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Oryza sativa
cluster # 2831 cluster # 2831       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2831#0 length = 695 sequences # 1  
consensus_2831#1 length = 618 sequences # 1  

consensusID : consensus_2831#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence
                              [TTTCCACCACCTGTTCCAGACAACCGGGAAACGCGCGCCGCCGAACCCGGGTTCCTCGCCATCACCCCGACGNCCAAGGGCGGCGCCGTCTTCGCCTCCGCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAATTCGTCGTGCCGCCGGGCGTCCTCACGAGGCCACGGCCGGGGCCGGGGCCCTGCCGCTGCCGTCCCCGCCGTTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATAAAAA]

[+] EMBL AU078013             [TTTCCACCACCTGTTCCAGACAACCGGGAAACGCGCGCCGCCGAACCCGGGTTCCTCGCCATCACCCCGACGNCCAAGGGCGGCGCCGTCTTCGCCTCCGCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAATTCGTCGTGCCGCCGGGCGTCCTCACGAGGCCACGGCCGGGGCCGGGGCCCTGCCGCTGCCGTCCCCGCCGTTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATAAAAA]


>consensus_2831#0 TTTCCACCACCTGTTCCAGACAACCGGGAAACGCGCGCCGCCGAACCCGGGTTCCTCGCC ATCACCCCGACGNCCAAGGGCGGCGCCGTCTTCGCCTCCGCGCGCCCGGCGCGCTGGTGA ACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCA GCAATTCGTCGTGCCGCCGGGCGTCCTCACGAGGCCACGGCCGGGGCCGGGGCCCTGCCG CTGCCGTCCCCGCCGTTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCG GTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCC GATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTG AAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTC GGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAA TCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAAC AGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGG AGAAAATAATTAGCAAAGCAAGAGTTAAATAAAAA



consensusID : consensus_2831#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence
                              [GACCACCGGGAACGCGCGCCGCCGCACCGGGTTCCTCGCCATCACCCCGACGGCCAAGGGCGGCGCCGTCTTCGCCTCCGCCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAACTTCGTCCTGCCGCTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATACTTG]

[+] EMBL AK109762             [GACCACCGGGAACGCGCGCCGCCGCACCGGGTTCCTCGCCATCACCCCGACGGCCAAGGGCGGCGCCGTCTTCGCCTCCGCCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAACTTCGTCCTGCCGCTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATACTTG]


>consensus_2831#1 GACCACCGGGAACGCGCGCCGCCGCACCGGGTTCCTCGCCATCACCCCGACGGCCAAGGG CGGCGCCGTCTTCGCCTCCGCCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGT GGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAACTTCGTCCTGCCGCT GCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAA GATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGA GGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTG GTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAA CTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTA CGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTG TCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAA GCAAGAGTTAAATACTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2831#0      TTTCCACCACCTGTTCCAGACAACCGGGAAACGCGCGCCGCCGAACCCGGGTTCCTCGCC 60
consensus_2831#1      ------------------GACCACCGGGAA-CGCGCGCCGCCGCACC-GGGTTCCTCGCC 40
                                        *** ******** ************ *** ************

consensus_2831#0      ATCACCCCGACGNCCAAGGGCGGCGCCGTCTTCGCCTCCGC-GCGCCCGGCGCGCTGGTG 119
consensus_2831#1      ATCACCCCGACGGCCAAGGGCGGCGCCGTCTTCGCCTCCGCCGCGCCCGGCGCGCTGGTG 100
                      ************ **************************** ******************

consensus_2831#0      AACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATC 179
consensus_2831#1      AACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATC 160
                      ************************************************************

consensus_2831#0      AGCAATTCGTCGTGCCGCCGGGCGTCCTCACGAGGCCACGGCCGGGGCCGGGGCCCTGCC 239
consensus_2831#1      AGCAACTT--------------CGTCCT-------------------------------- 174
                      ***** *               ******                                

consensus_2831#0      GCTGCCGTCCCCGCCGTTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCC 299
consensus_2831#1      ------------GCCGCTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCC 222
                                  **** *******************************************

consensus_2831#0      GGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGC 359
consensus_2831#1      GGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGC 282
                      ************************************************************

consensus_2831#0      CGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGT 419
consensus_2831#1      CGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGT 342
                      ************************************************************

consensus_2831#0      GAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTT 479
consensus_2831#1      GAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTT 402
                      ************************************************************

consensus_2831#0      CGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTA 539
consensus_2831#1      CGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTA 462
                      ************************************************************

consensus_2831#0      ATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAA 599
consensus_2831#1      ATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAA 522
                      ************************************************************

consensus_2831#0      CAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCG 659
consensus_2831#1      CAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCG 582
                      ************************************************************

consensus_2831#0      GAGAAAATAATTAGCAAAGCAAGAGTTAAATAAAAA 695
consensus_2831#1      GAGAAAATAATTAGCAAAGCAAGAGTTAAATACTTG 618
                      ********************************    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)