cluster # 2817

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Oryza sativa
cluster # 2817 cluster # 2817 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2817#0 length = 302 sequences # 1

consensus_2817#1 length = 156 sequences # 1

consensusID : consensus_2817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence

                              [TAGCCGGAGCTTTCCATAGATTTCATTCCACATATGCGCTCTACCCCAACCAACATCATCAGTCGTAGCCAGCATACCCACTCTTCACATCCAAGTCCAGAGCAGAGCATCAGGTGCAAACACAAAACACAAAGCAGCAGCACGGGCCGGGTCAAAATCCAAAAGCACGCATGCACACAAACGTGGGCACACCACCACGCAACACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCAGCATGCACACACATTCAAACGCAGGCGTCATCATATGCACGCATGCACGGCGTTCAGTTGCC]

[+] EMBL CB965284             [TAGCCGGAGCTTTCCATAGATTTCATTCCACATATGCGCTCTACCCCAACCAACATCATCAGTCGTAGCCAGCATACCCACTCTTCACATCCAAGTCCAGAGCAGAGCATCAGGTGCAAACACAAAACACAAAGCAGCAGCACGGGCCGGGTCAAAATCCAAAAGCACGCATGCACACAAACGTGGGCACACCACCACGCAACACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCAGCATGCACACACATTCAAACGCAGGCGTCATCATATGCACGCATGCACGGCGTTCAGTTGCC]




>consensus_2817#0
TAGCCGGAGCTTTCCATAGATTTCATTCCACATATGCGCTCTACCCCAACCAACATCATC
AGTCGTAGCCAGCATACCCACTCTTCACATCCAAGTCCAGAGCAGAGCATCAGGTGCAAA
CACAAAACACAAAGCAGCAGCACGGGCCGGGTCAAAATCCAAAAGCACGCATGCACACAA
ACGTGGGCACACCACCACGCAACACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCA
GCATGCACACACATTCAAACGCAGGCGTCATCATATGCACGCATGCACGGCGTTCAGTTG
CC

consensusID : consensus_2817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 156
fasta sequence

                              [AAAACACAAAAGCCAGCAGCCACGGCGCGGTCAAAATCGAAAAGCACGCATGCAACCAAACGTGGGCACACACGACGCAAACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCAGCATGCAACCAATTCAACACGCAGGCTCATCATATGCAC]

[+] EMBL CB965820             [AAAACACAAAAGCCAGCAGCCACGGCGCGGTCAAAATCGAAAAGCACGCATGCAACCAAACGTGGGCACACACGACGCAAACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCAGCATGCAACCAATTCAACACGCAGGCTCATCATATGCAC]




>consensus_2817#1
AAAACACAAAAGCCAGCAGCCACGGCGCGGTCAAAATCGAAAAGCACGCATGCAACCAAA
CGTGGGCACACACGACGCAAACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCAGCA
TGCAACCAATTCAACACGCAGGCTCATCATATGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2817#0      TAGCCGGAGCTTTCCATAGATTTCATTCCACATATGCGCTCTACCCCAACCAACATCATC 60
consensus_2817#1      ------------------------------------------------------------
                                                                                  

consensus_2817#0      AGTCGTAGCCAGCATACCCACTCTTCACATCCAAGTCCAGAGCAGAGCATCAGGTGCAAA 120
consensus_2817#1      ------------------------------------------------------------
                                                                                  

consensus_2817#0      CACAAAACACAAAGCAGCAGCACGGGCCGGGTCAAAATCCAAAAGCACGCATGCACACAA 180
consensus_2817#1      -AAAACACAAAAGCCAGCAGCCACGGCGCGGTCAAAATCGAAAAGCACGCATGCAACCAA 59
                       * ** *** **  *******   ***  ********** ***************  ***

consensus_2817#0      ACGTGGGCACACCACCACGCAACACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCA 240
consensus_2817#1      ACGTGGGCACAC-ACGACGCAA-ACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCA 117
                      ************ ** ****** *************************************

consensus_2817#0      GCATGCACACACATTCAAACGCAGGCGTCATCATATGCACGCATGCACGGCGTTCAGTTG 300
consensus_2817#1      GCATGCAACCAATTCAACACGCAGGC-TCATCATATGCAC-------------------- 156
                      *******  **  *  * ******** *************                    

consensus_2817#0      CC 302
consensus_2817#1      --