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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1501 fasta sequence
[GGGCGAGCCGGCGATCGCGCGCGCGGCGGCGGCGGCGGCGGAGGAGGAAGAGGAGGAGTGGGCGACGCGACGCGACGCCGCGCCGCGCGGCCGTGTGCTCTACCTGGACGTACGAGGGAGGGGGGCCGAGCCGAGAGACCAGCTTGGCCGCGGTGCGATCGCGGGCGGCAGTCGTACGTGCGTGCAGCGGCGGCGGCGGCTCTGTGCCTACCGTCGGCGGGGCGGCAGGGCGTCGGAGCTGCCTCTGTTTTGATGATAAAAGTGAGAATGCCTGGAAGTCTCGAGTTGGTGTGCTTTATGTGATGCACCCGATAACATTTTTCACCAATATCATTGGTGTGGTGACCATTGTTCTGATCTCCATCGTCTCCATCTTGGGCCTTATTTGCCTGTGCCACTCACTGAACTTCCAATTGTTGATCAAACGGAGGAGGAGAAATTACTACCAAGCGAATGACGAGCAGCTTAGCTACTTCAATGGGCCATGGCTGACTCGCATAACATTAATACTGGTTGCACTATGGTGGGGTGTTGGAGATGTGTTGCGGCTCACATTTGTCAATGGGGAGGGGAGGTTCATTTCTGATCAGACATGGCAAGCCAATGTATGCAAATTTTACATCGTCTCAAATTTGGGGTTTGCAGAACCAGGGTTGTTCCTGTTGCTAGCTTTCCTTCTTAGTGCAGCATTGCAAAATCAAGAGGTTGGTGCCTTAAATCGTAAATGGAACCAGAGGACCATATGTGCAGTGTTTATGCTCTGCTCACCCTCACTCATATGGGAAGCTTGTGTAGTTTTTATTGGTCCTCATATTGCTTCAAACGATGGACAGACATCAAAGGTTGCAAAGTATTGGTATTCAGCCTCTTCAGTCCATGATGGCGATGTTGCATGCACATACCCATTGTTGAGCAGCATATTTCTTGGGACGTTCTACACCGTGTTAACTCTTTATGTCATATTTGTTGGAGGGCAGATATTATCTTTAGTGATCAACAAGGGGCTTCGACGGAGGATATATATGCTAATTTTTGCCACCGGAATACTGCTTCCTCGAGCTATGTTTCTTGGATTCTCGGTTCTTCCATGGCCAGGTGAAATAGTCCATGAATCTCTCGTGTTTGTCTCCTTCCTTGTCCTGATGATTGCTGCTATGCTTGGTATTGTTATTCTGGTGTATTTCCCAGTTGCGGAAACCTTTGAAGTAAGAAACCAAGAGCATATTGAGCTGCAAACAAGTCATTCCATTGCCCTGTGAATCTTTGATGGCTGAGCCTTATGATTTGACATATGTTTCAGCTTTTCATTCTAAGGACAAGACATTGGGAGATGCTTCAGATTTATTATGTGGTTGTTGCTGAGAGCTATCTCCCCAATTTTGTAAACATAGAACAAATTAGATTAGGTTATCGTTCTCCTTTCTTTTCTTCATGCATGTCGCCATGAACAGAAGTTATACCCTGTACAATAGTTTCTATAGGCTAGTGAAATGACCAGGCA]
[+] EMBL AK073841 [GGGCGAGCCGGCGATCGCGCGCGCGGCGGCGGCGGCGGCGGAGGAGGAAGAGGAGGAGTGGGCGACGCGACGCGACGCCGCGCCGCGCGGCCGTGTGCTCTACCTGGACGTACGAGGGAGGGGGGCCGAGCCGAGAGACCAGCTTGGCCGCGGTGCGATCGCGGGCGGCAGTCGTACGTGCGTGCAGCGGCGGCGGCGGCTCTGTGCCTACCGTCGGCGGGGCGGCAGGGCGTCGGAGCTGCCTCTGTTTTGATGATAAAAGTGAGAATGCCTGGAAGTCTCGAGTTGGTGTGCTTTATGTGATGCACCCGATAACATTTTTCACCAATATCATTGGTGTGGTGACCATTGTTCTGATCTCCATCGTCTCCATCTTGGGCCTTATTTGCCTGTGCCACTCACTGAACTTCCAATTGTTGATCAAACGGAGGAGGAGAAATTACTACCAAGCGAATGACGAGCAGCTTAGCTACTTCAATGGGCCATGGCTGACTCGCATAACATTAATACTGGTTGCACTATGGTGGGGTGTTGGAGATGTGTTGCGGCTCACATTTGTCAATGGGGAGGGGAGGTTCATTTCTGATCAGACATGGCAAGCCAATGTATGCAAATTTTACATCGTCTCAAATTTGGGGTTTGCAGAACCAGGGTTGTTCCTGTTGCTAGCTTTCCTTCTTAGTGCAGCATTGCAAAATCAAGAGGTTGGTGCCTTAAATCGTAAATGGAACCAGAGGACCATATGTGCAGTGTTTATGCTCTGCTCACCCTCACTCATATGGGAAGCTTGTGTAGTTTTTATTGGTCCTCATATTGCTTCAAACGATGGACAGACATCAAAGGTTGCAAAGTATTGGTATTCAGCCTCTTCAGTCCATGATGGCGATGTTGCATGCACATACCCATTGTTGAGCAGCATATTTCTTGGGACGTTCTACACCGTGTTAACTCTTTATGTCATATTTGTTGGAGGGCAGATATTATCTTTAGTGATCAACAAGGGGCTTCGACGGAGGATATATATGCTAATTTTTGCCACCGGAATACTGCTTCCTCGAGCTATGTTTCTTGGATTCTCGGTTCTTCCATGGCCAGGTGAAATAGTCCATGAATCTCTCGTGTTTGTCTCCTTCCTTGTCCTGATGATTGCTGCTATGCTTGGTATTGTTATTCTGGTGTATTTCCCAGTTGCGGAAACCTTTGAAGTAAGAAACCAAGAGCATATTGAGCTGCAAACAAGTCATTCCATTGCCCTGTGAATCTTTGATGGCTGAGCCTTATGATTTGACATATGTTTCAGCTTTTCATTCTAAGGACAAGACATTGGGAGATGCTTCAGATTTATTATGTGGTTGTTGCTGAGAGCTATCTCCCCAATTTTGTAAACATAGAACAAATTAGATTAGGTTATCGTTCTCCTTTCTTTTCTTCATGCATGTCGCCATGAACAGAAGTTATACCCTGTACAATAGTTTCTATAGGCTAGTGAAATGACCAGGCA]
consensusID : consensus_2848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[CGACGCTGATGTTTGCTTGGGGATTGGTGCGGTTGCTTGCCATGGGCCAGGTGGAAAATGATCCATGGAATGCTGCTTGCGTGTNTTTGCTGCCTTGCCTTTGGTGCCTGGGATGGGATNGGCTGGCTGATGGCTTGGTGATTGGTTGATTGCTGGGTGGTGATTGTGCACACAAGTGTGCGGAAACCCTGTTGGAAAGGTGAAGAAAACCCAAGGAGCTATGATTGGAGCCTGGCAACAAAGTGCATTGCACTTGGCCCTGGTGGAATGCTGTTTGGATGGGGCTGGAGCCTTTGATGGATGTTGGACATGATGGTNTTGCTAGCTGTGTTGCATTGCTGAAGGACATAGGACATTGGGGAGATGGCTGTGCAGATGTGTGATTGATGGTGGGTTGGTTGGCTGGAGAGCTGATGCTGCCCCCAATGTGTTGGTGAATACATGAGGAACAATTGAGGATTGAGGGTTGATGCAGTTGCTGCCTTTGCTTTNCTTCATGCATGTCGCCATGAACGAAGTTATACCCTGTACATAGTTTCTATAGGCTAGNGAAATGACCAGGCATACTTTACCNANNATATGGCGTAGTGCATTCGAGAAAAAAAACTNAATAATAAAAAA]
[+] EMBL BI806140 [CGACGCTGATGTTTGCTTGGGGATTGGTGCGGTTGCTTGCCATGGGCCAGGTGGAAAATGATCCATGGAATGCTGCTTGCGTGTNTTTGCTGCCTTGCCTTTGGTGCCTGGGATGGGATNGGCTGGCTGATGGCTTGGTGATTGGTTGATTGCTGGGTGGTGATTGTGCACACAAGTGTGCGGAAACCCTGTTGGAAAGGTGAAGAAAACCCAAGGAGCTATGATTGGAGCCTGGCAACAAAGTGCATTGCACTTGGCCCTGGTGGAATGCTGTTTGGATGGGGCTGGAGCCTTTGATGGATGTTGGACATGATGGTNTTGCTAGCTGTGTTGCATTGCTGAAGGACATAGGACATTGGGGAGATGGCTGTGCAGATGTGTGATTGATGGTGGGTTGGTTGGCTGGAGAGCTGATGCTGCCCCCAATGTGTTGGTGAATACATGAGGAACAATTGAGGATTGAGGGTTGATGCAGTTGCTGCCTTTGCTTTNCTTCATGCATGTCGCCATGAACGAAGTTATACCCTGTACATAGTTTCTATAGGCTAGNGAAATGACCAGGCATACTTTACCNANNATATGGCGTAGTGCATTCGAGAAAAAAAACTNAATAATAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2848#0 GGGCGAGCCGGCGATCGCGCGCGCGGCGGCGGCGGCGGCGGAGGAGGAAGAGGAGGAGTG 60
