cluster # 2868

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Oryza sativa
cluster # 2868 cluster # 2868 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2868#0 length = 886 sequences # 1

consensus_2868#1 length = 838 sequences # 1

consensusID : consensus_2868#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 886
fasta sequence

                              [CAAGGAGAAGTGTAAGTTTTGAGGTGAATCGAAGTAATCTGGTCAGGATTTCACACTACGGCTTGGAGTTGGGTCGGTGTTGTTTGAGTCACCTTACTCCATAGATGCCACTTCTATCTTAGAGAAAAGGCTTCCTCTCTTATCAGAAGTGATAGCAGGGCCGTGATGACAGGAGAATTTTTTAGCTTGGGTTGCTCACTTGCTCTAGCCTCGATGGGAGAGTGCACTGCGTAACATCACCAGTATGCCTTTTCCCCAGGTCAAGTTGGTGGCAGAACAGAGATTAGGGCTGCAATGAGTGCATAAAGAAGATTTTCTCAAATCAAATTGGTTACACAACAATGTTAATGTAGGGCAGATTCTTTTAATTAAAGGCACTTATTCGGTTACCTGTTATTTGTTCAAATAAAATCTCAAGAACTGGCTGTTGTTCACGTTTGGAAGAATGCTAAGTTTTTGTTCATCGTCTGTTTCTCCGGAATAGTAACTACAATTTTGGACTCTTTGCCTTCGCAGGGATCAGATTGTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAGATTTTGGAAGAAGAGGAGGATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGNTAGAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGGGGGGGGTTTGGCTGATACACTGATACAGGCATTCCTNCANCAGTCGACACACAACATCACCTTGGTTCTTCTACGAGNGCTTNCGTANTANATCAATTGGTTTTGAGANNGGNGGGACATAAATTTGAGTCAGCAATGGAAGCGTCCAAGACACTTTCGGCGGGAAANAAGTAGTATTTTCCNCAATT]

[+] EMBL CA764327             [CAAGGAGAAGTGTAAGTTTTGAGGTGAATCGAAGTAATCTGGTCAGGATTTCACACTACGGCTTGGAGTTGGGTCGGTGTTGTTTGAGTCACCTTACTCCATAGATGCCACTTCTATCTTAGAGAAAAGGCTTCCTCTCTTATCAGAAGTGATAGCAGGGCCGTGATGACAGGAGAATTTTTTAGCTTGGGTTGCTCACTTGCTCTAGCCTCGATGGGAGAGTGCACTGCGTAACATCACCAGTATGCCTTTTCCCCAGGTCAAGTTGGTGGCAGAACAGAGATTAGGGCTGCAATGAGTGCATAAAGAAGATTTTCTCAAATCAAATTGGTTACACAACAATGTTAATGTAGGGCAGATTCTTTTAATTAAAGGCACTTATTCGGTTACCTGTTATTTGTTCAAATAAAATCTCAAGAACTGGCTGTTGTTCACGTTTGGAAGAATGCTAAGTTTTTGTTCATCGTCTGTTTCTCCGGAATAGTAACTACAATTTTGGACTCTTTGCCTTCGCAGGGATCAGATTGTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAGATTTTGGAAGAAGAGGAGGATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGNTAGAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGGGGGGGGTTTGGCTGATACACTGATACAGGCATTCCTNCANCAGTCGACACACAACATCACCTTGGTTCTTCTACGAGNGCTTNCGTANTANATCAATTGGTTTTGAGANNGGNGGGACATAAATTTGAGTCAGCAATGGAAGCGTCCAAGACACTTTCGGCGGGAAANAAGTAGTATTTTCCNCAATT]




