cluster # 286

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Oryza sativa
cluster # 286 cluster # 286 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_286#0 length = 763 sequences # 1

consensus_286#1 length = 694 sequences # 1

consensusID : consensus_286#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 763
fasta sequence

                              [ACGAGACAAGGGGGAACATCACAACATCTGCAACCAGTCTAGGTCTTCCCAGCCTCCAGGCTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCAGCAGGCTTTGGCTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCGTCTTAATGATGCTCTACCCGCGAGCGGGCAACCAACCCCAAGGTTGCTTGCTGGGTCGACTCGACGTATTTTCGCCTGCTTAACCTCGGACCCGTCCCGCTCTGCATAATGCCCGTACTATCAAATATCGGATTTCCATGACGGACCACCCATCGAATCCAGACAAAGCACCCTCTTGATCCTCGGGCTTCCGCATCCAGCGCCTTGGCTACAAGAGCAGGGAATTTGACTGGTAATCAGTGAGAAGGCATTCTGCTCTTCTGATATGGACTCCTCATGCGTAAGTTACCAGTCTTGCTTCGTGGTCTACTCCTGGAAGGGGGCCATTTCGGGCGAATCCCACCTGCGGGTCTATCAGCACCATTGTGGAAAATGTGAGTGGGGGGCACAAGGCTTACCGGTAATGCTTGCCGCTGAGATCCGTCGTCGCGCCAGCGACCCGGTTGGCGATAACGGTTCCTGGCTGCTCGGGTTTGAGCAACTTGCCCTCATTGTGCTCATCTATGAAGCTTTGGTGGTCTGTGGCCTTCATGGAGCTGCCACCGAGTTCTCTGATCTGCTGCTGCATAGCTGNTGCGACTTT]

[+] EMBL CA766790             [ACGAGACAAGGGGGAACATCACAACATCTGCAACCAGTCTAGGTCTTCCCAGCCTCCAGGCTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCAGCAGGCTTTGGCTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCGTCTTAATGATGCTCTACCCGCGAGCGGGCAACCAACCCCAAGGTTGCTTGCTGGGTCGACTCGACGTATTTTCGCCTGCTTAACCTCGGACCCGTCCCGCTCTGCATAATGCCCGTACTATCAAATATCGGATTTCCATGACGGACCACCCATCGAATCCAGACAAAGCACCCTCTTGATCCTCGGGCTTCCGCATCCAGCGCCTTGGCTACAAGAGCAGGGAATTTGACTGGTAATCAGTGAGAAGGCATTCTGCTCTTCTGATATGGACTCCTCATGCGTAAGTTACCAGTCTTGCTTCGTGGTCTACTCCTGGAAGGGGGCCATTTCGGGCGAATCCCACCTGCGGGTCTATCAGCACCATTGTGGAAAATGTGAGTGGGGGGCACAAGGCTTACCGGTAATGCTTGCCGCTGAGATCCGTCGTCGCGCCAGCGACCCGGTTGGCGATAACGGTTCCTGGCTGCTCGGGTTTGAGCAACTTGCCCTCATTGTGCTCATCTATGAAGCTTTGGTGGTCTGTGGCCTTCATGGAGCTGCCACCGAGTTCTCTGATCTGCTGCTGCATAGCTGNTGCGACTTT]




>consensus_286#0
ACGAGACAAGGGGGAACATCACAACATCTGCAACCAGTCTAGGTCTTCCCAGCCTCCAGG
CTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCA
GCAGGCTTTGGCTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCG
TCTTAATGATGCTCTACCCGCGAGCGGGCAACCAACCCCAAGGTTGCTTGCTGGGTCGAC
TCGACGTATTTTCGCCTGCTTAACCTCGGACCCGTCCCGCTCTGCATAATGCCCGTACTA
TCAAATATCGGATTTCCATGACGGACCACCCATCGAATCCAGACAAAGCACCCTCTTGAT
CCTCGGGCTTCCGCATCCAGCGCCTTGGCTACAAGAGCAGGGAATTTGACTGGTAATCAG
TGAGAAGGCATTCTGCTCTTCTGATATGGACTCCTCATGCGTAAGTTACCAGTCTTGCTT
CGTGGTCTACTCCTGGAAGGGGGCCATTTCGGGCGAATCCCACCTGCGGGTCTATCAGCA
CCATTGTGGAAAATGTGAGTGGGGGGCACAAGGCTTACCGGTAATGCTTGCCGCTGAGAT
CCGTCGTCGCGCCAGCGACCCGGTTGGCGATAACGGTTCCTGGCTGCTCGGGTTTGAGCA
ACTTGCCCTCATTGTGCTCATCTATGAAGCTTTGGTGGTCTGTGGCCTTCATGGAGCTGC
CACCGAGTTCTCTGATCTGCTGCTGCATAGCTGNTGCGACTTT

