cluster # 2870

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Oryza sativa
cluster # 2870 cluster # 2870 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2870#0 length = 880 sequences # 1

consensus_2870#1 length = 727 sequences # 1

consensusID : consensus_2870#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 880
fasta sequence

                              [GGACGAGACAAGGGGGCAATAGAAGGACAACAGCTTAACAATAAGAGCTCAGATGAACTGAAGGAACTCCTACCAAAAATTCAGGTTTAGTTGTACTCTCTTGTTTTCTTTTCATTAATTAAATGCGAATATAAGCTAAATCTATGTCCCAAGCTCAGGTAATAGCTCGCTCCTTGCCTATGGACAAATACAAATTGGTGACAAGCCTGAAAAGTATGTATCAAGAGGTTGTTGCGGTGACTGGTGATGGAACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATGGGTATCACTGGAACTGAGGTTGCAAAAGAGAGCGCTGATGTTATAATAATGGATGACAATTTCGAAACCATTGTAAATGTTGCTAGATGGGGCCGTGCAGTTTACTTAAACATCCAGAAGTTTGTGCAGTTCCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCGTGCATCATAGGGAGTGCACCACTTACTGCTGTTCAGTTGCTATGGGTGAACATGATTATGGATACGTTGGGAGCCTTGGCCTTAGCCACAGAACCACCAAATGACGAAATGATGAAGAGGCCCCCTGTTAGGCGAGGAGATAATTTTATCACTCGGATTATGTGGAGAAATATTCTTGGCCAAGGTTTGTATCAGCTCCTTGTGCTGGCTACTCTAATGGGTATTGGAAAGAAACTCCNTAGTATTGGAANGTCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGTCTTTTGNCAGGNTTTCAATGAATAAATTGTAGGGAGATGGNAAAGATCAATGNCCTCCAGGGATCTTCAGAACTGGATCTTTGGTGGGATATTGACAGCTA]

[+] EMBL CA764335             [GGACGAGACAAGGGGGCAATAGAAGGACAACAGCTTAACAATAAGAGCTCAGATGAACTGAAGGAACTCCTACCAAAAATTCAGGTTTAGTTGTACTCTCTTGTTTTCTTTTCATTAATTAAATGCGAATATAAGCTAAATCTATGTCCCAAGCTCAGGTAATAGCTCGCTCCTTGCCTATGGACAAATACAAATTGGTGACAAGCCTGAAAAGTATGTATCAAGAGGTTGTTGCGGTGACTGGTGATGGAACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATGGGTATCACTGGAACTGAGGTTGCAAAAGAGAGCGCTGATGTTATAATAATGGATGACAATTTCGAAACCATTGTAAATGTTGCTAGATGGGGCCGTGCAGTTTACTTAAACATCCAGAAGTTTGTGCAGTTCCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCGTGCATCATAGGGAGTGCACCACTTACTGCTGTTCAGTTGCTATGGGTGAACATGATTATGGATACGTTGGGAGCCTTGGCCTTAGCCACAGAACCACCAAATGACGAAATGATGAAGAGGCCCCCTGTTAGGCGAGGAGATAATTTTATCACTCGGATTATGTGGAGAAATATTCTTGGCCAAGGTTTGTATCAGCTCCTTGTGCTGGCTACTCTAATGGGTATTGGAAAGAAACTCCNTAGTATTGGAANGTCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGTCTTTTGNCAGGNTTTCAATGAATAAATTGTAGGGAGATGGNAAAGATCAATGNCCTCCAGGGATCTTCAGAACTGGATCTTTGGTGGGATATTGACAGCTA]




>consensus_2870#0
GGACGAGACAAGGGGGCAATAGAAGGACAACAGCTTAACAATAAGAGCTCAGATGAACTG
AAGGAACTCCTACCAAAAATTCAGGTTTAGTTGTACTCTCTTGTTTTCTTTTCATTAATT
AAATGCGAATATAAGCTAAATCTATGTCCCAAGCTCAGGTAATAGCTCGCTCCTTGCCTA
TGGACAAATACAAATTGGTGACAAGCCTGAAAAGTATGTATCAAGAGGTTGTTGCGGTGA
CTGGTGATGGAACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATGG
GTATCACTGGAACTGAGGTTGCAAAAGAGAGCGCTGATGTTATAATAATGGATGACAATT
TCGAAACCATTGTAAATGTTGCTAGATGGGGCCGTGCAGTTTACTTAAACATCCAGAAGT
TTGTGCAGTTCCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCGT
GCATCATAGGGAGTGCACCACTTACTGCTGTTCAGTTGCTATGGGTGAACATGATTATGG
ATACGTTGGGAGCCTTGGCCTTAGCCACAGAACCACCAAATGACGAAATGATGAAGAGGC
CCCCTGTTAGGCGAGGAGATAATTTTATCACTCGGATTATGTGGAGAAATATTCTTGGCC
AAGGTTTGTATCAGCTCCTTGTGCTGGCTACTCTAATGGGTATTGGAAAGAAACTCCNTA
GTATTGGAANGTCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGTC
TTTTGNCAGGNTTTCAATGAATAAATTGTAGGGAGATGGNAAAGATCAATGNCCTCCAGG
GATCTTCAGAACTGGATCTTTGGTGGGATATTGACAGCTA

