|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1306 fasta sequence
[CTGCTCACAATGCGGCGCCTCCGGTTGATATTAGGCCCAGACAGCCAGCACGGCCCGTATTCGGCACTGCCATGAATAATACTTCTGCAGCTCTGCGAAATATGATAATCTCGCCTGTGAAACGTCCTCAGCTTTCCCGAAACCGTCCACATATGTTCACGTTGTAGAATTGGAAGAGCTGATGTGGCATCCTGCTTTGGAATCTGTCACGGTCTTGTCATGGACTTGCTAACTGTAAATGCAGTAAGATCAATCTGTCTCTTTCCCTCACTTCAATTTCTGCCCCATCATCTTGGTGTATAGAAACTGTTACAGAAGTCCCTTGGAAGAAGATTGTTAGGGAGGTTCTGATATATACTTGGGGCGCAAAGTCACTCCTTCCTGATTGCAATAACACGTAGTGTATCTGCAGCTAAATTCTTGGACTTTGTGACTGTCATCACACTAACCATCTACTATTAGTAGTAATAATTTACTACTGCTCGGGGTGGACTAACCCCTGAATGATGGGGACGGTTTTTCTAGGATTATGTTCTAGGGACCAGTACTGACTTGTCGGATGCGGGTTCTATAGCTGGAAACTACAAAGGGATCTGTTGTAATCGTGCCTTCTGTTGTTTATTATATTTGTAGTTACCTAAAATGCACTTAACCAGTTCTTCATTGAGCTATAGTACAGCACATCGTGGTCCTGAATTGTAGAAGTGGTACGTGGCATGCTATTTGTATGCACCCTAGCAAACTCATCAGCTCGAGACTAGCGCCTTTCGGCCTACCTGGACGAATTTTTATACCTTTCTGTCAACAACCCAAGGGATATGTCACGCCATCGCCCATCGATGATCAGCTGACGGCCACCGATCGTGAAGGCGAGAGGTACAGGATAAATACTATCCGTGATGGCTGCGTCTGCATTTTTTTTTTTGTTTAGCATTGTTCGGGTGACTATTTATGGCAGCGGGCCAGCTGCTCCACCGAGCTGAAGCCTCGTCACCGCCCACGTACGGTGCGGCGATTGGCTGGGCTTGCGCTCGCCGGAGACGCTCCTGATTTAAATTAATCGAATGATGAGGAGATTTTGTTCCAGCTAATCCCTCTTGAGGTTGACAGCGAAAGCGGAGAAAACGAAACCTGCCGCTCCAATCCGGAGGGTGACGCTGGGCCGGCTGAGCACGTCAGCACTCGCCATTGAAAAGGATTACGGGGTGTTTGATTTGATGCTTCTTGTCGCAACGTGATAGTACTTTAATTTGAGGAATGTGTTGGGTTAATTGTACTAACAATCATGGTTAATCGTACTACTCTG]
[+] EMBL AK108775 [CTGCTCACAATGCGGCGCCTCCGGTTGATATTAGGCCCAGACAGCCAGCACGGCCCGTATTCGGCACTGCCATGAATAATACTTCTGCAGCTCTGCGAAATATGATAATCTCGCCTGTGAAACGTCCTCAGCTTTCCCGAAACCGTCCACATATGTTCACGTTGTAGAATTGGAAGAGCTGATGTGGCATCCTGCTTTGGAATCTGTCACGGTCTTGTCATGGACTTGCTAACTGTAAATGCAGTAAGATCAATCTGTCTCTTTCCCTCACTTCAATTTCTGCCCCATCATCTTGGTGTATAGAAACTGTTACAGAAGTCCCTTGGAAGAAGATTGTTAGGGAGGTTCTGATATATACTTGGGGCGCAAAGTCACTCCTTCCTGATTGCAATAACACGTAGTGTATCTGCAGCTAAATTCTTGGACTTTGTGACTGTCATCACACTAACCATCTACTATTAGTAGTAATAATTTACTACTGCTCGGGGTGGACTAACCCCTGAATGATGGGGACGGTTTTTCTAGGATTATGTTCTAGGGACCAGTACTGACTTGTCGGATGCGGGTTCTATAGCTGGAAACTACAAAGGGATCTGTTGTAATCGTGCCTTCTGTTGTTTATTATATTTGTAGTTACCTAAAATGCACTTAACCAGTTCTTCATTGAGCTATAGTACAGCACATCGTGGTCCTGAATTGTAGAAGTGGTACGTGGCATGCTATTTGTATGCACCCTAGCAAACTCATCAGCTCGAGACTAGCGCCTTTCGGCCTACCTGGACGAATTTTTATACCTTTCTGTCAACAACCCAAGGGATATGTCACGCCATCGCCCATCGATGATCAGCTGACGGCCACCGATCGTGAAGGCGAGAGGTACAGGATAAATACTATCCGTGATGGCTGCGTCTGCATTTTTTTTTTTGTTTAGCATTGTTCGGGTGACTATTTATGGCAGCGGGCCAGCTGCTCCACCGAGCTGAAGCCTCGTCACCGCCCACGTACGGTGCGGCGATTGGCTGGGCTTGCGCTCGCCGGAGACGCTCCTGATTTAAATTAATCGAATGATGAGGAGATTTTGTTCCAGCTAATCCCTCTTGAGGTTGACAGCGAAAGCGGAGAAAACGAAACCTGCCGCTCCAATCCGGAGGGTGACGCTGGGCCGGCTGAGCACGTCAGCACTCGCCATTGAAAAGGATTACGGGGTGTTTGATTTGATGCTTCTTGTCGCAACGTGATAGTACTTTAATTTGAGGAATGTGTTGGGTTAATTGTACTAACAATCATGGTTAATCGTACTACTCTG]
consensusID : consensus_2766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1291 fasta sequence
[ATTTTGCCATTCTCCCGTTTCAAACCCGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCCCTGCCGCTGCTGCCGCCACCGCCGCGGCGGCGCCCCGATTCGGTGATCCCCCGCTCGCCCATCTCCGCCGTGACGTATCGGCGACGCGGAGGGAGCCCCCCACCCCCCACCTCCGGATCTAGGGTTTCGAGGCCCAGGTGGCGTTGCGCTGCGCCCCCGCTCCTCCGCCTCTCCTCCGCCGCCGAGGGTTCGCGTGAGGTTTCTGCGTATTACCAGCTCTGTACTTAATTTACTAGTGAGAAGCAAAATGAAGTGCAATGCTTGCTGGCGGGAGTTGGAAGGGCAAGCTGTATCAACAACCTGCGGTCATCTTTTATGTACAGAGGATGCTAAGAAAATACTGAGCAATGATGCTGCATGCCCGATTTGTGATCAAGTGCTTTCAAAAAGCCATATGAGACCTGTTGATACAAATCCAAATGATGATTGGACAAATATGTCAATGGCTGGAGTTTCTCCACAGATACTTATGAAGAGTGCATACAGAAGTGTCATGTTTTACATTGGGCAAAAGGAACTGGAGATGCAGTACAAGATGAACAGAATTGTTGGTCAGTGTAGGCAAAAGTGTGAACTTATGCAGGCAAAGTTCACTGAGAAGCTGGAAGAAGTTCATACTGCATACCAGAAAATGGCCAAAAAAATGCCAGTTGATGGAACAAGAGGTTGAAAACTTGTCGAGGGATAAGCAAGAGCTACAAGAAAAATTTGCTGAGAAATCCAGGCAGAAAAGGAAGCTTGATGAGATGTATGATCAGCTGAGAAGCGAGTATGAGTCGGCAAAGCGTTCAGCAATTCAACCTGCGAACAACTACTTCCCAAGAGCCCAGCCAGACCTGTTCTCAGGCGTGCCCAACATAATGGATAGCAGCGACCCTCTGAGACAAGGATTGGCTGGTCTTCCTGAAACTCCAGGGCGGAGAGATGAGGGATGGGCTCCACCACCAAGGCAACGTCGGTCCACCTCTGGACCATTTGAGCTGTCTGCGGGATCTCCTGCTCACAATGCGGCGCCTCCGGTTGATATTAGGCCCAGACAGCCAGCACGGCCCGTATTCGGCACTGCCATGAATAATACTTCTGCAGCTCTGCGAAATATGATAATCTCGCCTGTGAAACGTCCTCAGCTTTCCCGAAACCGTCCACATATGTTCACGTAATGTCCTCCTTATTGCTCATGCATGTATTTCACATCTAAATGAAGCAGTTTGGGAATGAAAATTGATGTC]