>consensus_2868#0
CAAGGAGAAGTGTAAGTTTTGAGGTGAATCGAAGTAATCTGGTCAGGATTTCACACTACG
GCTTGGAGTTGGGTCGGTGTTGTTTGAGTCACCTTACTCCATAGATGCCACTTCTATCTT
AGAGAAAAGGCTTCCTCTCTTATCAGAAGTGATAGCAGGGCCGTGATGACAGGAGAATTT
TTTAGCTTGGGTTGCTCACTTGCTCTAGCCTCGATGGGAGAGTGCACTGCGTAACATCAC
CAGTATGCCTTTTCCCCAGGTCAAGTTGGTGGCAGAACAGAGATTAGGGCTGCAATGAGT
GCATAAAGAAGATTTTCTCAAATCAAATTGGTTACACAACAATGTTAATGTAGGGCAGAT
TCTTTTAATTAAAGGCACTTATTCGGTTACCTGTTATTTGTTCAAATAAAATCTCAAGAA
CTGGCTGTTGTTCACGTTTGGAAGAATGCTAAGTTTTTGTTCATCGTCTGTTTCTCCGGA
ATAGTAACTACAATTTTGGACTCTTTGCCTTCGCAGGGATCAGATTGTGTGAAGCCTTTT
ATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAGATTTTGGAA
GAAGAGGAGGATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGNTAGAGCACCAGCATGG
TCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGGGGGGGGTTTGGCTGATACACTG
ATACAGGCATTCCTNCANCAGTCGACACACAACATCACCTTGGTTCTTCTACGAGNGCTT
NCGTANTANATCAATTGGTTTTGAGANNGGNGGGACATAAATTTGAGTCAGCAATGGAAG
CGTCCAAGACACTTTCGGCGGGAAANAAGTAGTATTTTCCNCAATT

consensusID : consensus_2868#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 838
fasta sequence

                              [TCGCCGCGCCGCCGCTTGCTCCCGTTCTCGCCGTCGCAGCCCGGGAAGACGAGAGAGTGTGGCCGCCGCCTGCTTCTTCTCTAGCGCTACACCTCGATGGGTCAAGGTCTGAGCCAGCCCGCGCAGGCGGTGGAGGAGCCTTCTCCGCCTGCCGTCGAGGCGGCGCCGTCGTCGTCGCCGTCTCCTGCCCCGGCGCCATCTTCCCTCGAGGCGCTCGCCGCAGAGGCTATGTCATTTGACGAGGATGGCAATGAGTCAATTGATGTGAAGGTACAGAAAGCACTGGACTGTCCATGTGTAGCTGAGTTGAAAAATGGTCCTTGTGGAAGTCAATTTGTTGATGCGTTCTCTTGCTTCCTGAAAAGCACAGAAGAGGAAAAGGGATCAGATTGTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAGATTTTGGAAGAAGAGGAGAATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGTTAGAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGTGGTGTTTGGCTGATACACTGATACAGGCATTCCTCCACCAGTCGACACACAACATCACCTTGTTTCTTCTACGAGTGCTTCCGTATTAGATCAATTGTTTTTGAGATGGTGGTACATAAATTTGAGTCAGCAATGAAGCGTCCAAGACACTTCGGCGGAAATAAGTAGTATTTCCACAATTTAATTTACAACAAACACTTACTGTTCAAATGGAGAACTGACGAACTTGTAATATGACGTCAGTTCTAGACGGATTATACGAGTGGGTAAAGATC]

[+] EMBL AK072980             [TCGCCGCGCCGCCGCTTGCTCCCGTTCTCGCCGTCGCAGCCCGGGAAGACGAGAGAGTGTGGCCGCCGCCTGCTTCTTCTCTAGCGCTACACCTCGATGGGTCAAGGTCTGAGCCAGCCCGCGCAGGCGGTGGAGGAGCCTTCTCCGCCTGCCGTCGAGGCGGCGCCGTCGTCGTCGCCGTCTCCTGCCCCGGCGCCATCTTCCCTCGAGGCGCTCGCCGCAGAGGCTATGTCATTTGACGAGGATGGCAATGAGTCAATTGATGTGAAGGTACAGAAAGCACTGGACTGTCCATGTGTAGCTGAGTTGAAAAATGGTCCTTGTGGAAGTCAATTTGTTGATGCGTTCTCTTGCTTCCTGAAAAGCACAGAAGAGGAAAAGGGATCAGATTGTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAGATTTTGGAAGAAGAGGAGAATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGTTAGAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGTGGTGTTTGGCTGATACACTGATACAGGCATTCCTCCACCAGTCGACACACAACATCACCTTGTTTCTTCTACGAGTGCTTCCGTATTAGATCAATTGTTTTTGAGATGGTGGTACATAAATTTGAGTCAGCAATGAAGCGTCCAAGACACTTCGGCGGAAATAAGTAGTATTTCCACAATTTAATTTACAACAAACACTTACTGTTCAAATGGAGAACTGACGAACTTGTAATATGACGTCAGTTCTAGACGGATTATACGAGTGGGTAAAGATC]




