|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1430 fasta sequence
[TGCAAATGGATTGTCGAGATGCTTTGGGTTTGTAAACTTTGAGAAATCAGAATGTGCTAGAAATGCAGTTAAAAATCTCAATGGGAAGTCCATTGGTAATATGGTGTTATATGTTGCAAGGGCTCAGAAAAAATCAGAAAGACAAGCTGAGTTAAAAGCGAAATTTGAGCATGACAAAAATCAGAAATTTGAGAAGCTTCAAACAGTCAATCTATACTTGAAGAATTTGGATGATGACATCAATGATGAGCATCTTAGGAAGTTGTTTGAATGTTTTGGTGAGGTAGCATCATGCAAGGTCATGCTTGATTCGCATGGAAGGAGCAAGGGTTGTGGATTTGTATCTTTTGCAACTGTTGAAGACGCTAACAATGCTATTTTAAAAATGAACGGGAAAATGGTTGGGAAAAAGCCATTATATGTTGCCGTAGCTCAACGGAAGGAGGAGAGAAAGGCATTTTTAGCGGCACATTTTGCTCGTGTTAGAGCCCTAGCAACAATGGCACCTACATTAGGGCCAAACATTGCTCCCCATCAGTTCAATTTTGGCCATGGTGTGCCTGCCTTGTTCCCACCACCACCACCTGCAGGCTTTGGGTTCCAACCAAATTTTGTTCCAAACATGATGATGCCATATAACATGCAAAGGCAGCCTGGCCAGAGGAGTGGTCCTCCGCATGGAGGAATGCCTAGACATCTGCATAATCCTCACCAGATGTTTCACCAAAATGCCAACCAGGGCTTCAGACACATGCCAAATCGTAGGAATGGTGTGGCCAACCCAGCAATGTTGCATCAGCACCATCGCTTCTCTAGCCCAATGCAGCCAATGCAACAAGCTGTCAAGCATGTGGTGCCCGTGGGGGAATTGCAAGCTCCAAGCAATAACCTTCAGACTTCCTTGGCTTCTGCGAACCCGGAACAACAACGAGAGATTCTTGGCGACATGTTGTTCCCGCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCTGGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGCTGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGCCGCCGCTTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGTGTTGGTGGCCGGATGAATTATCATAATAAGATGAACTTTTGAAGTCGTGTGTTTTGGACTTGGGAACTGTTTAGATGACTGTTCAGTTTATGACTTTAGCAGCTTGCGTTTGCAGATTATTTGGAGTATTGGTTATGGTTGTGTACTCTTTATGTTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTGTGGATGGTTAATTAGGATTTTTTGTTGAAATGGATCCTTA]
[+] EMBL AK064233 [TGCAAATGGATTGTCGAGATGCTTTGGGTTTGTAAACTTTGAGAAATCAGAATGTGCTAGAAATGCAGTTAAAAATCTCAATGGGAAGTCCATTGGTAATATGGTGTTATATGTTGCAAGGGCTCAGAAAAAATCAGAAAGACAAGCTGAGTTAAAAGCGAAATTTGAGCATGACAAAAATCAGAAATTTGAGAAGCTTCAAACAGTCAATCTATACTTGAAGAATTTGGATGATGACATCAATGATGAGCATCTTAGGAAGTTGTTTGAATGTTTTGGTGAGGTAGCATCATGCAAGGTCATGCTTGATTCGCATGGAAGGAGCAAGGGTTGTGGATTTGTATCTTTTGCAACTGTTGAAGACGCTAACAATGCTATTTTAAAAATGAACGGGAAAATGGTTGGGAAAAAGCCATTATATGTTGCCGTAGCTCAACGGAAGGAGGAGAGAAAGGCATTTTTAGCGGCACATTTTGCTCGTGTTAGAGCCCTAGCAACAATGGCACCTACATTAGGGCCAAACATTGCTCCCCATCAGTTCAATTTTGGCCATGGTGTGCCTGCCTTGTTCCCACCACCACCACCTGCAGGCTTTGGGTTCCAACCAAATTTTGTTCCAAACATGATGATGCCATATAACATGCAAAGGCAGCCTGGCCAGAGGAGTGGTCCTCCGCATGGAGGAATGCCTAGACATCTGCATAATCCTCACCAGATGTTTCACCAAAATGCCAACCAGGGCTTCAGACACATGCCAAATCGTAGGAATGGTGTGGCCAACCCAGCAATGTTGCATCAGCACCATCGCTTCTCTAGCCCAATGCAGCCAATGCAACAAGCTGTCAAGCATGTGGTGCCCGTGGGGGAATTGCAAGCTCCAAGCAATAACCTTCAGACTTCCTTGGCTTCTGCGAACCCGGAACAACAACGAGAGATTCTTGGCGACATGTTGTTCCCGCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCTGGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGCTGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGCCGCCGCTTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGTGTTGGTGGCCGGATGAATTATCATAATAAGATGAACTTTTGAAGTCGTGTGTTTTGGACTTGGGAACTGTTTAGATGACTGTTCAGTTTATGACTTTAGCAGCTTGCGTTTGCAGATTATTTGGAGTATTGGTTATGGTTGTGTACTCTTTATGTTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTGTGGATGGTTAATTAGGATTTTTTGTTGAAATGGATCCTTA]
consensusID : consensus_2816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[TTCCTTAGCTTCTCCGAACCCGGAACATACCATACGAGAGATTCTTGCGACATGTTGTTCCCGCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCTGGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGCTGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGCTTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGTGTTGGTGCGCCGGATGAATTATCACTAATTAACGAAGGAACCTTTTGAAGTCGTGTGATATATTGGACCTTGTGAACCTGTTTACGATGACCTGTTCCACGCTTTATGACCTTTAGCACGCCTTGCCGCTTTGCCACGATTTATTTGAAGTGTTTGGTTATGGTTGTGTACCTCTTTATGTTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTGGATGGTTAATTAGGATTTTTGTTGAAATGGATCCTTATTTCAGACTCAAAAAAAAAA]
[+] EMBL BI803919 [TTCCTTAGCTTCTCCGAACCCGGAACATACCATACGAGAGATTCTTGCGACATGTTGTTCCCGCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCTGGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGCTGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGCTTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGTGTTGGTGCGCCGGATGAATTATCACTAATTAACGAAGGAACCTTTTGAAGTCGTGTGATATATTGGACCTTGTGAACCTGTTTACGATGACCTGTTCCACGCTTTATGACCTTTAGCACGCCTTGCCGCTTTGCCACGATTTATTTGAAGTGTTTGGTTATGGTTGTGTACCTCTTTATGTTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTGGATGGTTAATTAGGATTTTTGTTGAAATGGATCCTTATTTCAGACTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2816#0 TGCAAATGGATTGTCGAGATGCTTTGGGTTTGTAAACTTTGAGAAATCAGAATGTGCTAG 60