[+] EMBL AK100854 [ATTTTGCCATTCTCCCGTTTCAAACCCGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCCCTGCCGCTGCTGCCGCCACCGCCGCGGCGGCGCCCCGATTCGGTGATCCCCCGCTCGCCCATCTCCGCCGTGACGTATCGGCGACGCGGAGGGAGCCCCCCACCCCCCACCTCCGGATCTAGGGTTTCGAGGCCCAGGTGGCGTTGCGCTGCGCCCCCGCTCCTCCGCCTCTCCTCCGCCGCCGAGGGTTCGCGTGAGGTTTCTGCGTATTACCAGCTCTGTACTTAATTTACTAGTGAGAAGCAAAATGAAGTGCAATGCTTGCTGGCGGGAGTTGGAAGGGCAAGCTGTATCAACAACCTGCGGTCATCTTTTATGTACAGAGGATGCTAAGAAAATACTGAGCAATGATGCTGCATGCCCGATTTGTGATCAAGTGCTTTCAAAAAGCCATATGAGACCTGTTGATACAAATCCAAATGATGATTGGACAAATATGTCAATGGCTGGAGTTTCTCCACAGATACTTATGAAGAGTGCATACAGAAGTGTCATGTTTTACATTGGGCAAAAGGAACTGGAGATGCAGTACAAGATGAACAGAATTGTTGGTCAGTGTAGGCAAAAGTGTGAACTTATGCAGGCAAAGTTCACTGAGAAGCTGGAAGAAGTTCATACTGCATACCAGAAAATGGCCAAAAAAATGCCAGTTGATGGAACAAGAGGTTGAAAACTTGTCGAGGGATAAGCAAGAGCTACAAGAAAAATTTGCTGAGAAATCCAGGCAGAAAAGGAAGCTTGATGAGATGTATGATCAGCTGAGAAGCGAGTATGAGTCGGCAAAGCGTTCAGCAATTCAACCTGCGAACAACTACTTCCCAAGAGCCCAGCCAGACCTGTTCTCAGGCGTGCCCAACATAATGGATAGCAGCGACCCTCTGAGACAAGGATTGGCTGGTCTTCCTGAAACTCCAGGGCGGAGAGATGAGGGATGGGCTCCACCACCAAGGCAACGTCGGTCCACCTCTGGACCATTTGAGCTGTCTGCGGGATCTCCTGCTCACAATGCGGCGCCTCCGGTTGATATTAGGCCCAGACAGCCAGCACGGCCCGTATTCGGCACTGCCATGAATAATACTTCTGCAGCTCTGCGAAATATGATAATCTCGCCTGTGAAACGTCCTCAGCTTTCCCGAAACCGTCCACATATGTTCACGTAATGTCCTCCTTATTGCTCATGCATGTATTTCACATCTAAATGAAGCAGTTTGGGAATGAAAATTGATGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2766#0 -------------CTGCTCACAATGCGGCGCCTCCGGTTGATATTAGGCCCAGACAGCCA 47
consensus_2766#1 ATTTTGCCATTCTCCCGTTTCAAACCCGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCCCT 60
* * *** * **** * * * * * * * **
consensus_2766#0 GCACGGC-CCGTATTCGGCACTGCCATGAATAATACTTC--TGCAGCTCTGCGAAATATG 104
consensus_2766#1 CCCTGCCGCTGCTGCCGCCACCGCCGCGG-CGGCGCCCCGATTCGGTGATCCCCCGCTCG 119
* * * * * ** *** *** * * * * * * * * *
consensus_2766#0 ATAATCTCGCCTGTGAAACGTCCTCAGCTTTCCCGAAACCGTCCACATATGTTCAC--GT 162
consensus_2766#1 CCCATCTCCGCCGTGACGTATCGGCGACGCGGAGGGAGCCCCCCACCCCCCACCTCCGGA 179
