cluster # 288

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Oryza sativa
cluster # 288 cluster # 288 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_288#0 length = 861 sequences # 1

consensus_288#1 length = 773 sequences # 1

consensusID : consensus_288#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 861
fasta sequence

                              [ACGATATGAACTTATTCGAGAAAAAATTGGGGAAAACATACAGTAGAATTTTGTATCAGGAAACAGTAACAAATTCACAACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGCAGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCTCCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTCCGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCAGTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCANGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGCCTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGGTGAAGGAGAGACACANCTTGAGAACCTGGCTGAGAAGCTGGAAACCCGCTGTTGTCCGCACAAGGTGTGGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCGGCGGTGCCCAAAGTACAGGTTTCTTCAATCTTCAAGAAAGCTCAAGCTTTGGTAAATGAAGCACTATTTTAGGATCCCTCAAAATTCAAAACTTTTCCAAGCCAATCCGGCTTTTCAATAACTGGGNTTTAACGTCAAAAGGGTGGCATTTGGAAGGTCCAACCAGAATCTTGCAGCCCAGGAACTGGCTATAACCCGGTTCCATTTTTTGGGAATATATGGACCGGGCCTTGTTTTTGCCAAAANAAAAAAAAANNNNNNTNNATTTAATTTTTATC]

[+] EMBL BE040613             [ACGATATGAACTTATTCGAGAAAAAATTGGGGAAAACATACAGTAGAATTTTGTATCAGGAAACAGTAACAAATTCACAACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGCAGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCTCCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTCCGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCAGTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCANGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGCCTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGGTGAAGGAGAGACACANCTTGAGAACCTGGCTGAGAAGCTGGAAACCCGCTGTTGTCCGCACAAGGTGTGGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCGGCGGTGCCCAAAGTACAGGTTTCTTCAATCTTCAAGAAAGCTCAAGCTTTGGTAAATGAAGCACTATTTTAGGATCCCTCAAAATTCAAAACTTTTCCAAGCCAATCCGGCTTTTCAATAACTGGGNTTTAACGTCAAAAGGGTGGCATTTGGAAGGTCCAACCAGAATCTTGCAGCCCAGGAACTGGCTATAACCCGGTTCCATTTTTTGGGAATATATGGACCGGGCCTTGTTTTTGCCAAAANAAAAAAAAANNNNNNTNNATTTAATTTTTATC]




>consensus_288#0
ACGATATGAACTTATTCGAGAAAAAATTGGGGAAAACATACAGTAGAATTTTGTATCAGG
AAACAGTAACAAATTCACAACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGC
AGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCT
CCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTC
CGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCA
GTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCA
NGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGC
CTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGGTGAAGGAGA
GACACANCTTGAGAACCTGGCTGAGAAGCTGGAAACCCGCTGTTGTCCGCACAAGGTGTG
GATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCGGCGGTGCCCAAAGTACA
GGTTTCTTCAATCTTCAAGAAAGCTCAAGCTTTGGTAAATGAAGCACTATTTTAGGATCC
CTCAAAATTCAAAACTTTTCCAAGCCAATCCGGCTTTTCAATAACTGGGNTTTAACGTCA
AAAGGGTGGCATTTGGAAGGTCCAACCAGAATCTTGCAGCCCAGGAACTGGCTATAACCC
GGTTCCATTTTTTGGGAATATATGGACCGGGCCTTGTTTTTGCCAAAANAAAAAAAAANN
NNNNTNNATTTAATTTTTATC

consensusID : consensus_288#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 773
fasta sequence

                              [ACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGCAGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCTCCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTCCGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCAGTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCAGGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGCCTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGTGAAAGGAGAGACACAACTGAAGAACCTGGCTGAGAAGCTGGAAACCGCTGGTGTCCGGCACAAGGTGTGGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCGCCGTGCCCAAAGTCACAGGTTTCTTCATTCTTCAAGAAGCTCAAGCTTTGTAAATGAGCCACTATTTAGGATCCTCAAAATTCAAAACTTTGCAAGCAATCTGTCTTTTCATTACTGGTTTTATCGTCAAAGGTTGGCATTAGAAGTCACACCAGATACTGCAGCCATGTACTGTCTATACCTGTTCCATTTTTGGATTTATTGATCGTGCATGTTTTTGCCATGGGACCATGGTGGCGGGTTGATGAAGCAATCAGTGAGAAATTGAC]

[+] EMBL AK108075             [ACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGCAGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCTCCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTCCGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCAGTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCAGGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGCCTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGTGAAAGGAGAGACACAACTGAAGAACCTGGCTGAGAAGCTGGAAACCGCTGGTGTCCGGCACAAGGTGTGGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCGCCGTGCCCAAAGTCACAGGTTTCTTCATTCTTCAAGAAGCTCAAGCTTTGTAAATGAGCCACTATTTAGGATCCTCAAAATTCAAAACTTTGCAAGCAATCTGTCTTTTCATTACTGGTTTTATCGTCAAAGGTTGGCATTAGAAGTCACACCAGATACTGCAGCCATGTACTGTCTATACCTGTTCCATTTTTGGATTTATTGATCGTGCATGTTTTTGCCATGGGACCATGGTGGCGGGTTGATGAAGCAATCAGTGAGAAATTGAC]