>consensus_2868#1
TCGCCGCGCCGCCGCTTGCTCCCGTTCTCGCCGTCGCAGCCCGGGAAGACGAGAGAGTGT
GGCCGCCGCCTGCTTCTTCTCTAGCGCTACACCTCGATGGGTCAAGGTCTGAGCCAGCCC
GCGCAGGCGGTGGAGGAGCCTTCTCCGCCTGCCGTCGAGGCGGCGCCGTCGTCGTCGCCG
TCTCCTGCCCCGGCGCCATCTTCCCTCGAGGCGCTCGCCGCAGAGGCTATGTCATTTGAC
GAGGATGGCAATGAGTCAATTGATGTGAAGGTACAGAAAGCACTGGACTGTCCATGTGTA
GCTGAGTTGAAAAATGGTCCTTGTGGAAGTCAATTTGTTGATGCGTTCTCTTGCTTCCTG
AAAAGCACAGAAGAGGAAAAGGGATCAGATTGTGTGAAGCCTTTTATCGCACTGCAGGAC
TGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAGATTTTGGAAGAAGAGGAGAATGAC
GAGGAGGCTGAGAAGTCCAACCTGAAAGTTAGAGCACCAGCATGGTCCAGAGAATCTAAG
CCAAAGCTTTGATTAGATGGTGTGGTGTTTGGCTGATACACTGATACAGGCATTCCTCCA
CCAGTCGACACACAACATCACCTTGTTTCTTCTACGAGTGCTTCCGTATTAGATCAATTG
TTTTTGAGATGGTGGTACATAAATTTGAGTCAGCAATGAAGCGTCCAAGACACTTCGGCG
GAAATAAGTAGTATTTCCACAATTTAATTTACAACAAACACTTACTGTTCAAATGGAGAA
CTGACGAACTTGTAATATGACGTCAGTTCTAGACGGATTATACGAGTGGGTAAAGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2868#0      CAAGGAGAAGTGTAAGTTTTGAGGTGAATCGAAGTAATCTGGTCAGGATTTCACACTACG 60
consensus_2868#1      ------------------------------------------------------------
                                                                                  

consensus_2868#0      GCTTGGAGTTGGGTCGGTGTTGTTTGAGTCACCTTACTCCATAGATGCCACTTCTATCTT 120
consensus_2868#1      --------------------------------------------------------TCGC 4
                                                                              **  

consensus_2868#0      AGAGAAAAGGCTTCCTCTCTTATCAGAAGTGATAGCAGGGCCGTGATGACAGGAGAATTT 180
consensus_2868#1      CGCGCCGCCGCTTGCTCCCGTTCTCGCCGTCGCAGC----CCGGGAAGACGAGAGAGTGT 60
                       * *     **** *** * *    *  **   ***    *** ** ***  **** * *

consensus_2868#0      TTTAGCT--TGGGTTGCTCACTTGCTCTA-GCCTCGATGGGAGAG----TGCACTGCGTA 233
consensus_2868#1      GGCCGCCGCCTGCTTCTTCTCTAGCGCTACACCTCGATGGGTCAAGGTCTGAGCCAGCCC 120
                          **     * **  ** ** ** ***  **********  *     **  *      

