAGCTCACAACCACCAAGGAGTTCAAGTTGCTCCTTAGTCGGAGGACTTATTTGTGCTCTGTTTGTTGAGGAGGATTGCAGGACGCTTGTTGATTCAGAGCATCAAGCTGATGGAGAAGATGCCTTGTTTTGCACATTATGTAATGCTGAGGTTCGCAAATTCAGTAAACATTGCAGAAGTTGTGATAAATGTGTGGATGGTTTTGATCATCACTGTCGGTGGCTAAATAATTGCGTTGGGCGCAAGAACTATTTCACATTTCTTGCTCTGATGATTACCAGCCTCCTCTGGCTTGCCATTGAAATCGGGGTCGGCATTGCTGTTCTTGTTGTATGCTTCGTCAACAAGAATTCAGAAAGTATTATTCAAGACAAGCTTGCAAATGGTTTAACTCGTCCACCCTTTGCAACTATAGTAGCCATATTTACTCTTCTTTCTATAATCGCTTGTATACCCCTAGGTGAACTCTTCTTCTTCCACATGATACTGATCAGAAAGGGGATCACAACTTACGAATATGTTGTCGCAATGAGAGCTATGAGTGAAGCACCTCAAGAGGAGGAAGAAGAGGATGGGGTGAACATTGTTTATTCCCCAACAAATTCAGCAACTACTGGATTCAGCGGTGGAAGCTCACTTGGTCTTCCCTACAAGGGTTCATGGTGCACACCTCCAAGGATTTTCGTTGATCAGGATGAAGTGATCCCACACCTGGAGGCTGGGATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCCAAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATGAAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCACCGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGCGTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCGCAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCGGTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGGCCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG]
[+] EMBL AK099715 [TTCTTGAACTGCCCTCAAGAAAGCAGGGGAAAGGAAAGGACTCCCCTTTCCACTGGGAGAGAGAAAAGGAGAGAGAGACCTGGAGAAGGGGGGAAAGGGAGGAGGAAGAAGAGGGGAGAGAGGCCATGGTGCGGAAGAATGGGTGGCAGCTCCCAGCACACACCTTCCAGATTATTGCAATTACCGTTTTCTTCCTTCTGGTGGTTGCCTTTTATGCCTTCTTTGCACCATTCCTGGGAAAGCAAGTCCTTGAATATATCGCATTCGGCATCTATACTCCTGTGGCATTTGTTGTCTTCATCCTTTATATCCGGTGCACTAGCATAAATCCTGCAGATCCCGGGATCATGTCAAAGTTTCAAAATGGCTTCCGTAATGCACCAACAAGCGGCACCGGCTTACAGGACACAAATTTGCCAGGAAGGGGTGATGTTGCTACTGGAACGAATTCCCCAACATCTACTTTTAAGAGCTCTCTAGATGGACGTTCTAACCATGCTGGTTTAGCTGCTGGAGATGGAAATAATTTGAGCTCACAACCACCAAGGAGTTCAAGTTGCTCCTTAGTCGGAGGACTTATTTGTGCTCTGTTTGTTGAGGAGGATTGCAGGACGCTTGTTGATTCAGAGCATCAAGCTGATGGAGAAGATGCCTTGTTTTGCACATTATGTAATGCTGAGGTTCGCAAATTCAGTAAACATTGCAGAAGTTGTGATAAATGTGTGGATGGTTTTGATCATCACTGTCGGTGGCTAAATAATTGCGTTGGGCGCAAGAACTATTTCACATTTCTTGCTCTGATGATTACCAGCCTCCTCTGGCTTGCCATTGAAATCGGGGTCGGCATTGCTGTTCTTGTTGTATGCTTCGTCAACAAGAATTCAGAAAGTATTATTCAAGACAAGCTTGCAAATGGTTTAACTCGTCCACCCTTTGCAACTATAGTAGCCATATTTACTCTTCTTTCTATAATCGCTTGTATACCCCTAGGTGAACTCTTCTTCTTCCACATGATACTGATCAGAAAGGGGATCACAACTTACGAATATGTTGTCGCAATGAGAGCTATGAGTGAAGCACCTCAAGAGGAGGAAGAAGAGGATGGGGTGAACATTGTTTATTCCCCAACAAATTCAGCAACTACTGGATTCAGCGGTGGAAGCTCACTTGGTCTTCCCTACAAGGGTTCATGGTGCACACCTCCAAGGATTTTCGTTGATCAGGATGAAGTGATCCCACACCTGGAGGCTGGGATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCCAAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATGAAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCACCGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGCGTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCGCAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCGGTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGGCCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG]
consensusID : consensus_2728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 937 fasta sequence
