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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2262 fasta sequence
[GGTTCTCAAAAAAAAAGTGAAAGACAGAGAGGTCGGAGAAGGGAAAAGTGGCGATGAAACAAGGGAAAGTGGAGATGACGCCGGCGGTCGCCGCCGCGGCGGTTCTGCCGGTGGGGTTCCGTTTCCGGCCGACGGACGAGGAGCTGGTGAGGCACTATCTGAAGGGAAAGATCGCTGGGCGGAGCCACCCTGACCTCCTCCTCATCCCGGACGTGGACCTCTCCACCTGCGAGCCCTGGGATCTCCCGGCCATGTCCGTTATCAAGTCCGACGACCCCGAGTGGTTCTTCTTCGCCCCCCGCGACCGCAAGTATCCCGGCGGCCACCGCTCCAACCGCTCCACCGCCGCCGGCTACTGGAAGGCCACCGGCAAGGACCGCCTCATCCGCTCCCGCCCCGCCGGCCCCCTCATCGGCATCAAGAAGACCCTCGTCTTCCACCGCGGCAGAGCTCCGCGGGGCCTCCGCACCGCCTGGATCATGCACGAGTACCGCACCACTGAGCCTCACTTCCAATCAGGCAAAAACGGTAGCTTCGTTCTGTATCGCCTGTTTAACAAGCACGAACAAGATGATACCCATACCCCGGCCTCCAATTTGGACCAACAATTGTCCACGTCTTCTCAAGGCAATCCCCAAAATGGCACACCTGCTGTCCAACCGGCCCTCGCCTCAATAATGAAGGATCATCAGACCTTACCATCATCTGGTTTCAGCCAACTGACTGAAATACAAGATGCTAGTACATCTGTCCATGACAAAGAGCAAACTGTAGCCCATGACGATGCTTTTCTGGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACAATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCAATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGCAAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAAACGTAGAGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTTGGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAGGTTAGAATATTCTAGAATTTACTCTTACACATTTTGACTAATCTCATGAGAACATTTTCTTCCCTTCTATTTCCTGTTCTAAACAAAGCGTGCAGACAACACAGATGCTACTTGCTGTTCTTCTTCAATCAATGCACCACAAACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAGTGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCCTCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCCCCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTTCAGATGCCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATCTCGTTGATCCACAACAAGGAACTGCTGCAAGAAGGATCCGCCTTGTATGCTCTGTTGAGAGGGCATCAGTCTCTCAACCTGTATCCTCACATTTGCAGAGTGAATATGAAGCTGGATCATGCTGTAACACTCGCAATTCATCTAATAACAAGAAGGAAAGTGTCAGGAGTGAAGATGAAGCTGGATCATGTTGTAACACTGGAAGTTCATCTAATAACCACAGCGAGGAAAATGACGATGCAGCCTCCCAGATTATGGATGGAGAACCAATGCATATTCAGTGCAAAGAGGATACCCCTATTCAAGTGGATCATTCAGCGGAAGTTATGGACAAGCTCCAAGGCTTCTCCTTTCATGAAGAGATGTTGGTACATGCTAATCAGCCCCGTGGAACTAATCTAAAGCAGAGGCTGTTGAGAGTGGAGTCTAGAAATAGCAATGAGAATAATGTACCTTCGTTGGAGACACGAGAACAGCAGCATGCACCTCATATTCAGAAATGGACTAGCTCTGTTGTGCGACTAGGGTGGGGGTGGCAGTGGCCGGCTCTCTTTGTGATGGCCGGCTCTCTGCTTTTGTTGGTTGGTGTGTGGAAATCTCTGAATCACACTACCTGACTAATGTAAATAAATGGTCGCTTAGCTTAAGCTTGGGAGCCTCATATATACTACTACATATGTTCTTTGGAAAGTACTGCAGGTAAC]
[+] EMBL AK064178 [GGTTCTCAAAAAAAAAGTGAAAGACAGAGAGGTCGGAGAAGGGAAAAGTGGCGATGAAACAAGGGAAAGTGGAGATGACGCCGGCGGTCGCCGCCGCGGCGGTTCTGCCGGTGGGGTTCCGTTTCCGGCCGACGGACGAGGAGCTGGTGAGGCACTATCTGAAGGGAAAGATCGCTGGGCGGAGCCACCCTGACCTCCTCCTCATCCCGGACGTGGACCTCTCCACCTGCGAGCCCTGGGATCTCCCGGCCATGTCCGTTATCAAGTCCGACGACCCCGAGTGGTTCTTCTTCGCCCCCCGCGACCGCAAGTATCCCGGCGGCCACCGCTCCAACCGCTCCACCGCCGCCGGCTACTGGAAGGCCACCGGCAAGGACCGCCTCATCCGCTCCCGCCCCGCCGGCCCCCTCATCGGCATCAAGAAGACCCTCGTCTTCCACCGCGGCAGAGCTCCGCGGGGCCTCCGCACCGCCTGGATCATGCACGAGTACCGCACCACTGAGCCTCACTTCCAATCAGGCAAAAACGGTAGCTTCGTTCTGTATCGCCTGTTTAACAAGCACGAACAAGATGATACCCATACCCCGGCCTCCAATTTGGACCAACAATTGTCCACGTCTTCTCAAGGCAATCCCCAAAATGGCACACCTGCTGTCCAACCGGCCCTCGCCTCAATAATGAAGGATCATCAGACCTTACCATCATCTGGTTTCAGCCAACTGACTGAAATACAAGATGCTAGTACATCTGTCCATGACAAAGAGCAAACTGTAGCCCATGACGATGCTTTTCTGGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACAATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCAATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGCAAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAAACGTAGAGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTTGGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAGGTTAGAATATTCTAGAATTTACTCTTACACATTTTGACTAATCTCATGAGAACATTTTCTTCCCTTCTATTTCCTGTTCTAAACAAAGCGTGCAGACAACACAGATGCTACTTGCTGTTCTTCTTCAATCAATGCACCACAAACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAGTGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCCTCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCCCCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTTCAGATGCCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATCTCGTTGATCCACAACAAGGAACTGCTGCAAGAAGGATCCGCCTTGTATGCTCTGTTGAGAGGGCATCAGTCTCTCAACCTGTATCCTCACATTTGCAGAGTGAATATGAAGCTGGATCATGCTGTAACACTCGCAATTCATCTAATAACAAGAAGGAAAGTGTCAGGAGTGAAGATGAAGCTGGATCATGTTGTAACACTGGAAGTTCATCTAATAACCACAGCGAGGAAAATGACGATGCAGCCTCCCAGATTATGGATGGAGAACCAATGCATATTCAGTGCAAAGAGGATACCCCTATTCAAGTGGATCATTCAGCGGAAGTTATGGACAAGCTCCAAGGCTTCTCCTTTCATGAAGAGATGTTGGTACATGCTAATCAGCCCCGTGGAACTAATCTAAAGCAGAGGCTGTTGAGAGTGGAGTCTAGAAATAGCAATGAGAATAATGTACCTTCGTTGGAGACACGAGAACAGCAGCATGCACCTCATATTCAGAAATGGACTAGCTCTGTTGTGCGACTAGGGTGGGGGTGGCAGTGGCCGGCTCTCTTTGTGATGGCCGGCTCTCTGCTTTTGTTGGTTGGTGTGTGGAAATCTCTGAATCACACTACCTGACTAATGTAAATAAATGGTCGCTTAGCTTAAGCTTGGGAGCCTCATATATACTACTACATATGTTCTTTGGAAAGTACTGCAGGTAAC]
consensusID : consensus_2883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 867 fasta sequence
[GGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACAATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCAATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGCAAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAGACGTAGAGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTTGGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAGACAACACAGATGCTACCTTGCTGTTCTTCTTCAATCAATGCACCACAAACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAGTGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCCTCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCCCCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTTTCAGATGCCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATCTCGNTGATCCACAACAAGGAACTGCTGCAAGAANGATNCCGCCTTGTATGCTCTGNTGAGAGGGCATCAGTCTCTCAANCTGTATCTTTACATTTGGCAGAGNGAATATGAAGCTGGATCATGCTGGAACACTCGCAATTATCTAATAACAGAAAGGAAAGGNTCAGGAGNGNANATNAAACTGGATCATGTTGA]
[+] EMBL CA764403 [GGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACAATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCAATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGCAAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAGACGTAGAGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTTGGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAGACAACACAGATGCTACCTTGCTGTTCTTCTTCAATCAATGCACCACAAACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAGTGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCCTCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCCCCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTTTCAGATGCCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATCTCGNTGATCCACAACAAGGAACTGCTGCAAGAANGATNCCGCCTTGTATGCTCTGNTGAGAGGGCATCAGTCTCTCAANCTGTATCTTTACATTTGGCAGAGNGAATATGAAGCTGGATCATGCTGGAACACTCGCAATTATCTAATAACAGAAAGGAAAGGNTCAGGAGNGNANATNAAACTGGATCATGTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2883#0 GGTTCTCAAAAAAAAAGTGAAAGACAGAGAGGTCGGAGAAGGGAAAAGTGGCGATGAAAC 60
