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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[TTTCCACCACCTGTTCCAGACAACCGGGAAACGCGCGCCGCCGAACCCGGGTTCCTCGCCATCACCCCGACGNCCAAGGGCGGCGCCGTCTTCGCCTCCGCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAATTCGTCGTGCCGCCGGGCGTCCTCACGAGGCCACGGCCGGGGCCGGGGCCCTGCCGCTGCCGTCCCCGCCGTTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATAAAAA]
[+] EMBL AU078013 [TTTCCACCACCTGTTCCAGACAACCGGGAAACGCGCGCCGCCGAACCCGGGTTCCTCGCCATCACCCCGACGNCCAAGGGCGGCGCCGTCTTCGCCTCCGCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAATTCGTCGTGCCGCCGGGCGTCCTCACGAGGCCACGGCCGGGGCCGGGGCCCTGCCGCTGCCGTCCCCGCCGTTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATAAAAA]
consensusID : consensus_2831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[GACCACCGGGAACGCGCGCCGCCGCACCGGGTTCCTCGCCATCACCCCGACGGCCAAGGGCGGCGCCGTCTTCGCCTCCGCCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAACTTCGTCCTGCCGCTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATACTTG]
[+] EMBL AK109762 [GACCACCGGGAACGCGCGCCGCCGCACCGGGTTCCTCGCCATCACCCCGACGGCCAAGGGCGGCGCCGTCTTCGCCTCCGCCGCGCCCGGCGCGCTGGTGAACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATCAGCAACTTCGTCCTGCCGCTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCGGAGAAAATAATTAGCAAAGCAAGAGTTAAATACTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2831#0 TTTCCACCACCTGTTCCAGACAACCGGGAAACGCGCGCCGCCGAACCCGGGTTCCTCGCC 60
consensus_2831#1 ------------------GACCACCGGGAA-CGCGCGCCGCCGCACC-GGGTTCCTCGCC 40
*** ******** ************ *** ************
consensus_2831#0 ATCACCCCGACGNCCAAGGGCGGCGCCGTCTTCGCCTCCGC-GCGCCCGGCGCGCTGGTG 119
consensus_2831#1 ATCACCCCGACGGCCAAGGGCGGCGCCGTCTTCGCCTCCGCCGCGCCCGGCGCGCTGGTG 100
************ **************************** ******************
consensus_2831#0 AACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATC 179
consensus_2831#1 AACGCCACGCTCAAGAGGGTGGTCGCCGCCGTGCCGTACAACATCTCCGTGCTCCAGATC 160
************************************************************
consensus_2831#0 AGCAATTCGTCGTGCCGCCGGGCGTCCTCACGAGGCCACGGCCGGGGCCGGGGCCCTGCC 239
consensus_2831#1 AGCAACTT--------------CGTCCT-------------------------------- 174
***** * ******
consensus_2831#0 GCTGCCGTCCCCGCCGTTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCC 299
consensus_2831#1 ------------GCCGCTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCC 222
**** *******************************************
consensus_2831#0 GGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGC 359
consensus_2831#1 GGTGCCGGCCCCGACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGC 282
************************************************************
consensus_2831#0 CGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGT 419
consensus_2831#1 CGATGAGGACGGCGACGAGGCGCCGGCCGCCGCGCCGGCGCCGTCGCATGGCAACGCGGT 342
************************************************************
consensus_2831#0 GAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTT 479
consensus_2831#1 GAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCATGCGTGTT 402
************************************************************
consensus_2831#0 CGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTA 539
consensus_2831#1 CGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTA 462
************************************************************
consensus_2831#0 ATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAA 599
consensus_2831#1 ATCTACAGGTGCATCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAA 522
************************************************************
consensus_2831#0 CAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCG 659
consensus_2831#1 CAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTGTTGTGGAGTAGAGACTTGTAATCGCCG 582
************************************************************
consensus_2831#0 GAGAAAATAATTAGCAAAGCAAGAGTTAAATAAAAA 695
consensus_2831#1 GAGAAAATAATTAGCAAAGCAAGAGTTAAATACTTG 618
********************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||