These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2729#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence [CCTCTGCATCGCCGCGAGTGCGCGTCAGGCGCCTCCCCGCCGCATCGCCGTGCCTCCTCCGCATCCCTCCCCTACGCGCATCCTCCACCCTGGTCCCTCGCCTCCGCCTGCGAGGAGGAACGCTTCGCCGGGCGCCTCTCCTCGCCTTTTGCAGAGTATTTTAAAGACAAATGGTGTAGCTCGCCAGGGACTGCATTTGCGTCACTCGTCCGCGCCGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCATCGACGCACTGCCACCGCATCCACCTCGAGCGTCAACGCCGCCAAGAGGTAAAATCCCCTCGACAAGCTGCTTCAGCGACCGGTATCCTCGGTCTCCGCCTCAACCGCCGCCGCCGCCACCACCGGATCCCTGCATCGTCGATTCTACTGCACACCTGCGAGCATAGCAGTGGATGTGAGGGTGTCGTGGTCCTGCTACAACCCTAACAAGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAACATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATGTCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTTATGCGCATCACGCTGACAAGTAACTTGAGATGT] [+] EMBL AK071232 [CCTCTGCATCGCCGCGAGTGCGCGTCAGGCGCCTCCCCGCCGCATCGCCGTGCCTCCTCCGCATCCCTCCCCTACGCGCATCCTCCACCCTGGTCCCTCGCCTCCGCCTGCGAGGAGGAACGCTTCGCCGGGCGCCTCTCCTCGCCTTTTGCAGAGTATTTTAAAGACAAATGGTGTAGCTCGCCAGGGACTGCATTTGCGTCACTCGTCCGCGCCGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCATCGACGCACTGCCACCGCATCCACCTCGAGCGTCAACGCCGCCAAGAGGTAAAATCCCCTCGACAAGCTGCTTCAGCGACCGGTATCCTCGGTCTCCGCCTCAACCGCCGCCGCCGCCACCACCGGATCCCTGCATCGTCGATTCTACTGCACACCTGCGAGCATAGCAGTGGATGTGAGGGTGTCGTGGTCCTGCTACAACCCTAACAAGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAACATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATGTCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTTATGCGCATCACGCTGACAAGTAACTTGAGATGT] consensusID : consensus_2729#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence [AATATATGTAATAATTAAACCAGTATGTCAAGCTTATTATTATCTTCATAGATGGTTTTTAGTATGCTCTTGCCTTGCTAACGTAGGTCGACTTTCTTGTACTGATGGGTTCCTATTGGTTATTGACTATTAAAATAAATTCTAACATTATAAACTGATTTGTATAATATACGTCACTGGATCTGGTTATTCCTATATGCAAATGCACAACTTCAACTAGAAGCAGCTGTGTTTACGTTAATGGTACTGACTGATGGTTATATATGAACTTGTCTGAAGTTATTTATGAACCGTTCTGAACTTTGCATGCTTCCTCAGATGTCTGACTTCTTTGTAATGCACTTTTATTTTTCTGTAATAATGCTTGGGATTACGACTCAGATAGAGTGCTAACTGTTTTCCACATGTGCAGAACAAGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAACATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATGTCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTTATGCGCATCACGCTGACAAGTAACTTGAGATGTTTATATTAGGATGGGAGAC] [-] EMBL CB683283 [AATATATGTAATAATTAAACCAGTATGTCAAGCTTATTATTATCTTCATAGATGGTTTTTAGTATGCTCTTGCCTTGCTAACGTAGGTCGACTTTCTTGTACTGATGGGTTCCTATTGGTTATTGACTATTAAAATAAATTCTAACATTATAAACTGATTTGTATAATATACGTCACTGGATCTGGTTATTCCTATATGCAAATGCACAACTTCAACTAGAAGCAGCTGTGTTTACGTTAATGGTACTGACTGATGGTTATATATGAACTTGTCTGAAGTTATTTATGAACCGTTCTGAACTTTGCATGCTTCCTCAGATGTCTGACTTCTTTGTAATGCACTTTTATTTTTCTGTAATAATGCTTGGGATTACGACTCAGATAGAGTGCTAACTGTTTTCCACATGTGCAGAACAAGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAACATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATGTCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTTATGCGCATCACGCTGACAAGTAACTTGAGATGTTTATATTAGGATGGGAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2729#0 