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 AAGGGAAAGTGGAGATGACGCCGGCGGTCGCCGCCGCGGCGGTTCTGCCGGTGGGGTTCC 120
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 GTTTCCGGCCGACGGACGAGGAGCTGGTGAGGCACTATCTGAAGGGAAAGATCGCTGGGC 180
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 GGAGCCACCCTGACCTCCTCCTCATCCCGGACGTGGACCTCTCCACCTGCGAGCCCTGGG 240
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 ATCTCCCGGCCATGTCCGTTATCAAGTCCGACGACCCCGAGTGGTTCTTCTTCGCCCCCC 300
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 GCGACCGCAAGTATCCCGGCGGCCACCGCTCCAACCGCTCCACCGCCGCCGGCTACTGGA 360
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 AGGCCACCGGCAAGGACCGCCTCATCCGCTCCCGCCCCGCCGGCCCCCTCATCGGCATCA 420
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 AGAAGACCCTCGTCTTCCACCGCGGCAGAGCTCCGCGGGGCCTCCGCACCGCCTGGATCA 480
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 TGCACGAGTACCGCACCACTGAGCCTCACTTCCAATCAGGCAAAAACGGTAGCTTCGTTC 540
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 TGTATCGCCTGTTTAACAAGCACGAACAAGATGATACCCATACCCCGGCCTCCAATTTGG 600
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 ACCAACAATTGTCCACGTCTTCTCAAGGCAATCCCCAAAATGGCACACCTGCTGTCCAAC 660
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 CGGCCCTCGCCTCAATAATGAAGGATCATCAGACCTTACCATCATCTGGTTTCAGCCAAC 720
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 TGACTGAAATACAAGATGCTAGTACATCTGTCCATGACAAAGAGCAAACTGTAGCCCATG 780
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 ACGATGCTTTTCTGGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACA 840
consensus_2883#1 -------------GGACGTGTTATCTCAACTTCCAGACCTAGAGCCTGAGCAAAGATACA 47
***********************************************
consensus_2883#0 ATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCA 900
consensus_2883#1 ATGGATTCCCTAATATCACCTCTCCAATTCGCCCTTACAGCGATCACCCTTTTGTCGGCA 107
************************************************************
consensus_2883#0 ATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGC 960
consensus_2883#1 ATCTGGGTGAGCAAGATCTTTCAGCGCATTTTGGCAGTACCTTGTCTGAGCAGGACCTGC 167
************************************************************
consensus_2883#0 AAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAAACGTAG 1020
consensus_2883#1 AAAGTTTGTTGTTTAGTCCAAATTACACCAAAATGGATAAGCACCCCACTGGAGACGTAG 227
***************************************************** ******
consensus_2883#0 AGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTT 1080
consensus_2883#1 AGTCTAATCCTACCGCGTCGTCCAACAATCCAAACAATAACACATTACTCATGGATAGTT 287
************************************************************
consensus_2883#0 GGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAGGTTAGAATATTCTAGAATTTAC 1140
consensus_2883#1 GGAGGAAGAATGATTCATATCAGATGCTTCTAATTCAG---------------------- 325
**************************************
consensus_2883#0 TCTTACACATTTTGACTAATCTCATGAGAACATTTTCTTCCCTTCTATTTCCTGTTCTAA 1200
