cluster # 2805

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Oryza sativa
cluster # 2805 cluster # 2805 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2805#0 length = 501 sequences # 1

consensus_2805#1 length = 336 sequences # 1

consensusID : consensus_2805#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTAACGAACCAACTATACATTCATCTACAGGGTTACAAATGTATGACAATTCCAGCCTTTCGGCTTAGCCATTTCGTCGAACAGTTGGTGAGCGAGATGAATCAGCATCACAAACTAGCTCTACGCTCGCTTAACTGGTCACAGGTTCTGGATTTGGGATGAAGTAGAGTTGAGTACTTACTGGAAGCTAACTGATTCGCATACGAAGAAGATGAAAAAGAAAAAAAGAATCTCACGGAAGCAAGCAAAGGATGGAAGGAACAGGACAATGAATTGATTATTACCTGGATGAACACAAGGTGGCCGGGTTAGTGATGGCGCACGGGAGGCGATTCGTCGACGAGGAGAAGAGGAAATAGGCGAGCCTCCGGAACAACGAGGCGGGGCGGAGGAGGACGAATCTCGCCACAGACTATTTATAGATCCGACGGCTCACGTTAGCATTAAATGG]

[+] EMBL CB965146             [ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTAACGAACCAACTATACATTCATCTACAGGGTTACAAATGTATGACAATTCCAGCCTTTCGGCTTAGCCATTTCGTCGAACAGTTGGTGAGCGAGATGAATCAGCATCACAAACTAGCTCTACGCTCGCTTAACTGGTCACAGGTTCTGGATTTGGGATGAAGTAGAGTTGAGTACTTACTGGAAGCTAACTGATTCGCATACGAAGAAGATGAAAAAGAAAAAAAGAATCTCACGGAAGCAAGCAAAGGATGGAAGGAACAGGACAATGAATTGATTATTACCTGGATGAACACAAGGTGGCCGGGTTAGTGATGGCGCACGGGAGGCGATTCGTCGACGAGGAGAAGAGGAAATAGGCGAGCCTCCGGAACAACGAGGCGGGGCGGAGGAGGACGAATCTCGCCACAGACTATTTATAGATCCGACGGCTCACGTTAGCATTAAATGG]




>consensus_2805#0
ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTAACGAACC
AACTATACATTCATCTACAGGGTTACAAATGTATGACAATTCCAGCCTTTCGGCTTAGCC
ATTTCGTCGAACAGTTGGTGAGCGAGATGAATCAGCATCACAAACTAGCTCTACGCTCGC
TTAACTGGTCACAGGTTCTGGATTTGGGATGAAGTAGAGTTGAGTACTTACTGGAAGCTA
ACTGATTCGCATACGAAGAAGATGAAAAAGAAAAAAAGAATCTCACGGAAGCAAGCAAAG
GATGGAAGGAACAGGACAATGAATTGATTATTACCTGGATGAACACAAGGTGGCCGGGTT
AGTGATGGCGCACGGGAGGCGATTCGTCGACGAGGAGAAGAGGAAATAGGCGAGCCTCCG
GAACAACGAGGCGGGGCGGAGGAGGACGAATCTCGCCACAGACTATTTATAGATCCGACG
GCTCACGTTAGCATTAAATGG

consensusID : consensus_2805#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTCACACGAACCCAACTATACATTCATCTACAGGGTTACAAATGTATGACCAATTCCCAGCCTTTCGGCTTAGCCCATTTCGTCGAACAGTGGGTGCAGCGAGATGAATCAGCATCCACAAACTCACTCTACGCCTCGCTTACCTGGTCCCCGGTTCTGGCATTTGGGCATGAAGTCACAGTGCAGTACTTACTGGCCAGCTCACTGCATTCGCCATCACGCACGCAACATGCAACAAACAACAAAAGACATCTCCCGGCCAGCCAAGCCAAAGGCATGGAAGGCA]

