cluster # 2833

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Oryza sativa
cluster # 2833 cluster # 2833 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2833#0 length = 332 sequences # 1

consensus_2833#1 length = 293 sequences # 1

consensusID : consensus_2833#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence

                              [CGGGCGCAGGCTGTCTGTGCTTTGTGTCGCATGATCGTGGTCGTCCGGTGCCCGGGATGGAGCAGGAGGGCACAGCACGGGGTCGGCTTGGCCGGCCATGGTGGCTCACGGGGGTAGCGGTTCAGCCGGGGCCAGGAAGGAGAAGGAAGCGGACGCACGACTACCTGCGGACAACCCCGCGCCTTGACGAGTCCTGCCAGCAAGCAAAACACGTAGCGGGAAACTTGTGGGGAAGTAGTGGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTGGCTTTGATATCAGTAGAGATTCCATCGAGGAACCCGTCATTTTGGCATCAAA]

[+] EMBL BI802178             [CGGGCGCAGGCTGTCTGTGCTTTGTGTCGCATGATCGTGGTCGTCCGGTGCCCGGGATGGAGCAGGAGGGCACAGCACGGGGTCGGCTTGGCCGGCCATGGTGGCTCACGGGGGTAGCGGTTCAGCCGGGGCCAGGAAGGAGAAGGAAGCGGACGCACGACTACCTGCGGACAACCCCGCGCCTTGACGAGTCCTGCCAGCAAGCAAAACACGTAGCGGGAAACTTGTGGGGAAGTAGTGGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTGGCTTTGATATCAGTAGAGATTCCATCGAGGAACCCGTCATTTTGGCATCAAA]




>consensus_2833#0
CGGGCGCAGGCTGTCTGTGCTTTGTGTCGCATGATCGTGGTCGTCCGGTGCCCGGGATGG
AGCAGGAGGGCACAGCACGGGGTCGGCTTGGCCGGCCATGGTGGCTCACGGGGGTAGCGG
TTCAGCCGGGGCCAGGAAGGAGAAGGAAGCGGACGCACGACTACCTGCGGACAACCCCGC
GCCTTGACGAGTCCTGCCAGCAAGCAAAACACGTAGCGGGAAACTTGTGGGGAAGTAGTG
GGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTGGCTTTGATATCAGTAGAGAT
TCCATCGAGGAACCCGTCATTTTGGCATCAAA

consensusID : consensus_2833#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [GACTACCTGCGACAACCCCGCGGCCTTGACGATCCCTTCCAGCAATGCAAACACGTAGCGTGAAACTTGTGGGGAAGTAGTGGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTTGCTTTGATATGCAGTAGAGATTCCATCGATGAATGCCGTCATTTTTGCATCTGTGCGAGGGTCTCCAGCTATAGTTTTTCTCTGCTTCCTCTGTGTTGCTCAGGTGGTTGTCTTGCTCGAGTGAATGTGTTGCTCAGGTGTTTGTTTTGCTCAAAAAAAAAAAAAAAAAAA]

[+] EMBL CB000005             [GACTACCTGCGACAACCCCGCGGCCTTGACGATCCCTTCCAGCAATGCAAACACGTAGCGTGAAACTTGTGGGGAAGTAGTGGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTTGCTTTGATATGCAGTAGAGATTCCATCGATGAATGCCGTCATTTTTGCATCTGTGCGAGGGTCTCCAGCTATAGTTTTTCTCTGCTTCCTCTGTGTTGCTCAGGTGGTTGTCTTGCTCGAGTGAATGTGTTGCTCAGGTGTTTGTTTTGCTCAAAAAAAAAAAAAAAAAAA]




>consensus_2833#1
GACTACCTGCGACAACCCCGCGGCCTTGACGATCCCTTCCAGCAATGCAAACACGTAGCG
TGAAACTTGTGGGGAAGTAGTGGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACT
TTGCTTTGATATGCAGTAGAGATTCCATCGATGAATGCCGTCATTTTTGCATCTGTGCGA
GGGTCTCCAGCTATAGTTTTTCTCTGCTTCCTCTGTGTTGCTCAGGTGGTTGTCTTGCTC
GAGTGAATGTGTTGCTCAGGTGTTTGTTTTGCTCAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2833#0      CGGGCGCAGGCTGTCTGTGCTTTGTGTCGCATGATCGTGGTCGTCCGGTGCCCGGGATGG 60
consensus_2833#1      ------------------------------------------------------------
                                                                                  

consensus_2833#0      AGCAGGAGGGCACAGCACGGGGTCGGCTTGGCCGGCCATGGTGGCTCACGGGGGTAGCGG 120
consensus_2833#1      ------------------------------------------------------------
                                                                                  

consensus_2833#0      TTCAGCCGGGGCCAGGAAGGAGAAGGAAGCGGACGCACGACTACCTGCGGACAACCCCGC 180
consensus_2833#1      --------------------------------------GACTACCTGCG-ACAACCCCGC 21
                                                            *********** **********

consensus_2833#0      G-CCTTGACGAGTCCTGCCAGCAAGCAAAACACGTAGCGGGAAACTTGTGGGGAAGTAGT 239
consensus_2833#1      GGCCTTGACGATCCCTTCCAGCAATGCAAACACGTAGCGTGAAACTTGTGGGGAAGTAGT 81
                      * *********  *** *******   ************ ********************

consensus_2833#0      GGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTGGCTTTGATAT-CAGTAGAG 298
consensus_2833#1      GGGAGGGATCAAATGCTTGATTGTGGGGGTATTTATACTTTGCTTTGATATGCAGTAGAG 141
                      **************************************** ********** ********

consensus_2833#0      ATTCCATCGAGGAAC-CCGTCATTTTGGCATCAAA------------------------- 332
consensus_2833#1      ATTCCATCGATGAATGCCGTCATTTTTGCATCTGTGCGAGGGTCTCCAGCTATAGTTTTT 201
                      ********** ***  ********** *****                            

consensus_2833#0      ------------------------------------------------------------
consensus_2833#1      CTCTGCTTCCTCTGTGTTGCTCAGGTGGTTGTCTTGCTCGAGTGAATGTGTTGCTCAGGT 261
                                                                                  

consensus_2833#0      --------------------------------
consensus_2833#1      GTTTGTTTTGCTCAAAAAAAAAAAAAAAAAAA 293