[TGCAAACGATGACCCGTCTCTTCTGAGACAATCTCTCCTGATAAATAAAGAATCAGATATTGTATCATCTGAATGAATATCAGTATGAATCTTCAAGCTGCAAATAGCATTACAAAGAACATATTTATCTGAATTCTTGCAAACAACATTGCTAAATAATCTCTCCGTTTTAGGTTATAAGACGTTTTGACTTTGCTAAAAGTCAAACTATTTCAAGTTTGACTAAGTTTATAGATGAATACAGTAATATTTATAATACTAAATTAGTTTCATCAAATCAATAATTGAATACATTTCCATAATAAATTAGTCTTGGGTTGAAAATGTTACTAATTTTTTTACAAACTTTATCAAACTTAAAACAGTTTGACTTTGATTAAAGCAAAGACGTCTTCTAAAATGAAACGGAGGGAGTAGCGCTGTACTATTTCTCTTCTGAATGATTGCAATGCAGGATGAAGTGATCCCACACCTGGAGGCTGGGATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCCAAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATGAAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCACCGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGCGTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCGCAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCGGTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGGCCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG]
[+] EMBL AK106793 [TGCAAACGATGACCCGTCTCTTCTGAGACAATCTCTCCTGATAAATAAAGAATCAGATATTGTATCATCTGAATGAATATCAGTATGAATCTTCAAGCTGCAAATAGCATTACAAAGAACATATTTATCTGAATTCTTGCAAACAACATTGCTAAATAATCTCTCCGTTTTAGGTTATAAGACGTTTTGACTTTGCTAAAAGTCAAACTATTTCAAGTTTGACTAAGTTTATAGATGAATACAGTAATATTTATAATACTAAATTAGTTTCATCAAATCAATAATTGAATACATTTCCATAATAAATTAGTCTTGGGTTGAAAATGTTACTAATTTTTTTACAAACTTTATCAAACTTAAAACAGTTTGACTTTGATTAAAGCAAAGACGTCTTCTAAAATGAAACGGAGGGAGTAGCGCTGTACTATTTCTCTTCTGAATGATTGCAATGCAGGATGAAGTGATCCCACACCTGGAGGCTGGGATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCCAAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATGAAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCACCGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGCGTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCGCAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCGGTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGGCCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2728#0 TTCTTGAACTGCCCTCAAGAAAGCAGGGGAAAGGAAAGGACTCCCCTTTCCACTGGGAGA 60
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 GAGAAAAGGAGAGAGAGACCTGGAGAAGGGGGGAAAGGGAGGAGGAAGAAGAGGGGAGAG 120
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 AGGCCATGGTGCGGAAGAATGGGTGGCAGCTCCCAGCACACACCTTCCAGATTATTGCAA 180
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 TTACCGTTTTCTTCCTTCTGGTGGTTGCCTTTTATGCCTTCTTTGCACCATTCCTGGGAA 240
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 AGCAAGTCCTTGAATATATCGCATTCGGCATCTATACTCCTGTGGCATTTGTTGTCTTCA 300
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 TCCTTTATATCCGGTGCACTAGCATAAATCCTGCAGATCCCGGGATCATGTCAAAGTTTC 360
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 AAAATGGCTTCCGTAATGCACCAACAAGCGGCACCGGCTTACAGGACACAAATTTGCCAG 420
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 GAAGGGGTGATGTTGCTACTGGAACGAATTCCCCAACATCTACTTTTAAGAGCTCTCTAG 480
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 ATGGACGTTCTAACCATGCTGGTTTAGCTGCTGGAGATGGAAATAATTTGAGCTCACAAC 540
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 CACCAAGGAGTTCAAGTTGCTCCTTAGTCGGAGGACTTATTTGTGCTCTGTTTGTTGAGG 600
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 AGGATTGCAGGACGCTTGTTGATTCAGAGCATCAAGCTGATGGAGAAGATGCCTTGTTTT 660
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 GCACATTATGTAATGCTGAGGTTCGCAAATTCAGTAAACATTGCAGAAGTTGTGATAAAT 720
consensus_2728#1 ------------------------------------------------------------
consensus_2728#0 GTGTGGATGGTTTTGATCATCACTGTCGGTGGCTAAATAATTGCGTTGGGCGCAAGAACT 780
consensus_2728#1 -------TGCAAACGATGAC--CCGTCTCTTCTGAGACAATCTCTCCTGATAAATAAAGA 51
** *** * * *** * * * *** * * * **
consensus_2728#0 ATTTCACATTTCTTGCTCTGA-TGATTACCAGCCTCCTCTGGCTTGCCATTGAAATCGGG 839
