These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2888#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1802 fasta sequence [TGCCGCCGAGAACGGACAACGCGAGCACGCAAGCAGCGCCCGCGCCTCCCCCGCCATTGCCGCGAGCCGGCAACGGCAGCGGCTGGCTGCCACGGCGGTACACGGAGCGCGCCGCGCCGACGGTGATCAGGGCCTCGGCGGGGGCAGTCCACCCGGAGGAGTCGCCGGCGCGCGCCTCGCCGGAGGAGAAGGCCGCCGACGCGGCCGCTCGGCCGAAGCTGAAGCCGCTGCACTGGGACAAGGTGCGGCCGGCGAGCTCCGGCCGGCCGACGGTGTGGGACCAGCTGAAGGCGAGCTCATTCCGAGTGAACGAAGAGATGATCGAGACGCTCTTCGTCTCCAACTCGACGAGGAGAGCATCCAAGAATGGAGTCAAGGAGGCAAATGCAGCTTGCTGCAACCAGGAGAACAAGGTGCTGGACCCGAAGAAATCGCAGAACATCGCGATCATGCTGAGGGCGCTCGACGCGACGAAGGAGGAAGTCTGCAAGGCTCTCCTGGATGGCCAGGCAGAGAGCCTTGGAACTGAGCTGCTGGAGACACTTCTAAAGATGGCTCCTAGCAGAGAAGAGGAAATCAAGCTGAAGGAATTCAGGGAGGATGCCGTATCTAAGCTCGGCCCTGCCGAAAGCTTCCTCAAGGCGGTGCTTGCGATACCATTTGCGTTCAAGAGGGTCGAAGCAATGCTCTACATCGCCAACTTCGATTCGGAGGTTGACTACCTCAAGACCTCCTTCAAAACTCTTGAGGCAGCATGTGAAGAGCTGAGGGGCAGCAGGTTGTTCCACAAGATCTTAGATGCAGTGCTGAAGACCGGTAACCGCATGAACACTGGCACCAACCGCGGAAATGCAAGCGCCTTCAAGCTTGATGCCCTCCTCAAGTTAGTCGACGTAAAGGGTGCAGATGGCAAGACAACCCTTCTGCATTTTGTTATCGAAGAGATTGTCAAGTCCGAAGGTGCCAGCATCTTGGCCACTGGCCAAACATCCAACCAGGGGAGTGCCATTGCAGATGATTTCCAGTGCAAGAAGGTTGGCCTCAGAATTGTTGCTAGCCTTGGTGGTGAGCTCGGCAATGTCAAGAAGGCAGCTGGAATGGACTCAGACACACTGGCCAGCTGCGTTGCCAAGCTTTCTGCTGGTGTTAGCAAGATCAGTGAGGCCCTGCAGCTGAACCAGCAGCTCGGTTCCGATGATCATTGCAAGAGATTCCGCGCCTCAATCGGTGAGTTCCTGCAGAAGGCCGAAGCTGAGATCACCGCAGTGCAGGCTCAGGAGAGCCTCGCCCTCTCCCTCGTCAGGGAGACGACCGAGTTCTTCCACGGTGACTCGGTGAAGGAGGAAGGGCACCCTCTGAGAATCTTCATGGTGGTGCGCGACTTCCTCACCGTTCTTGATCATGTCTGCAAGGATGTCGGCAGGATGAACGAAAGAACAGCGATTGGATCTTCGCTCCGGCTGGAGAATGCACCTGTTCTTGCGAGGTTCAACGCAGTCCAACCCAGTAGCTCCGAGGAGGAGAGCTCATCGTCCTAGCCGTTGGAGCCTGCATGTTATTGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGTAGCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAAGCATCATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCATTGTACATGATTCAGCATGCTAAGAATCACTAGACAGGAGCTTTTGTGATCATGCTGAATGCTTGAATCTCGTGATAAAAGTAAAG] [+] EMBL AK101828 [TGCCGCCGAGAACGGACAACGCGAGCACGCAAGCAGCGCCCGCGCCTCCCCCGCCATTGCCGCGAGCCGGCAACGGCAGCGGCTGGCTGCCACGGCGGTACACGGAGCGCGCCGCGCCGACGGTGATCAGGGCCTCGGCGGGGGCAGTCCACCCGGAGGAGTCGCCGGCGCGCGCCTCGCCGGAGGAGAAGGCCGCCGACGCGGCCGCTCGGCCGAAGCTGAAGCCGCTGCACTGGGACAAGGTGCGGCCGGCGAGCTCCGGCCGGCCGACGGTGTGGGACCAGCTGAAGGCGAGCTCATTCCGAGTGAACGAAGAGATGATCGAGACGCTCTTCGTCTCCAACTCGACGAGGAGAGCATCCAAGAATGGAGTCAAGGAGGCAAATGCAGCTTGCTGCAACCAGGAGAACAAGGTGCTGGACCCGAAGAAATCGCAGAACATCGCGATCATGCTGAGGGCGCTCGACGCGACGAAGGAGGAAGTCTGCAAGGCTCTCCTGGATGGCCAGGCAGAGAGCCTTGGAACTGAGCTGCTGGAGACACTTCTAAAGATGGCTCCTAGCAGAGAAGAGGAAATCAAGCTGAAGGAATTCAGGGAGGATGCCGTATCTAAGCTCGGCCCTGCCGAAAGCTTCCTCAAGGCGGTGCTTGCGATACCATTTGCGTTCAAGAGGGTCGAAGCAATGCTCTACATCGCCAACTTCGATTCGGAGGTTGACTACCTCAAGACCTCCTTCAAAACTCTTGAGGCAGCATGTGAAGAGCTGAGGGGCAGCAGGTTGTTCCACAAGATCTTAGATGCAGTGCTGAAGACCGGTAACCGCATGAACACTGGCACCAACCGCGGAAATGCAAGCGCCTTCAAGCTTGATGCCCTCCTCAAGTTAGTCGACGTAAAGGGTGCAGATGGCAAGACAACCCTTCTGCATTTTGTTATCGAAGAGATTGTCAAGTCCGAAGGTGCCAGCATCTTGGCCACTGGCCAAACATCCAACCAGGGGAGTGCCATTGCAGATGATTTCCAGTGCAAGAAGGTTGGCCTCAGAATTGTTGCTAGCCTTGGTGGTGAGCTCGGCAATGTCAAGAAGGCAGCTGGAATGGACTCAGACACACTGGCCAGCTGCGTTGCCAAGCTTTCTGCTGGTGTTAGCAAGATCAGTGAGGCCCTGCAGCTGAACCAGCAGCTCGGTTCCGATGATCATTGCAAGAGATTCCGCGCCTCAATCGGTGAGTTCCTGCAGAAGGCCGAAGCTGAGATCACCGCAGTGCAGGCTCAGGAGAGCCTCGCCCTCTCCCTCGTCAGGGAGACGACCGAGTTCTTCCACGGTGACTCGGTGAAGGAGGAAGGGCACCCTCTGAGAATCTTCATGGTGGTGCGCGACTTCCTCACCGTTCTTGATCATGTCTGCAAGGATGTCGGCAGGATGAACGAAAGAACAGCGATTGGATCTTCGCTCCGGCTGGAGAATGCACCTGTTCTTGCGAGGTTCAACGCAGTCCAACCCAGTAGCTCCGAGGAGGAGAGCTCATCGTCCTAGCCGTTGGAGCCTGCATGTTATTGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGTAGCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAAGCATCATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCATTGTACATGATTCAGCATGCTAAGAATCACTAGACAGGAGCTTTTGTGATCATGCTGAATGCTTGAATCTCGTGATAAAAGTAAAG] consensusID : consensus_2888#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [TGTTCTTNCGAGGTTCAACGCAGTCCAAACCCAGTANCTCCGAGGAGGAGAGCTCATCGTCCTANNCGTTGGAGCCTCCNTGTTATTGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGTANCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAANCATCATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCNTTGTAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU161354 [TGTTCTTNCGAGGTTCAACGCAGTCCAAACCCAGTANCTCCGAGGAGGAGAGCTCATCGTCCTANNCGTTGGAGCCTCCNTGTTATTGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGTANCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAANCATCATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCNTTGTAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2888#0 TGCCGCCGAGAACGGACAACGCGAGCACGCAAGCAGCGCCCGCGCCTCCCCCGCCATTGC 60 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 CGCGAGCCGGCAACGGCAGCGGCTGGCTGCCACGGCGGTACACGGAGCGCGCCGCGCCGA 120 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 CGGTGATCAGGGCCTCGGCGGGGGCAGTCCACCCGGAGGAGTCGCCGGCGCGCGCCTCGC 180 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 CGGAGGAGAAGGCCGCCGACGCGGCCGCTCGGCCGAAGCTGAAGCCGCTGCACTGGGACA 240 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 AGGTGCGGCCGGCGAGCTCCGGCCGGCCGACGGTGTGGGACCAGCTGAAGGCGAGCTCAT 300 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 TCCGAGTGAACGAAGAGATGATCGAGACGCTCTTCGTCTCCAACTCGACGAGGAGAGCAT 360 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 CCAAGAATGGAGTCAAGGAGGCAAATGCAGCTTGCTGCAACCAGGAGAACAAGGTGCTGG 420 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 ACCCGAAGAAATCGCAGAACATCGCGATCATGCTGAGGGCGCTCGACGCGACGAAGGAGG 480 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 AAGTCTGCAAGGCTCTCCTGGATGGCCAGGCAGAGAGCCTTGGAACTGAGCTGCTGGAGA 540 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 CACTTCTAAAGATGGCTCCTAGCAGAGAAGAGGAAATCAAGCTGAAGGAATTCAGGGAGG 600 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 ATGCCGTATCTAAGCTCGGCCCTGCCGAAAGCTTCCTCAAGGCGGTGCTTGCGATACCAT 660 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 