cluster # 2765

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Oryza sativa
cluster # 2765 cluster # 2765 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2765#0 length = 279 sequences # 1

consensus_2765#1 length = 240 sequences # 1

consensusID : consensus_2765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [TGCTGGCAACGATACCCTACGTAACGGGATGACAGGGTTTTTTTTTTTTTGCTGGCAACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTGGTGGCAACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTTGGTGGCAACCAAACCCTTCCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGGGGCAAAAAAACCCCTCCTAACGGGGTGAAAAGGGTTTTTTTTTTTTTTTTTAAAAAAAAAAGCAAGGCCCCTAAT]

[+] EMBL CF313822             [TGCTGGCAACGATACCCTACGTAACGGGATGACAGGGTTTTTTTTTTTTTGCTGGCAACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTGGTGGCAACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTTGGTGGCAACCAAACCCTTCCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGGGGCAAAAAAACCCCTCCTAACGGGGTGAAAAGGGTTTTTTTTTTTTTTTTTAAAAAAAAAAGCAAGGCCCCTAAT]




>consensus_2765#0
TGCTGGCAACGATACCCTACGTAACGGGATGACAGGGTTTTTTTTTTTTTGCTGGCAACG
ATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTGGTGGCAACGATACCCTACGT
AACGGGATGACAGGGGTTTTTTTTTTTTTGGTGGCAACCAAACCCTTCCTAACGGGATGA
CAGGGGTTTTTTTTTTTTTTTGGGGGCAAAAAAACCCCTCCTAACGGGGTGAAAAGGGTT
TTTTTTTTTTTTTTTAAAAAAAAAAGCAAGGCCCCTAAT

consensusID : consensus_2765#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [TTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGTTTTTTTTTTTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGTTTTTTTTTTTTTGCTGGCAACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTTGGTGGCAACGATACCCTACCTAACGGGATGACAGGGGTTTTTTTTTTTTGGTGGCAACAAAACCCTACCTAACGGGATGACAGGGGTTT]

[+] EMBL CF316316             [TTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGTTTTTTTTTTTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGTTTTTTTTTTTTTGCTGGCAACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTTGGTGGCAACGATACCCTACCTAACGGGATGACAGGGGTTTTTTTTTTTTGGTGGCAACAAAACCCTACCTAACGGGATGACAGGGGTTT]




>consensus_2765#1
TTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGTTTTTTTTTTTTTGCTGGCAA
CGATACCCTACGTAACGGCATGACAGGGTTTTTTTTTTTTTGCTGGCAACGATACCCTAC
GTAACGGGATGACAGGGGTTTTTTTTTTTTTGGTGGCAACGATACCCTACCTAACGGGAT
GACAGGGGTTTTTTTTTTTTGGTGGCAACAAAACCCTACCTAACGGGATGACAGGGGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2765#0      --TGCTGGCAACGATACCCTACGTAACGGGATGACAGGGTTTTTTTTTTTTTGCTGGCAA 58
consensus_2765#1      TTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGTTTTTTTTTTTTTGCTGGCAA 60
                        *************************** ******************************

consensus_2765#0      CGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTGGTGGCAACGATACCCTAC 118
consensus_2765#1      CGATACCCTACGTAACGGCATGACAGGGTTTTTTTTTTTTTGCTGGCAACGATACCCTAC 120
                      ****************** ********* ************* *****************

consensus_2765#0      GTAACGGGATGACAGGGGTTTTTTTTTTTTTGGTGGCAACCAAACCCTTCCTAACGGGAT 178
consensus_2765#1      GTAACGGGATGACAGGGGTTTTTTTTTTTTTGGTGGCAACGATACCCTACCTAACGGGAT 180
                      **************************************** * ***** ***********

consensus_2765#0      GACAGGGGTTTTTTTTTTTTTTTGGGGGCAAAAAAACCCCTCCTAACGGGGTGAAAAGGG 238
consensus_2765#1      GACAGGGGTTTTTTTTTTT---TGGTGGCAACAAAACCCTACCTAACGGGATGACAGGGG 237
                      *******************   *** ***** *******  ********* *** * ***

consensus_2765#0      TTTTTTTTTTTTTTTTTAAAAAAAAAAGCAAGGCCCCTAAT 279
consensus_2765#1      TTT-------------------------------------- 240
                      ***