consensusID : consensus_2870#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 727
fasta sequence

                              [AACACTCTGCATCGCATTTAAGGATATGGATGAATTTCCCAATGATCAACCTATATCAGATGATGGTTACACACTAATAGCAGTTTTTGGTATAAAGGATCCAGTCCGTCCTGGTGTCAAGGATGCAGTAAGGACCTGCATGGCTGCTGGTATTAGAGTAAGAATGGTGACTGGTGATGGAACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATGGGTATCACTGGAACTGAGGTTGCAAAAGAGAGCGCTGATGTTATAATAATGGATGACAATTTCGAAACCATTGTAAATGTTGCTAGATGGGGCCGTGCAGTTTACTTAAACATCCAGAAGTTTGTGCAGTTCCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCGTGCATCATAGGGAGTGCACCACTTACTGCTGTTCAGTTGCTATGGGTGAACATGATTATGGATACGTTGGGAGCCTTGGCCTTAGCCACAGAACCACCAAATGACGAAATGATGAAGAGGCCCCCTGTTAGGCGAGGAGATAATTTTATCACTCGGATTATGTGGAGAAATATTCTTGGCCAAGGTTTGTATCAGCTCCTTGTGCTGGCTACTCTAATGGTTATTGGAAAGAAACTCCTTAGTATTGAAGGTCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGTCTTTTGCCAGGTTTTCAAT]

[+] EMBL CB645224             [AACACTCTGCATCGCATTTAAGGATATGGATGAATTTCCCAATGATCAACCTATATCAGATGATGGTTACACACTAATAGCAGTTTTTGGTATAAAGGATCCAGTCCGTCCTGGTGTCAAGGATGCAGTAAGGACCTGCATGGCTGCTGGTATTAGAGTAAGAATGGTGACTGGTGATGGAACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATGGGTATCACTGGAACTGAGGTTGCAAAAGAGAGCGCTGATGTTATAATAATGGATGACAATTTCGAAACCATTGTAAATGTTGCTAGATGGGGCCGTGCAGTTTACTTAAACATCCAGAAGTTTGTGCAGTTCCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCGTGCATCATAGGGAGTGCACCACTTACTGCTGTTCAGTTGCTATGGGTGAACATGATTATGGATACGTTGGGAGCCTTGGCCTTAGCCACAGAACCACCAAATGACGAAATGATGAAGAGGCCCCCTGTTAGGCGAGGAGATAATTTTATCACTCGGATTATGTGGAGAAATATTCTTGGCCAAGGTTTGTATCAGCTCCTTGTGCTGGCTACTCTAATGGTTATTGGAAAGAAACTCCTTAGTATTGAAGGTCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGTCTTTTGCCAGGTTTTCAAT]




>consensus_2870#1
AACACTCTGCATCGCATTTAAGGATATGGATGAATTTCCCAATGATCAACCTATATCAGA
TGATGGTTACACACTAATAGCAGTTTTTGGTATAAAGGATCCAGTCCGTCCTGGTGTCAA
GGATGCAGTAAGGACCTGCATGGCTGCTGGTATTAGAGTAAGAATGGTGACTGGTGATGG
AACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATGGGTATCACTGG
AACTGAGGTTGCAAAAGAGAGCGCTGATGTTATAATAATGGATGACAATTTCGAAACCAT
TGTAAATGTTGCTAGATGGGGCCGTGCAGTTTACTTAAACATCCAGAAGTTTGTGCAGTT
CCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCGTGCATCATAGG
GAGTGCACCACTTACTGCTGTTCAGTTGCTATGGGTGAACATGATTATGGATACGTTGGG
AGCCTTGGCCTTAGCCACAGAACCACCAAATGACGAAATGATGAAGAGGCCCCCTGTTAG
GCGAGGAGATAATTTTATCACTCGGATTATGTGGAGAAATATTCTTGGCCAAGGTTTGTA
TCAGCTCCTTGTGCTGGCTACTCTAATGGTTATTGGAAAGAAACTCCTTAGTATTGAAGG
TCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGTCTTTTGCCAGGT
TTTCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2870#0      GGACGAGACAAGGGGGCAATAGAAGGACAACAGCTTAACAATAAGAGCTCAGATGAACTG 60
consensus_2870#1      ------------------------------------------------------------
                                                                                  