CCTCTGCATCGCCGCGAGTGCGCGTCAGGCGCCTCCCCGCCGCATCGCCGTGCCTCCTCC 60 consensus_2729#1 ------------------------------------------------------------ consensus_2729#0 GCATCCCTCCCCTACGCGCATCCTCCACCCTGGTCCCTCGCCTCCGCCTGCGAGGAGGAA 120 consensus_2729#1 ------------------------------------------AATATATGTAATAATTAA 18 ** * * ** consensus_2729#0 CGCTTCGCCGGGCGCCTCTCCTCGCCTTTTGCAGAGTATTTTAAAGACAAA-TGGTGTAG 179 consensus_2729#1 ACCAGTATGTCAAGCTTATTATTATCTTC-ATAGATGGTTTTTAGTATGCTCTTGCCTTG 77 * ** * * * *** *** **** * * * * * * consensus_2729#0 CTCGCCAGGGACTGCATTTGCGTCACTCGTCCGCGCCGCCATAACTGCATCGACAAGCCT 239 consensus_2729#1 CTAACGTAGGTCGACTTTCTTGT-ACTGAT--GGGTTCCTATTGGT-TATTGACTATTAA 133 ** * ** * * ** ** *** * * * * ** * ** *** * consensus_2729#0 CGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACT 299 consensus_2729#1 AATAAATTC---------TAACATTATAAACTGATTTGTATAATATACGTCACTGGATCT 184 ** **** ** ** * ** * ** * * * ** consensus_2729#0 G--CATCGACAAGCCTCGCCGATCTGCATCGACGCACTGCCACCGCATCCACCTCGA--G 355 consensus_2729#1 GGTTATTCCTATATGCAAATGCACAACTTCAACTAGAAGCAGCTGTGTTTACGTTAATGG 244 * ** * * * * ** ** ** * * * ** * * * consensus_2729#0 CGTCAAC-GCCGCCAAGAGGTAAAATCCCCTCGACAAGCTGCTTCAGCGACCGGTATCCT 414 consensus_2729#1 TACTGACTGATGGTTATATATGAACTTGTCTGAAGTTATTTATGAACCGTTCTG-AACTT 303 ** * * * * * ** * ** * * * * ** * * * * * consensus_2729#0 CGGTCTCCGCCTCAACCGCCGCCGCCGCCACCACCGGATCCCTGCATCGTCGATTCTACT 474 consensus_2729#1 TGCATGCTTCCTCAGATGTC--TGACTTCTTTGTAATGCACTTTTATTTTT--CTGTAAT 359 * * ***** * * * * * * * ** * * ** * consensus_2729#0 GCACACCTGCGAGCATAGCAGTGGATGTGAGGGTGTCGTGGTCCTGCTACAACCCTAACA 534 consensus_2729#1 A-ATGCTTGGGATTACGACT-CAGATA-GAGTGCTAACTGTTTTCCACATGTGCAGAACA 416 * * ** ** * * *** *** * ** * * * **** consensus_2729#0 AGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGT 594 consensus_2729#1 AGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGT 476 ************************************************************ consensus_2729#0 GAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAAC 654 consensus_2729#1 GAGACATTAATTTGTTTTTTCTCAAATTTGCTAACTGACTAAGATGGAATACTGGATAAC 536 ************************************************************ consensus_2729#0 ATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATG 714 consensus_2729#1 ATAATCATCCCGTGTGAATATCTCCAAAGAACTGGATAAGGGCTCATTCAGATGTATATG 596 ************************************************************ consensus_2729#0 TCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTT 774 consensus_2729#1 TCATTGGTTGTTCAACACATTAATTATGCATTGATGACTGATTGGTGATGATTGTACCTT 656 ************************************************************ consensus_2729#0 ATGCGCATCACGCTGACAAGTAACTTGAGATGT------------------- 807 consensus_2729#1 ATGCGCATCACGCTGACAAGTAACTTGAGATGTTTATATTAGGATGGGAGAC 708 ********************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||