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 GGCGACGCGACGCGACGCCGCGCCGCGCGGCCGTGTGCTCTACCTGGACGTACGAGGGAG 120
consensus_2848#1 -------CGACGCTGATGTTTGCTTGGGGATTG-GTGCGGTTGCTTGCCATGGGCCAGGT 52
****** ** * * * **** * ** * * * * *
consensus_2848#0 GGGGGCCGAGCCGAGAGACCAGCTTGGCCGCGGTGCGATCGCGGGCGGCAGTCGTACGTG 180
consensus_2848#1 GGAAAATGATCCATGGAATG---CTGCTTGCG-TGTNTTTGCTGCC--TTGCCTTTGGTG 106
** ** ** * * ** *** ** * ** * * * * * ***
consensus_2848#0 CGTGCAGCGGCGGCGGC-GGCTCTGTGCCTACCGTCGGCGGGGCGGCAGGGCGTCGGAGC 239
consensus_2848#1 CCTGGGATGGGATNGGCTGGCTGATGGCTTGGTGATTGGTTGATTGCTGGGTGGTGATTG 166
* ** ** *** **** ** * * * * ** *** * *
consensus_2848#0 TGCCTCTGTTTTGATGATAAA---AGTGAGAATGCCTGGAAGTCTCGAGTTGGTGTGCTT 296
consensus_2848#1 TGCACACAAGTGTGCGGAAACCCTGTTGGAAAGGTGAAGAAAACCCAAGGAGCTATGATT 226
*** * * ** ** ** * *** * * ** * * ** **
consensus_2848#0 TATGTGATGCACCCGATAACATTTTTCACCAATATCATTGGTGTGGTGACCATTGTTCTG 356
consensus_2848#1 GGAGCCTGGCAAC--AAAGTGCATTGCACT--TGGCCCTGGTG----GAATGCTGTTTGG 278
* *** * * * ** *** * * ***** ** **** *
consensus_2848#0 ATCTCCATCGTCTCCATCTTGGGCCTTATTTGCCTGTGCCACTCACTGAACTTCCAATTG 416
consensus_2848#1 ATGG-----------GGCTGGAGCCTTTGATGGATGTTGGACATGATGGTNTTGCTAGCT 327
** ** * ***** ** *** ** ** ** * *
consensus_2848#0 TTGATCAAACGGAGGAGGAGAAATTACTACCAAGCGAATGACGAGCAGCTTAGCTACTT- 475
consensus_2848#1 GTGTTGCATTGCTGAAGGACATAGGACATTGGGGAGATGGCTGTGCAGATGTGTGATTGA 387
** * * * * **** * * ** * ** * * **** * * * *
consensus_2848#0 CAATGGGCCATGGCTGACTCGCATAACATTAATACTGGTTGCACTATGGTGGGGTGT--- 532
consensus_2848#1 TGGTGGGT--TGGTTGGCTGG---AGAGCTGATGCTGCCCCCAATGTGTTGGTGAATACA 442
**** *** ** ** * * * ** *** ** * ** *** * *
consensus_2848#0 TGGAGATGTGTTGCGGCTCACATTTGTCAATGGGGAGGGGAGGTTCATTTCTGATCAGAC 592
consensus_2848#1 TGAGGAACAATTGAGGATTGAG--GGTTGATGCAGTTGCTGCCTTTGCTTTNCTTCATGC 500
