cluster # 2729

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Oryza sativa
cluster # 2729 cluster # 2729 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2729#0 length = 807 sequences # 1

consensus_2729#1 length = 708 sequences # 1

consensusID : consensus_2729#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 807
fasta sequence

                              [CCTCTGCATCGCCGCGAGTGCGCGTCAGGCGCCTCCCCGCCGCATCGCCGTGCCTCCTCCGCATCCCTCCCCTACGCGCATCCTCCACCCTGGTCCCTCGCCTCCGCCTGCGAGGAGGAACGCTTCGCCGGGCGCCTCTCCTCGCCTTTTGCAGAGTATTTTAAAGACAAATGGTGTAGCTCGCCAGGGACTGCATTTGCGTCACTCGTCCGCGCCGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCATCGACGCACTGCCACCGCATCCACCTCGAGCGTCAACGCCGCCAAGAGGTAAAATCCCCTCGACAAGCTGCTTCAGCGACCGGTATCCTCGGTCTCCGCCTCAACCGCCGCCGCCGCCACCACCGGATCCCTGCATCGTCGATTCTACTGCACACCTGCGAGCATAGCAGTGGATGTGAGGGTGTCGTGGTCCTGCTACAACCCTAACAAGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAACATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATGTCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTTATGCGCATCACGCTGACAAGTAACTTGAGATGT]

[+] EMBL AK071232             [CCTCTGCATCGCCGCGAGTGCGCGTCAGGCGCCTCCCCGCCGCATCGCCGTGCCTCCTCCGCATCCCTCCCCTACGCGCATCCTCCACCCTGGTCCCTCGCCTCCGCCTGCGAGGAGGAACGCTTCGCCGGGCGCCTCTCCTCGCCTTTTGCAGAGTATTTTAAAGACAAATGGTGTAGCTCGCCAGGGACTGCATTTGCGTCACTCGTCCGCGCCGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCATCGACGCACTGCCACCGCATCCACCTCGAGCGTCAACGCCGCCAAGAGGTAAAATCCCCTCGACAAGCTGCTTCAGCGACCGGTATCCTCGGTCTCCGCCTCAACCGCCGCCGCCGCCACCACCGGATCCCTGCATCGTCGATTCTACTGCACACCTGCGAGCATAGCAGTGGATGTGAGGGTGTCGTGGTCCTGCTACAACCCTAACAAGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAACATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATGTCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTTATGCGCATCACGCTGACAAGTAACTTGAGATGT]




>consensus_2729#0
CCTCTGCATCGCCGCGAGTGCGCGTCAGGCGCCTCCCCGCCGCATCGCCGTGCCTCCTCC
GCATCCCTCCCCTACGCGCATCCTCCACCCTGGTCCCTCGCCTCCGCCTGCGAGGAGGAA
CGCTTCGCCGGGCGCCTCTCCTCGCCTTTTGCAGAGTATTTTAAAGACAAATGGTGTAGC
TCGCCAGGGACTGCATTTGCGTCACTCGTCCGCGCCGCCATAACTGCATCGACAAGCCTC
GCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACTG
CATCGACAAGCCTCGCCGATCTGCATCGACGCACTGCCACCGCATCCACCTCGAGCGTCA
ACGCCGCCAAGAGGTAAAATCCCCTCGACAAGCTGCTTCAGCGACCGGTATCCTCGGTCT
CCGCCTCAACCGCCGCCGCCGCCACCACCGGATCCCTGCATCGTCGATTCTACTGCACAC
CTGCGAGCATAGCAGTGGATGTGAGGGTGTCGTGGTCCTGCTACAACCCTAACAAGTGAA
ACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGAGACA
TTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAACATAATC
ATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATGTCATTG
GTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTTATGCGC
ATCACGCTGACAAGTAACTTGAGATGT

consensusID : consensus_2729#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence

                              [AATATATGTAATAATTAAACCAGTATGTCAAGCTTATTATTATCTTCATAGATGGTTTTTAGTATGCTCTTGCCTTGCTAACGTAGGTCGACTTTCTTGTACTGATGGGTTCCTATTGGTTATTGACTATTAAAATAAATTCTAACATTATAAACTGATTTGTATAATATACGTCACTGGATCTGGTTATTCCTATATGCAAATGCACAACTTCAACTAGAAGCAGCTGTGTTTACGTTAATGGTACTGACTGATGGTTATATATGAACTTGTCTGAAGTTATTTATGAACCGTTCTGAACTTTGCATGCTTCCTCAGATGTCTGACTTCTTTGTAATGCACTTTTATTTTTCTGTAATAATGCTTGGGATTACGACTCAGATAGAGTGCTAACTGTTTTCCACATGTGCAGAACAAGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAACATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATGTCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTTATGCGCATCACGCTGACAAGTAACTTGAGATGTTTATATTAGGATGGGAGAC]

[-] EMBL CB683283             [AATATATGTAATAATTAAACCAGTATGTCAAGCTTATTATTATCTTCATAGATGGTTTTTAGTATGCTCTTGCCTTGCTAACGTAGGTCGACTTTCTTGTACTGATGGGTTCCTATTGGTTATTGACTATTAAAATAAATTCTAACATTATAAACTGATTTGTATAATATACGTCACTGGATCTGGTTATTCCTATATGCAAATGCACAACTTCAACTAGAAGCAGCTGTGTTTACGTTAATGGTACTGACTGATGGTTATATATGAACTTGTCTGAAGTTATTTATGAACCGTTCTGAACTTTGCATGCTTCCTCAGATGTCTGACTTCTTTGTAATGCACTTTTATTTTTCTGTAATAATGCTTGGGATTACGACTCAGATAGAGTGCTAACTGTTTTCCACATGTGCAGAACAAGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAACATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATGTCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTTATGCGCATCACGCTGACAAGTAACTTGAGATGTTTATATTAGGATGGGAGAC]




