These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [TTTCCACCACCTGTTCCAGACAACCGGGAAACGCGCGCCGCCGAACCCGGGTTCCTCGCCATCACCCCGACGNCCAAGGGCGGCGCCGTCTTCGCCTCCGCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAATTCGTCGTGCCGCCGGGCGTCCTCACGAGGCCACGGCCGGGGCCGGGGCCCTGCCGCTGCCGTCCCCGCCGTTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATAAAAA] [+] EMBL AU078013 [TTTCCACCACCTGTTCCAGACAACCGGGAAACGCGCGCCGCCGAACCCGGGTTCCTCGCCATCACCCCGACGNCCAAGGGCGGCGCCGTCTTCGCCTCCGCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAATTCGTCGTGCCGCCGGGCGTCCTCACGAGGCCACGGCCGGGGCCGGGGCCCTGCCGCTGCCGTCCCCGCCGTTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATAAAAA] consensusID : consensus_2831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [GACCACCGGGAACGCGCGCCGCCGCACCGGGTTCCTCGCCATCACCCCGACGGCCAAGGGCGGCGCCGTCTTCGCCTCCGCCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAACTTCGTCCTGCCGCTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATACTTG] [+] EMBL AK109762 [GACCACCGGGAACGCGCGCCGCCGCACCGGGTTCCTCGCCATCACCCCGACGGCCAAGGGCGGCGCCGTCTTCGCCTCCGCCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAACTTCGTCCTGCCGCTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATACTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2831#0 TTTCCACCACCTGTTCCAGACAACCGGGAAACGCGCGCCGCCGAACCCGGGTTCCTCGCC 60 consensus_2831#1 ------------------GACCACCGGGAA-CGCGCGCCGCCGCACC-GGGTTCCTCGCC 40 *** ******** ************ *** ************ consensus_2831#0 ATCACCCCGACGNCCAAGGGCGGCGCCGTCTTCGCCTCCGC-GCGCCCGGCGCGCTGGTG 119 consensus_2831#1 ATCACCCCGACGGCCAAGGGCGGCGCCGTCTTCGCCTCCGCCGCGCCCGGCGCGCTGGTG 100 ************ **************************** ****************** consensus_2831#0 AACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATC 179 consensus_2831#1 AACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATC 160 ************************************************************ consensus_2831#0 AGCAATTCGTCGTGCCGCCGGGCGTCCTCACGAGGCCACGGCCGGGGCCGGGGCCCTGCC 239 consensus_2831#1 AGCAACTT--------------CGTCCT-------------------------------- 174 ***** * ****** consensus_2831#0 GCTGCCGTCCCCGCCGTTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCC 299 consensus_2831#1 ------------GCCGCTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCC 222 **** ******************************************* consensus_2831#0 GGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGC 359 consensus_2831#1 GGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGC 282 ************************************************************ consensus_2831#0 CGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGT 419 consensus_2831#1 CGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGT 342 ************************************************************ consensus_2831#0 GAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTT 479 consensus_2831#1 GAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTT 402 ************************************************************ consensus_2831#0 CGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTA 539 consensus_2831#1 CGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTA 462 ************************************************************ consensus_2831#0 ATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAA 599 consensus_2831#1 ATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAA 522 ************************************************************ consensus_2831#0 CAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCG 659 consensus_2831#1 CAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCG 582 ************************************************************ consensus_2831#0 GAGAAAATAATTAGCAAAGCAAGAGTTAAATAAAAA 695 consensus_2831#1 GAGAAAATAATTAGCAAAGCAAGAGTTAAATACTTG 618 ******************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||