TTGCGTTCAAGAGGGTCGAAGCAATGCTCTACATCGCCAACTTCGATTCGGAGGTTGACT 720 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 ACCTCAAGACCTCCTTCAAAACTCTTGAGGCAGCATGTGAAGAGCTGAGGGGCAGCAGGT 780 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 TGTTCCACAAGATCTTAGATGCAGTGCTGAAGACCGGTAACCGCATGAACACTGGCACCA 840 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 ACCGCGGAAATGCAAGCGCCTTCAAGCTTGATGCCCTCCTCAAGTTAGTCGACGTAAAGG 900 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 GTGCAGATGGCAAGACAACCCTTCTGCATTTTGTTATCGAAGAGATTGTCAAGTCCGAAG 960 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 GTGCCAGCATCTTGGCCACTGGCCAAACATCCAACCAGGGGAGTGCCATTGCAGATGATT 1020 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 TCCAGTGCAAGAAGGTTGGCCTCAGAATTGTTGCTAGCCTTGGTGGTGAGCTCGGCAATG 1080 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 TCAAGAAGGCAGCTGGAATGGACTCAGACACACTGGCCAGCTGCGTTGCCAAGCTTTCTG 1140 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 CTGGTGTTAGCAAGATCAGTGAGGCCCTGCAGCTGAACCAGCAGCTCGGTTCCGATGATC 1200 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 ATTGCAAGAGATTCCGCGCCTCAATCGGTGAGTTCCTGCAGAAGGCCGAAGCTGAGATCA 1260 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 CCGCAGTGCAGGCTCAGGAGAGCCTCGCCCTCTCCCTCGTCAGGGAGACGACCGAGTTCT 1320 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 TCCACGGTGACTCGGTGAAGGAGGAAGGGCACCCTCTGAGAATCTTCATGGTGGTGCGCG 1380 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 ACTTCCTCACCGTTCTTGATCATGTCTGCAAGGATGTCGGCAGGATGAACGAAAGAACAG 1440 consensus_2888#1 ------------------------------------------------------------ consensus_2888#0 CGATTGGATCTTCGCTCCGGCTGGAGAATGCACCTGTTCTTGCGAGGTTCAACGCAGTCC 1500 consensus_2888#1 ----------------------------------TGTTCTTNCGAGGTTCAACGCAGTCC 26 ******* ****************** consensus_2888#0 AA-CCCAGTAGCTCCGAGGAGGAGAGCTCATCGTCCTAGCCGTTGGAGCCTGCATGTTAT 1559 consensus_2888#1 AAACCCAGTANCTCCGAGGAGGAGAGCTCATCGTCCTANNCGTTGGAGCCTCCNTGTTAT 86 ** ******* *************************** *********** * ****** consensus_2888#0 TGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGT 1619 consensus_2888#1 TGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGT 146 ************************************************************ consensus_2888#0 AGCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAAGCAT 1679 consensus_2888#1 ANCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAANCAT 206 * ****************************************************** *** consensus_2888#0 CATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCATTGTACATGATTCAGCATGCTAA 1739 consensus_2888#1 CATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCNTTGTAAAAAAAAAAAAAAAAAAA 266 ************************************ ***** * * * * ** consensus_2888#0 GAATCACTAGACAGGAGCTTTTGTGATCATGCTGAATGCTTGAATCTCGTGATAAAAGTA 1799 consensus_2888#1 AAAAA------------------------------------------------------- 271 ** consensus_2888#0 AAG 1802 consensus_2888#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||