***** * **** ** * * * * ** **** * * *
consensus_2766#0 TGTAGAATTGGAAGAGCTGATGTGGCATCCTGCTTTGGAATCTGTCACGGTCTTGTCATG 222
consensus_2766#1 TCTAGGGTTTCGAG-GCCCAGGTGGCGTTGCGCTGCG----CCCCCGCTCCTCCGCCTCT 234
* *** ** ** ** * ***** * *** * * * * * *
consensus_2766#0 GACTTGCTAACTGTAAATGCAGTAAGATCAATCTGTCTCTTTCCCTCACTTCAATTTCTG 282
consensus_2766#1 CCTCCGCCGCCGAGGGTTCGCGTGAGGTT--TCTGCGTATTACCAGCTCTGTACTTAATT 292
** * * ** ** * **** * ** ** * ** * ** *
consensus_2766#0 CCCCATCATCTTGGTGTATAGAAACTGTTACAGAAGTCCCTTGGAAGAAGATTGTTAGGG 342
consensus_2766#1 TACTAG-----TGAGAAGCAAAATGAAGTGCA-ATGCTTGCTGGCGGGAGTTGGAAGGGC 346
* * ** * ** * ** * * *** * ** * * **
consensus_2766#0 AGGTTCTGATATATACTTGGGGCGCAAAGTCACTCCTTCCTGATTGCAATAACACGTAGT 402
consensus_2766#1 AAGCTGTATCAACAACCTGCGGTCATCTTTTATGTACAGAGGATGCTAAGAAAATACTGA 406
* * * * * ** ** ** * * *** ** ** * *
consensus_2766#0 GTATCTGCAGCTAAATTCTTGGACTTTG--TGACTGTCATCACACTAACCATCTACTATT 460
consensus_2766#1 GCAA-TGATGCTGCATGCCCGATTTGTGATCAAGTGCTTTCAAAA-AGCCATATGAGACC 464
* * ** *** ** * * * ** * ** *** * * **** * *
consensus_2766#0 AGTAGTAATAATTTACTACTGCTCGGGGTGGACTAACCCCTGAATGATGGGGACGGTTTT 520
consensus_2766#1 TGTTGATACAAATC-CAAATGAT--GATTGGACAAATATGTCAATGGCTGG---AGTTTC 518
** * * ** * * * ** * * ***** ** * **** ** ****
consensus_2766#0 TCTAGGATTATGTTCTAGGGACCAGTACTGACTTGTCGGATGCGGGTTCTATAGCTGGAA 580
consensus_2766#1 TCCACAGATACTTATGAAGAGTGCATACAGAAGTGTCAT------GTTTTACATTGGGCA 572
** * ** * * * *** ** **** *** ** * ** *
consensus_2766#0 ACTACAAAGGGATCTGTTGTA-ATCGTGCCTTCTGTTGTTTATTATATTTGTAGTTACCT 639
consensus_2766#1 AAAGGAACTGGAGATGCAGTACAAGATGAACAGAATTGTTGGTCA---GTGTAGGCAAA- 628
* ** *** ** *** * ** ***** * * ***** *
consensus_2766#0 AAAATGCACTTAACCAGTTCTTCATTGAGCTATAGTACAGCACATCGTGGTCCTGAATTG 699
consensus_2766#1 AGTGTGAACTTATGCAGG-CAAAGTTCACTGAGAAGCTGGAAGAAGTTCATACTGCATAC 687
* ** ***** *** * ** * * * * * * * * *** **
consensus_2766#0 TAGAAG-TGGTACGTGGCATGCTATTTGTATGCACCCTAGCAAACTCATCAGCTCGAGAC 758
consensus_2766#1 CAGAAAATGGCCAAAAAAATGCCAGTTG-ATGGA-----ACAAG------AGGTTGAAA- 734