consensusID : consensus_286#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [AACCGTTTAGGTCTTCCCAGCCTCCAGGCTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCAGCAGGCTTTGGNTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCGTTTTAATGATGCTCTACCCGCGAGCGGGCAACCAAACCCCAAGGTTGCCTGCTGGGTCGACTTGACGTATTTTTGCCTGCTTAACCTTGGACCCGTCCCGCTTTGCATAATGCCCGTACTATCAAATATTGGATTTCCATGACGGGCCCCCCATTGAATCCAGACAAAGCCCCCTCTTGATTCTCGGGGTTTCGCATCCAGCGCCTTGGGTACAAGAGCAGGGAATTTGGCTGGTTATCAGTGAGAAGGCCTTTTGCTTTTTTGATATGGACTCCTCCTGCGTAAGTTACCCGTCCTGGTTCGTGGTTTACTCCCGGAAGGGGGCCCTTTCGGGCGAATTCCCCCTGCGGGTCTATTAGCCCCATTGTGGAAAATTTGAGTGGGGGGCCCAAGGCTTACCGGTAATGCTTGCCCCTTAGATCCGTTGTCGCGCCAACGACCAGGTTGGCGATAACGGTTTCTGGCTGCTCGGGTTTGAGCAACTTGCCCTCATTGTGCTTATCTATGAAGCTTTGGTGGTCTGTGAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760546             [AACCGTTTAGGTCTTCCCAGCCTCCAGGCTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCAGCAGGCTTTGGNTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCGTTTTAATGATGCTCTACCCGCGAGCGGGCAACCAAACCCCAAGGTTGCCTGCTGGGTCGACTTGACGTATTTTTGCCTGCTTAACCTTGGACCCGTCCCGCTTTGCATAATGCCCGTACTATCAAATATTGGATTTCCATGACGGGCCCCCCATTGAATCCAGACAAAGCCCCCTCTTGATTCTCGGGGTTTCGCATCCAGCGCCTTGGGTACAAGAGCAGGGAATTTGGCTGGTTATCAGTGAGAAGGCCTTTTGCTTTTTTGATATGGACTCCTCCTGCGTAAGTTACCCGTCCTGGTTCGTGGTTTACTCCCGGAAGGGGGCCCTTTCGGGCGAATTCCCCCTGCGGGTCTATTAGCCCCATTGTGGAAAATTTGAGTGGGGGGCCCAAGGCTTACCGGTAATGCTTGCCCCTTAGATCCGTTGTCGCGCCAACGACCAGGTTGGCGATAACGGTTTCTGGCTGCTCGGGTTTGAGCAACTTGCCCTCATTGTGCTTATCTATGAAGCTTTGGTGGTCTGTGAAAAAAAAAAAAAAAAAAAAA]




>consensus_286#1
AACCGTTTAGGTCTTCCCAGCCTCCAGGCTCGCCACGCGTGGGTTCCGGCTGGTCTCTTG
ACAGTTTGACTGCGAGAAACCTCTGCCAGCAGGCTTTGGNTGCTGCCTGGAACCGGTCAA
CATGCAATGTTCCGTGCCCCTCATCGCGTTTTAATGATGCTCTACCCGCGAGCGGGCAAC
CAAACCCCAAGGTTGCCTGCTGGGTCGACTTGACGTATTTTTGCCTGCTTAACCTTGGAC
CCGTCCCGCTTTGCATAATGCCCGTACTATCAAATATTGGATTTCCATGACGGGCCCCCC
ATTGAATCCAGACAAAGCCCCCTCTTGATTCTCGGGGTTTCGCATCCAGCGCCTTGGGTA
CAAGAGCAGGGAATTTGGCTGGTTATCAGTGAGAAGGCCTTTTGCTTTTTTGATATGGAC
TCCTCCTGCGTAAGTTACCCGTCCTGGTTCGTGGTTTACTCCCGGAAGGGGGCCCTTTCG
GGCGAATTCCCCCTGCGGGTCTATTAGCCCCATTGTGGAAAATTTGAGTGGGGGGCCCAA
GGCTTACCGGTAATGCTTGCCCCTTAGATCCGTTGTCGCGCCAACGACCAGGTTGGCGAT
AACGGTTTCTGGCTGCTCGGGTTTGAGCAACTTGCCCTCATTGTGCTTATCTATGAAGCT
TTGGTGGTCTGTGAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_286#0      ACGAGACAAGGGGGAACATCACAACATCTGCAACCAGTCTAGGTCTTCCCAGCCTCCAGG 60
consensus_286#1      -------------------------------AACC-GTTTAGGTCTTCCCAGCCTCCAGG 28
                                                    **** ** *********************