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 ACAAAGCGTGCAGACAACACAGATGCTAC-TTGCTGTTCTTCTTCAATCAATGCACCACA 1259
consensus_2883#1 -------------ACAACACAGATGCTACCTTGCTGTTCTTCTTCAATCAATGCACCACA 372
**************** ******************************
consensus_2883#0 AACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAG 1319
consensus_2883#1 AACAGAAACAAGTGATGCTAATCTTGAAGCAAGAGCCCAGAGTAGCAGCATGGTCTACAG 432
************************************************************
consensus_2883#0 TGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCC 1379
consensus_2883#1 TGGAGTAGCCGAGGGCTCCCCCTTGTGCAACCAAGATCAACTACACTCCGCATTCAATCC 492
************************************************************
consensus_2883#0 TCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCC 1439
consensus_2883#1 TCACATGGAGTCACAAAAGAGTGGAGCCTTCTGTTGGGCTGGATTGTGGACCCCTTATCC 552
************************************************************
consensus_2883#0 CCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTT-CAGATG 1498
consensus_2883#1 CCAGCATTGGTTCGATACTATCGTAGAACCGGGCAGGAGTGGCATGACATTTTTCAGATG 612
***************************************************** ******
consensus_2883#0 CCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATC 1558
consensus_2883#1 CCTTGAAAGAACAAGGTCAGGAACAGGCACCTTCAATGAAGCACTTGACAGCTCAAGATC 672
************************************************************
consensus_2883#0 TCGTTGATCCACAACAAGGAACTGCTGCAAGAAGGATCC-GCCTTGTATGCTCTGTTGAG 1617
consensus_2883#1 TCGNTGATCCACAACAAGGAACTGCTGCAAGAANGATNCCGCCTTGTATGCTCTGNTGAG 732
*** ***************************** *** * *************** ****
consensus_2883#0 AGGGCATCAGTCTCTCAACCTGTATCCTCACATTTG-CAGAGTGAATATGAAGCTGGATC 1676
consensus_2883#1 AGGGCATCAGTCTCTCAANCTGTATCTTTACATTTGGCAGAGNGAATATGAAGCTGGATC 792
****************** ******* * ******* ***** *****************
consensus_2883#0 ATGCTGTAACACTCGCAATTCATCTAATAACAAGAAGGAAAGTGTCAGGAGTGAAGATGA 1736
consensus_2883#1 ATGCTGGAACACTCGCAATT-ATCTAATAACAGAAAGGAAAGGNTCAGGAGNGNANATNA 851
****** ************* *********** ******** ******* * * ** *
consensus_2883#0 AGCTGGATCATGTTGTAACACTGGAAGTTCATCTAATAACCACAGCGAGGAAAATGACGA 1796
consensus_2883#1 AACTGGATCATGTTGA-------------------------------------------- 867
* *************
consensus_2883#0 TGCAGCCTCCCAGATTATGGATGGAGAACCAATGCATATTCAGTGCAAAGAGGATACCCC 1856
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 TATTCAAGTGGATCATTCAGCGGAAGTTATGGACAAGCTCCAAGGCTTCTCCTTTCATGA 1916
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 AGAGATGTTGGTACATGCTAATCAGCCCCGTGGAACTAATCTAAAGCAGAGGCTGTTGAG 1976
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 AGTGGAGTCTAGAAATAGCAATGAGAATAATGTACCTTCGTTGGAGACACGAGAACAGCA 2036
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 GCATGCACCTCATATTCAGAAATGGACTAGCTCTGTTGTGCGACTAGGGTGGGGGTGGCA 2096
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 GTGGCCGGCTCTCTTTGTGATGGCCGGCTCTCTGCTTTTGTTGGTTGGTGTGTGGAAATC 2156
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 TCTGAATCACACTACCTGACTAATGTAAATAAATGGTCGCTTAGCTTAAGCTTGGGAGCC 2216
consensus_2883#1 ------------------------------------------------------------
consensus_2883#0 TCATATATACTACTACATATGTTCTTTGGAAAGTACTGCAGGTAAC 2262
consensus_2883#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||