>consensus_2729#1
AATATATGTAATAATTAAACCAGTATGTCAAGCTTATTATTATCTTCATAGATGGTTTTT
AGTATGCTCTTGCCTTGCTAACGTAGGTCGACTTTCTTGTACTGATGGGTTCCTATTGGT
TATTGACTATTAAAATAAATTCTAACATTATAAACTGATTTGTATAATATACGTCACTGG
ATCTGGTTATTCCTATATGCAAATGCACAACTTCAACTAGAAGCAGCTGTGTTTACGTTA
ATGGTACTGACTGATGGTTATATATGAACTTGTCTGAAGTTATTTATGAACCGTTCTGAA
CTTTGCATGCTTCCTCAGATGTCTGACTTCTTTGTAATGCACTTTTATTTTTCTGTAATA
ATGCTTGGGATTACGACTCAGATAGAGTGCTAACTGTTTTCCACATGTGCAGAACAAGTG
AAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGAGA
CATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAACATAA
TCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATGTCAT
TGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTTATGC
GCATCACGCTGACAAGTAACTTGAGATGTTTATATTAGGATGGGAGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2729#0      CCTCTGCATCGCCGCGAGTGCGCGTCAGGCGCCTCCCCGCCGCATCGCCGTGCCTCCTCC 60
consensus_2729#1      ------------------------------------------------------------
                                                                                  

consensus_2729#0      GCATCCCTCCCCTACGCGCATCCTCCACCCTGGTCCCTCGCCTCCGCCTGCGAGGAGGAA 120
consensus_2729#1      ------------------------------------------AATATATGTAATAATTAA 18
                                                                      **  *  *  **

consensus_2729#0      CGCTTCGCCGGGCGCCTCTCCTCGCCTTTTGCAGAGTATTTTAAAGACAAA-TGGTGTAG 179
consensus_2729#1      ACCAGTATGTCAAGCTTATTATTATCTTC-ATAGATGGTTTTTAGTATGCTCTTGCCTTG 77
                        *          ** * *  *   ***    ***   **** *  *     * *  * *

consensus_2729#0      CTCGCCAGGGACTGCATTTGCGTCACTCGTCCGCGCCGCCATAACTGCATCGACAAGCCT 239
consensus_2729#1      CTAACGTAGGTCGACTTTCTTGT-ACTGAT--GGGTTCCTATTGGT-TATTGACTATTAA 133
                      **  *   ** *  * **   ** ***  *  * *   * **   *  ** *** *    

consensus_2729#0      CGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACT 299
consensus_2729#1      AATAAATTC---------TAACATTATAAACTGATTTGTATAATATACGTCACTGGATCT 184
                           **           ****   **  **     *     ** * ** * *   * **

consensus_2729#0      G--CATCGACAAGCCTCGCCGATCTGCATCGACGCACTGCCACCGCATCCACCTCGA--G 355
consensus_2729#1      GGTTATTCCTATATGCAAATGCACAACTTCAACTAGAAGCAGCTGTGTTTACGTTAATGG 244
                      *   **    *         *  *  * ** **     **  * *  *  ** *  *  *

consensus_2729#0      CGTCAAC-GCCGCCAAGAGGTAAAATCCCCTCGACAAGCTGCTTCAGCGACCGGTATCCT 414
consensus_2729#1      TACTGACTGATGGTTATATATGAACTTGTCTGAAGTTATTTATGAACCGTTCTG-AACTT 303
                           ** *  *   * *  * ** *   **  *     *  *  * **  * * * * *

consensus_2729#0      CGGTCTCCGCCTCAACCGCCGCCGCCGCCACCACCGGATCCCTGCATCGTCGATTCTACT 474
consensus_2729#1      TGCATGCTTCCTCAGATGTC--TGACTTCTTTGTAATGCACTTTTATTTTT--CTGTAAT 359
                       *    *  *****   * *   * *  *           * *  **  *    * ** *

consensus_2729#0      GCACACCTGCGAGCATAGCAGTGGATGTGAGGGTGTCGTGGTCCTGCTACAACCCTAACA 534
consensus_2729#1      A-ATGCTTGGGATTACGACT-CAGATA-GAGTGCTAACTGTTTTCCACATGTGCAGAACA 416
                        *  * ** **  *   *    ***  *** *     ** *      *    *  ****

consensus_2729#0      AGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGT 594
consensus_2729#1      AGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGT 476
                      ************************************************************

consensus_2729#0      GAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAAC 654
consensus_2729#1      GAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAAC 536
                      ************************************************************

consensus_2729#0      ATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATG 714
consensus_2729#1      ATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATG 596
                      ************************************************************

consensus_2729#0      TCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTT 774
consensus_2729#1      TCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTT 656
                      ************************************************************

consensus_2729#0      ATGCGCATCACGCTGACAAGTAACTTGAGATGT------------------- 807
consensus_2729#1      ATGCGCATCACGCTGACAAGTAACTTGAGATGTTTATATTAGGATGGGAGAC 708
                      *********************************