consensus_286#0      CTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCA 120
consensus_286#1      CTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCA 88
                     ************************************************************

consensus_286#0      GCAGGCTTTGGCTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCG 180
consensus_286#1      GCAGGCTTTGGNTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCG 148
                     *********** ************************************************

consensus_286#0      TCTTAATGATGCTCTACCCGCGAGCGGGCAACCAA-CCCCAAGGTTGCTTGCTGGGTCGA 239
consensus_286#1      TTTTAATGATGCTCTACCCGCGAGCGGGCAACCAAACCCCAAGGTTGCCTGCTGGGTCGA 208
                     * ********************************* ************ ***********

consensus_286#0      CTCGACGTATTTTCGCCTGCTTAACCTCGGACCCGTCCCGCTCTGCATAATGCCCGTACT 299
consensus_286#1      CTTGACGTATTTTTGCCTGCTTAACCTTGGACCCGTCCCGCTTTGCATAATGCCCGTACT 268
                     ** ********** ************* ************** *****************

consensus_286#0      ATCAAATATCGGATTTCCATGACGGACCACCCATCGAATCCAGACAAAGCACCCTCTTGA 359
consensus_286#1      ATCAAATATTGGATTTCCATGACGGGCCCCCCATTGAATCCAGACAAAGCCCCCTCTTGA 328
                     ********* *************** ** ***** *************** *********

consensus_286#0      TCCTCGGGCTTCCGCATCCAGCGCCTTGGCTACAAGAGCAGGGAATTTGACTGGTAATCA 419
consensus_286#1      TTCTCGGGGTTTCGCATCCAGCGCCTTGGGTACAAGAGCAGGGAATTTGGCTGGTTATCA 388
                     * ****** ** ***************** ******************* ***** ****

consensus_286#0      GTGAGAAGGCATTCTGCTCTTCTGATATGGACTCCTCATGCGTAAGTTACCAGTCTTGCT 479
consensus_286#1      GTGAGAAGGCCTTTTGCTTTTTTGATATGGACTCCTCCTGCGTAAGTTACCCGTCCTGGT 448
                     ********** ** **** ** *************** ************* *** ** *

consensus_286#0      TCGTGGTCTACTCCTGGAAGGGGGCCATTTCGGGCGAATCCCACCTGCGGGTCTATCAGC 539
consensus_286#1      TCGTGGTTTACTCCCGGAAGGGGGCCCTTTCGGGCGAATTCCCCCTGCGGGTCTATTAGC 508
                     ******* ****** *********** ************ ** ************* ***

consensus_286#0      ACCATTGTGGAAAATGTGAGTGGGGGGCACAAGGCTTACCGGTAATGCTTGCCGCTGAGA 599
consensus_286#1      CCCATTGTGGAAAATTTGAGTGGGGGGCCCAAGGCTTACCGGTAATGCTTGCCCCTTAGA 568
                      ************** ************ ************************ ** ***

consensus_286#0      TCCGTCGTCGCGCCAGCGACCCGGTTGGCGATAACGGTTCCTGGCTGCTCGGGTTTGAGC 659
consensus_286#1      TCCGTTGTCGCGCCAACGACCAGGTTGGCGATAACGGTTTCTGGCTGCTCGGGTTTGAGC 628
                     ***** ********* ***** ***************** ********************

consensus_286#0      AACTTGCCCTCATTGTGCTCATCTATGAAGCTTTGGTGGTCTGTGGCCTTCATGGAGCTG 719
consensus_286#1      AACTTGCCCTCATTGTGCTTATCTATGAAGCTTTGGTGGTCTGTGAAAAAAAAAAAAAAA 688
                     ******************* *************************      *   *    

consensus_286#0      CCACCGAGTTCTCTGATCTGCTGCTGCATAGCTGNTGCGACTTT 763
consensus_286#1      AAAAAA-------------------------------------- 694
                       *