consensus_2870#0      AAGGAACTCCTACCAAAAATTCAGGTTTAGTTGTACTCTCTTGTTTTCTTTTCATTAATT 120
consensus_2870#1      -AACACTCTGCATCGCATTTAAGGATATGGATGAATTTCCCAATGATCAACCTAT--ATC 57
                       *  *      * *  *  *   * * * * ** * *  *   *  **     **  ** 

consensus_2870#0      AAATG-CGAATATAAGCTAAATCTATGTCCCAAGCTCAGGTAATAGCTCGCTCCTTGCCT 179
consensus_2870#1      AGATGATGGTTACACACTAATAGCA-GTTTTTGGTATA---AAGGATCCAGTCCGT-CCT 112
                      * ***  *  ** *  ****    * **     *   *   **     *  *** * ***

consensus_2870#0      ATGGACAAATACAAATTGGTGACAAGCCTGAAAAGTATGTATCAAGAGGTTGTTGCGGTG 239
consensus_2870#1      GGTGTCAAGGATGCAGTAAGGACCTGCATGGCTGCTG-GTATTAG--AGTAAGAATGGTG 169
                         * ***  *   * *   ***  ** **     *  **** *    **      ****

consensus_2870#0      ACTGGTGATGGAACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATG 299
consensus_2870#1      ACTGGTGATGGAACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATG 229
                      ************************************************************

consensus_2870#0      GGTATCACTGGAACTGAGGTTGCAAAAGAGAGCGCTGATGTTATAATAATGGATGACAAT 359
consensus_2870#1      GGTATCACTGGAACTGAGGTTGCAAAAGAGAGCGCTGATGTTATAATAATGGATGACAAT 289
                      ************************************************************

consensus_2870#0      TTCGAAACCATTGTAAATGTTGCTAGATGGGGCCGTGCAGTTTACTTAAACATCCAGAAG 419
consensus_2870#1      TTCGAAACCATTGTAAATGTTGCTAGATGGGGCCGTGCAGTTTACTTAAACATCCAGAAG 349
                      ************************************************************

consensus_2870#0      TTTGTGCAGTTCCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCG 479
consensus_2870#1      TTTGTGCAGTTCCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCG 409
                      ************************************************************

consensus_2870#0      TGCATCATAGGGAGTGCACCACTTACTGCTGTTCAGTTGCTATGGGTGAACATGATTATG 539
consensus_2870#1      TGCATCATAGGGAGTGCACCACTTACTGCTGTTCAGTTGCTATGGGTGAACATGATTATG 469
                      ************************************************************

consensus_2870#0      GATACGTTGGGAGCCTTGGCCTTAGCCACAGAACCACCAAATGACGAAATGATGAAGAGG 599
consensus_2870#1      GATACGTTGGGAGCCTTGGCCTTAGCCACAGAACCACCAAATGACGAAATGATGAAGAGG 529
                      ************************************************************

consensus_2870#0      CCCCCTGTTAGGCGAGGAGATAATTTTATCACTCGGATTATGTGGAGAAATATTCTTGGC 659
consensus_2870#1      CCCCCTGTTAGGCGAGGAGATAATTTTATCACTCGGATTATGTGGAGAAATATTCTTGGC 589
                      ************************************************************

consensus_2870#0      CAAGGTTTGTATCAGCTCCTTGTGCTGGCTACTCTAATGGGTATTGGAAAGAAACTCCNT 719
consensus_2870#1      CAAGGTTTGTATCAGCTCCTTGTGCTGGCTACTCTAATGGTTATTGGAAAGAAACTCCTT 649
                      **************************************** ***************** *

consensus_2870#0      AGTATTGGAANGTCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGT 779
consensus_2870#1      AGTATTG-AAGGTCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGT 708
                      ******* ** *************************************************

consensus_2870#0      CTTTTGNCAGGNTTTCAATGAATAAATTGTAGGGAGATGGNAAAGATCAATGNCCTCCAG 839
consensus_2870#1      CTTTTGCCAGGTTTTCAAT----------------------------------------- 727
                      ****** **** *******                                         

consensus_2870#0      GGATCTTCAGAACTGGATCTTTGGTGGGATATTGACAGCTA 880
consensus_2870#1      -----------------------------------------