consensus_2868#0      ACATCACCAGT--ATGCCTTTTCCCCAGGTCAAGTTGGTGGCAGAACAGAGATTAGGGCT 291
consensus_2868#1      GCGCAGGCGGTGGAGGAGCCTTCTCCGCCTGCCGTCGA-GGCGGCGCCGTCGTCGTCGCC 179
                       *     * **  * *    *** **   *   ** *  *** *  * *   *    ** 

consensus_2868#0      GCAATGAGTGCATAAAGAAGATTTTCTCAAATCAAATTGGTTACACAA-CAATGTTAATG 350
consensus_2868#1      GTCTCCTGCCCCGGCGCCATCTTCCCTCGAGGCG--CTCGCCGCAGAGGCTATGTCATTT 237
                      *      *  *       *  **  *** *  *    * *   ** *  * **** * * 

consensus_2868#0      TAGGGCAGATTCTTTTAATTAA---AGGCACTTATTCGGTTACCTGTTATTTGTTCAAAT 407
consensus_2868#1      GACGAGGATGGCAATGAGTCAATTGATGTGAAGGTACAGAAAGCACTGGACTGTCCATGT 297
                       * *       *  * * * **   * *      * * *  * *  *    *** **  *

consensus_2868#0      AAAATCTCAAGAACTGGCTGTTGTTCACGTTTGGAAGAATGCTAAGTTTTTGTT-CATCG 466
consensus_2868#1      GTAGCT----GAGTTGAAAAATGGTC-CTTGTGGAAG----TCAATTTGTTGATGCGTTC 348
                        *       **  **     ** ** * * ******      ** ** *** * * *  

consensus_2868#0      TCTGTTTCTCCGGAATAGTAACTACAATTTTGGACTCTTTGCCTTCGCAGGGATCAGATT 526
consensus_2868#1      TCTTGCTTCCTGAAA-----AGCACAGAAGAGGA------------AAAGGGATCAGATT 391
                      ***   *  * * **     *  ***     ***              ************

consensus_2868#0      GTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTA 586
consensus_2868#1      GTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTA 451
                      ************************************************************

consensus_2868#0      AAGAGATTTTGGAAGAAGAGGAGGATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGNTA 646
consensus_2868#1      AAGAGATTTTGGAAGAAGAGGAGAATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGTTA 511
                      *********************** ********************************* **

consensus_2868#0      GAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGGGGGGGGTT 706
consensus_2868#1      GAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGTGGT--GTT 569
                      *************************************************** **   ***

consensus_2868#0      TGGCTGATACACTGATACAGGCATTCCTNCANCAGTCGACACACAACATCACCTTGGTTC 766
consensus_2868#1      TGGCTGATACACTGATACAGGCATTCCTCCACCAGTCGACACACAACATCACCTTGTTTC 629
                      **************************** ** ************************ ***

consensus_2868#0      TTCTACGAGNGCTTNCGTANTANATCAATTGGTTTTGAGANNGGNGGGACATAAATTTGA 826
consensus_2868#1      TTCTACGAGTGCTTCCGTATTAGATCAATTGTTTTTGAGATGG-TGGTACATAAATTTGA 688
                      ********* **** **** ** ******** ********  *  ** ************

consensus_2868#0      GTCAGCAATGGAAGCGTCCAAGACACTTTCGGCGGGAAANAAGTAGTATTTTCCNCAATT 886
consensus_2868#1      GTCAGCAATG-AAGCGTCCAAGACACTT-CGGCGG-AAATAAGTAGTATTT-CCACAATT 744
                      ********** ***************** ****** *** *********** ** *****

consensus_2868#0      ------------------------------------------------------------
consensus_2868#1      TAATTTACAACAAACACTTACTGTTCAAATGGAGAACTGACGAACTTGTAATATGACGTC 804
                                                                                  

consensus_2868#0      ----------------------------------
consensus_2868#1      AGTTCTAGACGGATTATACGAGTGGGTAAAGATC 838