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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2812 cluster # 2812       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2812#0 length = 132 sequences # 1  
consensus_2812#1 length = 90 sequences # 1  

consensusID : consensus_2812#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 132
fasta sequence
                              [CCAGCACATCTCCAGTCACTCCCATTTGCACACAGTCCAGAGCACATCGTCACCACCATGGGACCACACCCACACCACTGCTGCACTGCCTTCTGCACCACTGCACAGCAGCAGCAGCACACATCATTATTG]

[+] EMBL CB965209             [CCAGCACATCTCCAGTCACTCCCATTTGCACACAGTCCAGAGCACATCGTCACCACCATGGGACCACACCCACACCACTGCTGCACTGCCTTCTGCACCACTGCACAGCAGCAGCAGCACACATCATTATTG]


>consensus_2812#0 CCAGCACATCTCCAGTCACTCCCATTTGCACACAGTCCAGAGCACATCGTCACCACCATG GGACCACACCCACACCACTGCTGCACTGCCTTCTGCACCACTGCACAGCAGCAGCAGCAC ACATCATTATTG



consensusID : consensus_2812#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 90
fasta sequence
                              [CATATGCACACATCCAGCACAATCGTCACCACCAGTGGGCCACACCCAACCACTGCTGCACTGCCCTCTGCACCACTGCACAGCAGCAGC]

[+] EMBL CB965939             [CATATGCACACATCCAGCACAATCGTCACCACCAGTGGGCCACACCCAACCACTGCTGCACTGCCCTCTGCACCACTGCACAGCAGCAGC]


>consensus_2812#1 CATATGCACACATCCAGCACAATCGTCACCACCAGTGGGCCACACCCAACCACTGCTGCA CTGCCCTCTGCACCACTGCACAGCAGCAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2812#0      CCAGCACATCTCCAGTCACTCCCATTTGCACACAGTCCAGAGCACATCGTCACCACCATG 60
consensus_2812#1      ----------------------CATATGCACACA-TCCAGCACA-ATCGTCACCACCAGT 36
                                            *** ******** *****  ** *************  

consensus_2812#0      GGACCACACCCACACCACTGCTGCACTGCCTTCTGCACCACTGCACAGCAGCAGCAGCAC 120
consensus_2812#1      GGGCCACACCCA-ACCACTGCTGCACTGCCCTCTGCACCACTGCACAGCAGCAGC----- 90
                      ** ********* ***************** ************************     

consensus_2812#0      ACATCATTATTG 132
consensus_2812#1      ------------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)