cluster # 2767

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Oryza sativa
cluster # 2767 cluster # 2767 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2767#0 length = 450 sequences # 1

consensus_2767#1 length = 433 sequences # 1

consensusID : consensus_2767#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [ATCACCNACATCGGGGTGAGGAAGGACGTCGTCAAGGTGGAGGTGGAGANCCTGTCGGCGCATCTTGGCTGGCGTCGCGCCAAAGCCGAGGAAGAAATGGCCATGAAAAAACAGCAGCCTTCATCACATGATACTNAGGTCAAGAAGAGTTTACTTCCTCTCAAGAGAAAACGTGACAATTTCTGCGAAATTATTACGAGCTGAAATTCTACTACAATTTGTATGGTTTTGTGTGGATAGGTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGATTTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAATTGGGTGTGCCAAGGAGATTGGATTGCTGTACCACTATAGTATTATAGTCAGAAAATTTACTNTCTNTCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU101523             [ATCACCNACATCGGGGTGAGGAAGGACGTCGTCAAGGTGGAGGTGGAGANCCTGTCGGCGCATCTTGGCTGGCGTCGCGCCAAAGCCGAGGAAGAAATGGCCATGAAAAAACAGCAGCCTTCATCACATGATACTNAGGTCAAGAAGAGTTTACTTCCTCTCAAGAGAAAACGTGACAATTTCTGCGAAATTATTACGAGCTGAAATTCTACTACAATTTGTATGGTTTTGTGTGGATAGGTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGATTTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAATTGGGTGTGCCAAGGAGATTGGATTGCTGTACCACTATAGTATTATAGTCAGAAAATTTACTNTCTNTCAAAAAAAAAAAAAAAAAAAAAA]




>consensus_2767#0
ATCACCNACATCGGGGTGAGGAAGGACGTCGTCAAGGTGGAGGTGGAGANCCTGTCGGCG
CATCTTGGCTGGCGTCGCGCCAAAGCCGAGGAAGAAATGGCCATGAAAAAACAGCAGCCT
TCATCACATGATACTNAGGTCAAGAAGAGTTTACTTCCTCTCAAGAGAAAACGTGACAAT
TTCTGCGAAATTATTACGAGCTGAAATTCTACTACAATTTGTATGGTTTTGTGTGGATAG
GTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGAT
TTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAAT
TGGGTGTGCCAAGGAGATTGGATTGCTGTACCACTATAGTATTATAGTCAGAAAATTTAC
TNTCTNTCAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_2767#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [GGAAGAAATGGCCATGAAAAAACAGCAGCCTTCATCACATGATACTAAGGTCAAGAAGAGTTTACTTCCTNTCAANAGAAAACGTGACAATTTNTGCGAAATTATTACGAGCTGAAATTNTACTACAATTTGTATGGTTTTGTGTGGATAGGTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGATTTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAATTGGGTGTGCCAAGGAGATTGGATTGCTGTACCNCTATAGTATTATAGTCAGAAAATTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCATTTGAACCATCTAGTAGTATATATCTCTGTATTNTGATAAAAAAAAAAAAAAA]

[+] EMBL AU197913             [GGAAGAAATGGCCATGAAAAAACAGCAGCCTTCATCACATGATACTAAGGTCAAGAAGAGTTTACTTCCTNTCAANAGAAAACGTGACAATTTNTGCGAAATTATTACGAGCTGAAATTNTACTACAATTTGTATGGTTTTGTGTGGATAGGTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGATTTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAATTGGGTGTGCCAAGGAGATTGGATTGCTGTACCNCTATAGTATTATAGTCAGAAAATTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCATTTGAACCATCTAGTAGTATATATCTCTGTATTNTGATAAAAAAAAAAAAAAA]




>consensus_2767#1
GGAAGAAATGGCCATGAAAAAACAGCAGCCTTCATCACATGATACTAAGGTCAAGAAGAG
TTTACTTCCTNTCAANAGAAAACGTGACAATTTNTGCGAAATTATTACGAGCTGAAATTN
TACTACAATTTGTATGGTTTTGTGTGGATAGGTTTTGGAGTTAAAATGCAATAAGTCCTG
GAAATATATGAAGCGTCAAGTGTGCTTTGATTTAATCAAGCATTCGCTGTCTCTGTGTGT
GTGTGATAGATAGATCGATCTGATCATGAATTGGGTGTGCCAAGGAGATTGGATTGCTGT
ACCNCTATAGTATTATAGTCAGAAAATTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTTTTTCATTTGAACCATCTAGTAGTATATATCTCTGTATTNTGATAA
AAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2767#0      ATCACCNACATCGGGGTGAGGAAGGACGTCGTCAAGGTGGAGGTGGAGANCCTGTCGGCG 60
consensus_2767#1      ------------------------------------------------------------
                                                                                  

consensus_2767#0      CATCTTGGCTGGCGTCGCGCCAAAGCCGAGGAAGAAATGGCCATGAAAAAACAGCAGCCT 120
consensus_2767#1      -----------------------------GGAAGAAATGGCCATGAAAAAACAGCAGCCT 31
                                                   *******************************

consensus_2767#0      TCATCACATGATACTNAGGTCAAGAAGAGTTTACTTCCTCTCAAGAGAAAACGTGACAAT 180
consensus_2767#1      TCATCACATGATACTAAGGTCAAGAAGAGTTTACTTCCTNTCAANAGAAAACGTGACAAT 91
                      *************** *********************** **** ***************

consensus_2767#0      TTCTGCGAAATTATTACGAGCTGAAATTCTACTACAATTTGTATGGTTTTGTGTGGATAG 240
consensus_2767#1      TTNTGCGAAATTATTACGAGCTGAAATTNTACTACAATTTGTATGGTTTTGTGTGGATAG 151
                      ** ************************* *******************************

consensus_2767#0      GTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGAT 300
consensus_2767#1      GTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGAT 211
                      ************************************************************

consensus_2767#0      TTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAAT 360
consensus_2767#1      TTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAAT 271
                      ************************************************************

consensus_2767#0      TGGGTGTGCCAAGGAGATTGGATTGCTGTACCACTATAGTATTATAGTCAGAAAATTTAC 420
consensus_2767#1      TGGGTGTGCCAAGGAGATTGGATTGCTGTACCNCTATAGTATTATAGTCAGAAAATTTAC 331
                      ******************************** ***************************

consensus_2767#0      TNTCTNTCAAAAAAAAAAAAAAAAAAAAAA------------------------------ 450
consensus_2767#1      TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCATTTGAACCATC 391
                      * *** **                                                    

consensus_2767#0      ------------------------------------------
consensus_2767#1      TAGTAGTATATATCTCTGTATTNTGATAAAAAAAAAAAAAAA 433