cluster # 2881

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Oryza sativa
cluster # 2881 cluster # 2881 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2881#0 length = 264 sequences # 1

consensus_2881#1 length = 241 sequences # 1

consensusID : consensus_2881#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [AGCTGAAGAAAGGAACCGCTGTGTTATACTGTGAAAAATTACTCCATGACGTACTCCGGTATGGTGTTTTTTTCATGGGCAGGCTTGTGCAGTTGGTTGCACCGAGTAATTAATTATTCAGAGTGTCGTGTGTAAAGAGGGCTATTGCATTGTCGTTTTGACATATTGATGTGTTCTCTGAATGTTCTATGCACCGGTAAATCTTCTCATGTGGAGAAGCTGCTATTAGATACGCCCTTTTATTTGCCTGTTTTAAAAAAAAAA]

[+] EMBL BI795468             [AGCTGAAGAAAGGAACCGCTGTGTTATACTGTGAAAAATTACTCCATGACGTACTCCGGTATGGTGTTTTTTTCATGGGCAGGCTTGTGCAGTTGGTTGCACCGAGTAATTAATTATTCAGAGTGTCGTGTGTAAAGAGGGCTATTGCATTGTCGTTTTGACATATTGATGTGTTCTCTGAATGTTCTATGCACCGGTAAATCTTCTCATGTGGAGAAGCTGCTATTAGATACGCCCTTTTATTTGCCTGTTTTAAAAAAAAAA]




>consensus_2881#0
AGCTGAAGAAAGGAACCGCTGTGTTATACTGTGAAAAATTACTCCATGACGTACTCCGGT
ATGGTGTTTTTTTCATGGGCAGGCTTGTGCAGTTGGTTGCACCGAGTAATTAATTATTCA
GAGTGTCGTGTGTAAAGAGGGCTATTGCATTGTCGTTTTGACATATTGATGTGTTCTCTG
AATGTTCTATGCACCGGTAAATCTTCTCATGTGGAGAAGCTGCTATTAGATACGCCCTTT
TATTTGCCTGTTTTAAAAAAAAAA

consensusID : consensus_2881#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [GGTGTTTTTTTCATGGGCAGGCTTGTGCAGTTGGTTGCACCGAGTAATTAATTATTCAGAGTGTCGTGTGTAAAGAGGGCTATTGCATTGTCGTTTTGACATATTGATGTGTTCTCTGAATGTTCTATGCACCGGTAAATCTTCTCATGTGGAGAAGCTGCTATTAGATACGCCATTTTATTTGCCTGTTTTTGGGTGTATCTTTTCGTATTTTTCTCTCGACTAGCTTTCATCCTCAATT]

[-] EMBL CA882798             [GGTGTTTTTTTCATGGGCAGGCTTGTGCAGTTGGTTGCACCGAGTAATTAATTATTCAGAGTGTCGTGTGTAAAGAGGGCTATTGCATTGTCGTTTTGACATATTGATGTGTTCTCTGAATGTTCTATGCACCGGTAAATCTTCTCATGTGGAGAAGCTGCTATTAGATACGCCATTTTATTTGCCTGTTTTTGGGTGTATCTTTTCGTATTTTTCTCTCGACTAGCTTTCATCCTCAATT]




>consensus_2881#1
GGTGTTTTTTTCATGGGCAGGCTTGTGCAGTTGGTTGCACCGAGTAATTAATTATTCAGA
GTGTCGTGTGTAAAGAGGGCTATTGCATTGTCGTTTTGACATATTGATGTGTTCTCTGAA
TGTTCTATGCACCGGTAAATCTTCTCATGTGGAGAAGCTGCTATTAGATACGCCATTTTA
TTTGCCTGTTTTTGGGTGTATCTTTTCGTATTTTTCTCTCGACTAGCTTTCATCCTCAAT
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2881#0      AGCTGAAGAAAGGAACCGCTGTGTTATACTGTGAAAAATTACTCCATGACGTACTCCGGT 60
consensus_2881#1      ------------------------------------------------------------
                                                                                  

consensus_2881#0      ATGGTGTTTTTTTCATGGGCAGGCTTGTGCAGTTGGTTGCACCGAGTAATTAATTATTCA 120
consensus_2881#1      --GGTGTTTTTTTCATGGGCAGGCTTGTGCAGTTGGTTGCACCGAGTAATTAATTATTCA 58
                        **********************************************************

consensus_2881#0      GAGTGTCGTGTGTAAAGAGGGCTATTGCATTGTCGTTTTGACATATTGATGTGTTCTCTG 180
consensus_2881#1      GAGTGTCGTGTGTAAAGAGGGCTATTGCATTGTCGTTTTGACATATTGATGTGTTCTCTG 118
                      ************************************************************

consensus_2881#0      AATGTTCTATGCACCGGTAAATCTTCTCATGTGGAGAAGCTGCTATTAGATACGCCCTTT 240
consensus_2881#1      AATGTTCTATGCACCGGTAAATCTTCTCATGTGGAGAAGCTGCTATTAGATACGCCATTT 178
                      ******************************************************** ***

consensus_2881#0      TATTTGCCTGTTTTAAAAAAAAAA------------------------------------ 264
consensus_2881#1      TATTTGCCTGTTTTTGGGTGTATCTTTTCGTATTTTTCTCTCGACTAGCTTTCATCCTCA 238
                      **************       *                                      

consensus_2881#0      ---
consensus_2881#1      ATT 241