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 AAATGCAGTTAAAAATCTCAATGGGAAGTCCATTGGTAATATGGTGTTATATGTTGCAAG 120
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 GGCTCAGAAAAAATCAGAAAGACAAGCTGAGTTAAAAGCGAAATTTGAGCATGACAAAAA 180
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 TCAGAAATTTGAGAAGCTTCAAACAGTCAATCTATACTTGAAGAATTTGGATGATGACAT 240
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 CAATGATGAGCATCTTAGGAAGTTGTTTGAATGTTTTGGTGAGGTAGCATCATGCAAGGT 300
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 CATGCTTGATTCGCATGGAAGGAGCAAGGGTTGTGGATTTGTATCTTTTGCAACTGTTGA 360
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 AGACGCTAACAATGCTATTTTAAAAATGAACGGGAAAATGGTTGGGAAAAAGCCATTATA 420
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 TGTTGCCGTAGCTCAACGGAAGGAGGAGAGAAAGGCATTTTTAGCGGCACATTTTGCTCG 480
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 TGTTAGAGCCCTAGCAACAATGGCACCTACATTAGGGCCAAACATTGCTCCCCATCAGTT 540
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 CAATTTTGGCCATGGTGTGCCTGCCTTGTTCCCACCACCACCACCTGCAGGCTTTGGGTT 600
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 CCAACCAAATTTTGTTCCAAACATGATGATGCCATATAACATGCAAAGGCAGCCTGGCCA 660
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 GAGGAGTGGTCCTCCGCATGGAGGAATGCCTAGACATCTGCATAATCCTCACCAGATGTT 720
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 TCACCAAAATGCCAACCAGGGCTTCAGACACATGCCAAATCGTAGGAATGGTGTGGCCAA 780
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 CCCAGCAATGTTGCATCAGCACCATCGCTTCTCTAGCCCAATGCAGCCAATGCAACAAGC 840
consensus_2816#1 ------------------------------------------------------------
consensus_2816#0 TGTCAAGCATGTGGTGCCCGTGGGGGAATTGCAAGCTCCAAGCAATAACCTTCAGACTTC 900
consensus_2816#1 ---------------------------------------------------------TTC 3
***
consensus_2816#0 CTTGGCTTCTGCGAACCCGGAACA-ACAA--CGAGAGATTCTTGGCGACATGTTGTTCCC 957
consensus_2816#1 CTTAGCTTCTCCGAACCCGGAACATACCATACGAGAGATTCTTG-CGACATGTTGTTCCC 62
*** ****** ************* ** * ************* ***************
consensus_2816#0 GCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCT 1017
consensus_2816#1 GCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCT 122
************************************************************
consensus_2816#0 GGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGC 1077
consensus_2816#1 GGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGC 182
************************************************************
consensus_2816#0 TGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGCCGCCGC 1137
consensus_2816#1 TGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGC------ 236
******************************************************
consensus_2816#0 TTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGT 1197
consensus_2816#1 TTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGT 296
************************************************************
consensus_2816#0 GTTGGTG-GCCGGATGAATTATCA-----TAATAAGATGAACTTTTGAAGTCGTGTGTT- 1250
consensus_2816#1 GTTGGTGCGCCGGATGAATTATCACTAATTAACGAAGGAACCTTTTGAAGTCGTGTGATA 356
******* **************** *** * * **************** *
consensus_2816#0 --TTGGAC-TTGGGAAC-TGTTTA-GATGAC-TGTTCAG---TTTATGAC-TTTAGCAG- 1299
consensus_2816#1 TATTGGACCTTGTGAACCTGTTTACGATGACCTGTTCCACGCTTTATGACCTTTAGCACG 416
****** *** **** ****** ****** ***** ******** *******
consensus_2816#0 -CTTGC-GTTT----GCAGATTATTTGGAGTATT-GGTTATGGTTGTGTAC-TCTTTATG 1351
consensus_2816#1 CCTTGCCGCTTTGCCACGATTTATTTGAAGTGTTTGGTTATGGTTGTGTACCTCTTTATG 476
***** * ** * ******* *** ** **************** ********
consensus_2816#0 TTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTGTGGATGGTTAATTAGGATTTT 1411
consensus_2816#1 TTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTG--GATGGTTAATTAGGATTTT 534
*************************************** *******************
consensus_2816#0 TTGTTGAAATGGATCCTTA-------------------- 1430
consensus_2816#1 T-GTTGAAATGGATCCTTATTTCAGACTCAAAAAAAAAA 572
* *****************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||