cluster # 284

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Oryza sativa
cluster # 284 cluster # 284 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_284#0 length = 460 sequences # 1

consensus_284#1 length = 161 sequences # 1

consensusID : consensus_284#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [TCCTTCCACAGCACCCACCACAAGTTATCATCCAGCACCAGGTCAACCAGACTGCCACCAACTCTAGGAATCACCTCCATTGCCTCCACATCCGGAAATCCAGCCAGTGAATTATATGCCTGGCGACACCCTGAGCAGAAGATCTTACCTGCTACAACTGTCAAGAGGGTCGTCATTCGTTCCGTCAAAGATTAACACGCAGAGCACGTCTCCGGTGTAACTCCAGCTAGTAGGACACCTGAAGGAACAAGTCAACCAGCGACAGAATTACGCGAAGCATTGCCAGTACCAGTTGAGACCTTTACTTATCAAGTACAGCAGCAGTCCACAAGTTTTCTAAATTTGTAGTACTCTTATTTGTACACTAGAAGTTTTATGCGCAGTTATGTAAGGTAAAAGGGAATGCTTGATTAAAGTATGAGTCAGGCTGTTTTTCTTTTCCTATGATTCAAAAAAAAAA]

[+] EMBL BI812304             [TCCTTCCACAGCACCCACCACAAGTTATCATCCAGCACCAGGTCAACCAGACTGCCACCAACTCTAGGAATCACCTCCATTGCCTCCACATCCGGAAATCCAGCCAGTGAATTATATGCCTGGCGACACCCTGAGCAGAAGATCTTACCTGCTACAACTGTCAAGAGGGTCGTCATTCGTTCCGTCAAAGATTAACACGCAGAGCACGTCTCCGGTGTAACTCCAGCTAGTAGGACACCTGAAGGAACAAGTCAACCAGCGACAGAATTACGCGAAGCATTGCCAGTACCAGTTGAGACCTTTACTTATCAAGTACAGCAGCAGTCCACAAGTTTTCTAAATTTGTAGTACTCTTATTTGTACACTAGAAGTTTTATGCGCAGTTATGTAAGGTAAAAGGGAATGCTTGATTAAAGTATGAGTCAGGCTGTTTTTCTTTTCCTATGATTCAAAAAAAAAA]




>consensus_284#0
TCCTTCCACAGCACCCACCACAAGTTATCATCCAGCACCAGGTCAACCAGACTGCCACCA
ACTCTAGGAATCACCTCCATTGCCTCCACATCCGGAAATCCAGCCAGTGAATTATATGCC
TGGCGACACCCTGAGCAGAAGATCTTACCTGCTACAACTGTCAAGAGGGTCGTCATTCGT
TCCGTCAAAGATTAACACGCAGAGCACGTCTCCGGTGTAACTCCAGCTAGTAGGACACCT
GAAGGAACAAGTCAACCAGCGACAGAATTACGCGAAGCATTGCCAGTACCAGTTGAGACC
TTTACTTATCAAGTACAGCAGCAGTCCACAAGTTTTCTAAATTTGTAGTACTCTTATTTG
TACACTAGAAGTTTTATGCGCAGTTATGTAAGGTAAAAGGGAATGCTTGATTAAAGTATG
AGTCAGGCTGTTTTTCTTTTCCTATGATTCAAAAAAAAAA

consensusID : consensus_284#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 161
fasta sequence

                              [AGAGGGTCGTCATTCGTTCCGTTCAGAAGAGTTAACACGCAGAGCAACGTTTCCGGTGAAACTCCAGCTAGTAGGAATCTGAAGGAACAAGTCAACCAGGACAGAATTACGGAAGCAATTGCAAGTACCAGGTTGAGACCTTTACTTATCAAGTACAGCAG]

[+] EMBL BI808475             [AGAGGGTCGTCATTCGTTCCGTTCAGAAGAGTTAACACGCAGAGCAACGTTTCCGGTGAAACTCCAGCTAGTAGGAATCTGAAGGAACAAGTCAACCAGGACAGAATTACGGAAGCAATTGCAAGTACCAGGTTGAGACCTTTACTTATCAAGTACAGCAG]




>consensus_284#1
AGAGGGTCGTCATTCGTTCCGTTCAGAAGAGTTAACACGCAGAGCAACGTTTCCGGTGAA
ACTCCAGCTAGTAGGAATCTGAAGGAACAAGTCAACCAGGACAGAATTACGGAAGCAATT
GCAAGTACCAGGTTGAGACCTTTACTTATCAAGTACAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_284#0      TCCTTCCACAGCACCCACCACAAGTTATCATCCAGCACCAGGTCAACCAGACTGCCACCA 60
consensus_284#1      ------------------------------------------------------------
                                                                                 

consensus_284#0      ACTCTAGGAATCACCTCCATTGCCTCCACATCCGGAAATCCAGCCAGTGAATTATATGCC 120
consensus_284#1      ------------------------------------------------------------
                                                                                 

consensus_284#0      TGGCGACACCCTGAGCAGAAGATCTTACCTGCTACAACTGTCAAGAGGGTCGTCATTCGT 180
consensus_284#1      -------------------------------------------AGAGGGTCGTCATTCGT 17
                                                                *****************

consensus_284#0      TCCGTC---AAAGATTAACACGCAGAGCA-CGTCTCCGGTGTAACTCCAGCTAGTAGGAC 236
consensus_284#1      TCCGTTCAGAAGAGTTAACACGCAGAGCAACGTTTCCGGTGAAACTCCAGCTAGTAGGA- 76
                     *****    **   *************** *** ******* ***************** 

consensus_284#0      ACCTGAAGGAACAAGTCAACCAGCGACAGAATTACGCGAAGCATTGCCAGTACCAG-TTG 295
consensus_284#1      ATCTGAAGGAACAAGTCAACCAG-GACAGAATTACGGAAGCAATTGCAAGTACCAGGTTG 135
                     * ********************* ************  *   ***** ******** ***

consensus_284#0      AGACCTTTACTTATCAAGTACAGCAGCAGTCCACAAGTTTTCTAAATTTGTAGTACTCTT 355
consensus_284#1      AGACCTTTACTTATCAAGTACAGCAG---------------------------------- 161
                     **************************                                  

consensus_284#0      ATTTGTACACTAGAAGTTTTATGCGCAGTTATGTAAGGTAAAAGGGAATGCTTGATTAAA 415
consensus_284#1      ------------------------------------------------------------
                                                                                 

consensus_284#0      GTATGAGTCAGGCTGTTTTTCTTTTCCTATGATTCAAAAAAAAAA 460
consensus_284#1      ---------------------------------------------