>consensus_288#1
ACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGCAGCCGCGACGCATCCAAAC
TCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCTCCCGATCTCACCGCGAGCC
AGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTCCGCCGCCGCCGCCGCCGTT
GGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCAGTACGTGGTGCTTCGGCGC
GACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCAGGGGTGCCACGCCGCCGTT
GCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGCCTACTGCGGGCCAGACAAC
CTCGACCGGATGCACAAGGTAACACTGGAGGTGAAAGGAGAGACACAACTGAAGAACCTG
GCTGAGAAGCTGGAAACCGCTGGTGTCCGGCACAAGGTGTGGATAGAGCAGCCAGAGAAC
ATACCAACTTGCATAGCGACTGCGCCGTGCCCAAAGTCACAGGTTTCTTCATTCTTCAAG
AAGCTCAAGCTTTGTAAATGAGCCACTATTTAGGATCCTCAAAATTCAAAACTTTGCAAG
CAATCTGTCTTTTCATTACTGGTTTTATCGTCAAAGGTTGGCATTAGAAGTCACACCAGA
TACTGCAGCCATGTACTGTCTATACCTGTTCCATTTTTGGATTTATTGATCGTGCATGTT
TTTGCCATGGGACCATGGTGGCGGGTTGATGAAGCAATCAGTGAGAAATTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_288#0      ACGATATGAACTTATTCGAGAAAAAATTGGGGAAAACATACAGTAGAATTTTGTATCAGG 60
consensus_288#1      ------------------------------------------------------------
                                                                                 

consensus_288#0      AAACAGTAACAAATTCACAACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGC 120
consensus_288#1      -------------------ACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGC 41
                                        *****************************************

consensus_288#0      AGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCT 180
consensus_288#1      AGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCT 101
                     ************************************************************

consensus_288#0      CCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTC 240
consensus_288#1      CCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTC 161
                     ************************************************************

consensus_288#0      CGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCA 300
consensus_288#1      CGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCA 221
                     ************************************************************

consensus_288#0      GTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCA 360
consensus_288#1      GTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCA 281
                     ************************************************************

consensus_288#0      NGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGC 420
consensus_288#1      GGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGC 341
                      ***********************************************************

consensus_288#0      CTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGGTGAAGGAGA 480
consensus_288#1      CTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGTGAAAGGAGA 401
                     **************************************************   *******

consensus_288#0      GACACANCTTGAGAACCTGGCTGAGAAGCTGGAAACCCGCTGTTGTCCG-CACAAGGTGT 539
consensus_288#1      GACACAACTGAAGAACCTGGCTGAGAAGCTGGAAACC-GCTGGTGTCCGGCACAAGGTGT 460
                     ****** **  ************************** **** ****** **********

consensus_288#0      GGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCGGCGGTGCCCAAAGT-A 598
consensus_288#1      GGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCG-CCGTGCCCAAAGTCA 519
                     ******************************************** * *********** *

consensus_288#0      CAGGTTTCTTCAATCTTCAAGAAAGCTCAAGCTTTGGTAAATGAAGCACTATTTTAGGAT 658
consensus_288#1      CAGGTTTCTTCATTCTTCAAGAA-GCTCAAGCTTTG-TAAATGAGCCACTATTT-AGGAT 576
                     ************ ********** ************ *******  ******** *****

consensus_288#0      CCCTCAAAATTCAAAACTTTTCCAAGCCAATCCGGCTTTTCAATAACTGGGNTTTAACGT 718
consensus_288#1      CC-TCAAAATTCAAAACTTTGCAAG--CAATCTGTCTTTTCATTACT--GGTTTTATCGT 631
                     ** ***************** * *   ***** * ******* **    ** **** ***

consensus_288#0      CAAAAGGGTGGCATTTGGAAGGTCCAACCAGAATCTTGCAGCCCAGGAACTGGCTATAAC 778
consensus_288#1      CAAA-GGTTGGCATTAGAA--GTCACACCAGA-TACTGCAGCC-ATGTACTGTCTATA-- 684
                     **** ** ******* * *  ***  ****** *  ******* * * **** *****  

consensus_288#0      CCGGTTCCATTTTTTGGGAATATATGGACCGGGCCTTGTTTTTGCCAAAANAAAAAAAAA 838
consensus_288#1      CCTGTTCCATTTTT---GGATTTATTGATCGTGCAT-GTTTTTGCCATGGGACCATGGT- 739
                     ** ***********   * ** *** ** ** ** * **********    *  *     

consensus_288#0      NNNNNNTNNATTTAATTTTTATC----------- 861
consensus_288#1      GGCGGGTTGATGAAGCAATCAGTGAGAAATTGAC 773
                           *  **  *    * *