[+] EMBL CB966206             [ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTCACACGAACCCAACTATACATTCATCTACAGGGTTACAAATGTATGACCAATTCCCAGCCTTTCGGCTTAGCCCATTTCGTCGAACAGTGGGTGCAGCGAGATGAATCAGCATCCACAAACTCACTCTACGCCTCGCTTACCTGGTCCCCGGTTCTGGCATTTGGGCATGAAGTCACAGTGCAGTACTTACTGGCCAGCTCACTGCATTCGCCATCACGCACGCAACATGCAACAAACAACAAAAGACATCTCCCGGCCAGCCAAGCCAAAGGCATGGAAGGCA]




>consensus_2805#1
ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTCACACGAA
CCCAACTATACATTCATCTACAGGGTTACAAATGTATGACCAATTCCCAGCCTTTCGGCT
TAGCCCATTTCGTCGAACAGTGGGTGCAGCGAGATGAATCAGCATCCACAAACTCACTCT
ACGCCTCGCTTACCTGGTCCCCGGTTCTGGCATTTGGGCATGAAGTCACAGTGCAGTACT
TACTGGCCAGCTCACTGCATTCGCCATCACGCACGCAACATGCAACAAACAACAAAAGAC
ATCTCCCGGCCAGCCAAGCCAAAGGCATGGAAGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2805#0      ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTAACG---A 57
consensus_2805#1      ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTCACACGAA 60
                      **************************************************** **    *

consensus_2805#0      ACCAACTATACATTCATCTACAGGGTTACAAATGTATGACAA--TTCCAGCCTTTCGGCT 115
consensus_2805#1      CCCAACTATACATTCATCTACAGGGTTACAAATGTATGACCAATTCCCAGCCTTTCGGCT 120
                       *************************************** *  * **************

consensus_2805#0      TAGCC-ATTTCGTCGAACAGTTGGTG-AGCGAGATGAATCAGCATC-ACAAACTAGCTCT 172
consensus_2805#1      TAGCCCATTTCGTCGAACAGTGGGTGCAGCGAGATGAATCAGCATCCACAAACTCACTCT 180
                      ***** *************** **** ******************* *******  ****

consensus_2805#0      ACGC-TCGCTTAACTGGTCACAGGTTCTGG-ATTTGGG-ATGAAGT-AGAGTTGAGTACT 228
consensus_2805#1      ACGCCTCGCTTACCTGGTCCCCGGTTCTGGCATTTGGGCATGAAGTCACAGTGCAGTACT 240
                      **** ******* ****** * ******** ******* ******* * ***  ******

consensus_2805#0      TACTGGA-AGCTAACTG-ATTCGC------ATACGAAGAAGATGAAAAAGAAAAAAAGA- 279
consensus_2805#1      TACTGGCCAGCTCACTGCATTCGCCATCACGCACGCAACATGCAACAAACAACAAAAGAC 300
                      ******  **** **** ******        *** *  *    * *** ** ****** 

consensus_2805#0      ATCTCACGG--AAGCAAGCAAAGG--ATGGAAGGAACAGGACAATGAATTGATTATTACC 335
consensus_2805#1      ATCTCCCGGCCAGCCAAGCCAAAGGCATGGAAGGCA------------------------ 336
                      ***** ***  *  ***** ** *  ******** *                        

consensus_2805#0      TGGATGAACACAAGGTGGCCGGGTTAGTGATGGCGCACGGGAGGCGATTCGTCGACGAGG 395
consensus_2805#1      ------------------------------------------------------------
                                                                                  

consensus_2805#0      AGAAGAGGAAATAGGCGAGCCTCCGGAACAACGAGGCGGGGCGGAGGAGGACGAATCTCG 455
consensus_2805#1      ------------------------------------------------------------
                                                                                  

consensus_2805#0      CCACAGACTATTTATAGATCCGACGGCTCACGTTAGCATTAAATGG 501
consensus_2805#1      ----------------------------------------------