** ** *** ** * ** *** * * ** ** *** *
consensus_2848#0 ATGGCAAGCCAATGTATGCAAATTTTACATCGTCTCAAATTTGGGGTTTGCAGAACCAGG 652
consensus_2848#1 ATGTCG---CCATGAACG-AAGTTATACCCTGT-----ACATAGTTTCTATAGG-CTAGN 550
*** * * *** * * ** ** *** ** * * * * * ** * **
consensus_2848#0 GTTGTTCCTGTTGCTAGCTTTCCTTCTTAGTGCAGCATTGCAAAATCAAGAGGTTGGTGC 712
consensus_2848#1 GAAATGACCAG-GCATACTTTACCNANNA-TATGGCGTAGTGCATTCGAGAAA---AAAA 605
* * * ** **** * * * ** * * * ** ***
consensus_2848#0 CTTAAATCGTAAATGGAACCAGAGGACCATATGTGCAGTGTTTATGCTCTGCTCACCCTC 772
consensus_2848#1 ACTNAATAATAAAAAA-------------------------------------------- 621
* *** ****
consensus_2848#0 ACTCATATGGGAAGCTTGTGTAGTTTTTATTGGTCCTCATATTGCTTCAAACGATGGACA 832
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 GACATCAAAGGTTGCAAAGTATTGGTATTCAGCCTCTTCAGTCCATGATGGCGATGTTGC 892
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 ATGCACATACCCATTGTTGAGCAGCATATTTCTTGGGACGTTCTACACCGTGTTAACTCT 952
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 TTATGTCATATTTGTTGGAGGGCAGATATTATCTTTAGTGATCAACAAGGGGCTTCGACG 1012
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 GAGGATATATATGCTAATTTTTGCCACCGGAATACTGCTTCCTCGAGCTATGTTTCTTGG 1072
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 ATTCTCGGTTCTTCCATGGCCAGGTGAAATAGTCCATGAATCTCTCGTGTTTGTCTCCTT 1132
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 CCTTGTCCTGATGATTGCTGCTATGCTTGGTATTGTTATTCTGGTGTATTTCCCAGTTGC 1192
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 GGAAACCTTTGAAGTAAGAAACCAAGAGCATATTGAGCTGCAAACAAGTCATTCCATTGC 1252
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 CCTGTGAATCTTTGATGGCTGAGCCTTATGATTTGACATATGTTTCAGCTTTTCATTCTA 1312
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 AGGACAAGACATTGGGAGATGCTTCAGATTTATTATGTGGTTGTTGCTGAGAGCTATCTC 1372
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 CCCAATTTTGTAAACATAGAACAAATTAGATTAGGTTATCGTTCTCCTTTCTTTTCTTCA 1432
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 TGCATGTCGCCATGAACAGAAGTTATACCCTGTACAATAGTTTCTATAGGCTAGTGAAAT 1492
consensus_2848#1 ------------------------------------------------------------
consensus_2848#0 GACCAGGCA 1501
consensus_2848#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||