consensus_2728#1 ATCAGATATTGTATCATCTGAATGAATATCAGTATGA---ATCTTCAAGCTGCAAATAGC 108
** * *** * ***** *** ** *** * *** ** ** *
consensus_2728#0 GTCGGCATTGCTGTTCTTGTTGTATGCTTCGTCAACAAGAATTCAGAAAGTATTATTCAA 899
consensus_2728#1 ATTACAAAGAACATATTTATCTGAATTCTTGCAAACAACATTGCTAAATAATCTCTCCGT 168
* * * ** * * * * ***** * * * ** * * *
consensus_2728#0 GACAAGCTTGCAAATGGTTTAACTCGTCCACCCTTTGCAACTATAGTAGCCATATTTACT 959
consensus_2728#1 TTTAGGTTATAAGACGTTTTGAC----------TTTGC-----TAAAAGTCAAACTATTT 213
* * * * * * *** ** ***** ** ** ** * * *
consensus_2728#0 CTTCTTTCTATAATCGCTTGTATACCCCTAGGTGAACTCTTCTTCTTCCACATGATACTG 1019
consensus_2728#1 CAAGTTTGACTAA--GTTTATAGATGAATACAGTAATATTTATAATACTAAATTAGTTTC 271
* *** *** * ** ** * ** ** ** * * * * ** * *
consensus_2728#0 ATCAGAAAGGGGATCACAACTTACGAATATGTTGTCGCAATGAG--AGCTATGAGTGAAG 1077
consensus_2728#1 ATCAAA-------TCAATAATT--GAATACATTTCCATAATAAATTAGTCTTGGGTTGAA 322
**** * *** * ** ***** ** * *** * ** ** ** *
consensus_2728#0 CACCTCAAGAGGAGGAAGAAGAGGATGGGGTGAACATTGTTTATTCCCCAACAAATTCAG 1137
consensus_2728#1 AATGTTACTA-----------ATTTTTTTACAAACTTTATCAAACTTAAAACAGTTT--- 368
* * * * * * *** ** * * **** **
consensus_2728#0 CAACTACTGGATTCAGCGGTGGAAGCTCACTTGGTCTTCCCTACAAGGGTTCATGGTGCA 1197
consensus_2728#1 -GACT--TTGATTAAAGCAAAGACG-TCTTCTAAAATGAAACGGAGGGAGTAGCGCTGTA 424
*** * **** * ** * ** * * * ** * * ** *
consensus_2728#0 CACCTCCAA----GGATTTTCGTTGATCAGGATGAAGTGATCCCACACCTGGAGGCTGGG 1253
consensus_2728#1 CTATTTCTCTTCTGAATGATTGCAATGCAGGATGAAGTGATCCCACACCTGGAGGCTGGG 484
* * * * ** * * *********************************
consensus_2728#0 ATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCC 1313
consensus_2728#1 ATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCC 544
************************************************************
consensus_2728#0 AAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATG 1373
consensus_2728#1 AAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATG 604
************************************************************
consensus_2728#0 AAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCAC 1433
consensus_2728#1 AAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCAC 664
************************************************************
consensus_2728#0 CGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGC 1493
consensus_2728#1 CGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGC 724
************************************************************
consensus_2728#0 GTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCG 1553
consensus_2728#1 GTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCG 784
************************************************************
consensus_2728#0 CAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCG 1613
consensus_2728#1 CAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCG 844
************************************************************
consensus_2728#0 GTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGG 1673
consensus_2728#1 GTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGG 904
************************************************************
consensus_2728#0 CCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG 1706
consensus_2728#1 CCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG 937
*********************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||