**** *** **** * *** *** * *** ** * ** *
consensus_2766#0 TAGCGCCTTTCGGCCTACCTGGACGAATTTTTATACCTTTCTGTCAACAACCCAAGGGAT 818
consensus_2766#1 ----ACTTGTCGAGGGATAAGCAAGAGCTACAAGAAAAATTTGCTGAGAAATCCAGGCAG 790
* * *** * * * ** * * * * ** * ** * *** *
consensus_2766#0 ATGTCACGCCATCGCCCATCG-ATGATCAGCTGACGGCCACCGATCGTGAAGGCGAGAGG 877
consensus_2766#1 AAAAGGAAGCTTGATGAGATGTATGATCAGCTGAGAAGCGAGTAT-GAGTCGGCAAAGCG 849
* * * * ************ * ** * * *** * *
consensus_2766#0 TACAGGATAAATACTATCCGTGA-TGGCTGCGTCT-----GCATTTTTTTTTTTGTTTAG 931
consensus_2766#1 TTCAGC---AATTCAACCTGCGAACAACTACTTCCCAAGAGCCCAGCCAGACCTGTTCTC 906
* *** *** * * * * ** ** * ** ** ****
consensus_2766#0 CATTGTTCGGGTGACTATTTATGGCAGCGGGCCAGCTGCTCCACCGAGCTGA-AGCCTCG 990
consensus_2766#1 AGGCGTGCCCAACATAATGGATAGCAGCGA-CCCTCTGAGACAAGGATTGGCTGGTCTTC 965
** * * ** ** ****** ** *** ** ** * * **
consensus_2766#0 TCACCGCCCACGTACGGTGCGGCGATTGGCTGGGCTTGCGCTC--GCCGGAGACGCTCCT 1048
consensus_2766#1 CTGAAACTCCAGGGCGGAGAGATGAGGGATGGGCTCCACCACCAAGGCAACGTCGGTCCA 1025
* * * *** * * ** * ** * * * * * ** ***
consensus_2766#0 GATTTAAATTAATCGAATGATGAGGAGATTTTGTTCCAGCTAATCC--CTCTTGAGGTTG 1106
consensus_2766#1 CCTCTGGACCATTTGAGCTGTCTGCGGGATCTCCTGCTCACAATGCGGCGCCTCCGGTTG 1085
* * * * * ** * * * * * * * *** * * * * *****
consensus_2766#0 ACAGCGAAAGCGGAGAA--AACGAAACCTGC-CGCTCCAATCCGGAGGGTGACGCT---- 1159
consensus_2766#1 ATATTAGGCCCAGACAGCCAGCACGGCCCGTATTCGGCACTGCCATGAATAATACTTCTG 1145
* * * ** * * * ** * * ** * * * * * **
consensus_2766#0 -GGGCCGGCTGAGCACGTCAGCACTCGCCATTGAAAAGGATTACGGGGTGTTTGATTTGA 1218
consensus_2766#1 CAGCTCTGCGAAATATGATAAT-CTCGCCTGTGAAACGTCCT-CAGCTTTCCCGAAACCG 1203
* * ** * * * * ****** ***** * * * * * **
consensus_2766#0 TGCTTCTTGTCGCAACGTGATAGTACTTTAATT--TGAGGAATGTGTTGGGTTAATTGTA 1276
consensus_2766#1 T-CCACATATGTTCACGTAATGTCCTCCTTATTGCTCATGCATGTATTTCAC-ATCTAAA 1261
* * * * * **** ** * *** * * * **** ** * * *
consensus_2766#0 CTAACAATCATGGTTAATCGTACTACTCTG 1306
consensus_2766#1 TGAAGCAGTTTGGGAATGAAAATTGATGTC 1291
** * *** * * * * *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||