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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1677 fasta sequence
[CCTTCTCCGCGCCGCCCGCTCGATCGATCGCCATGGAGGAGAAGGGGATGGGGAAGCAGCGGTGGGAGAAGGTGCTCCTCCAGGCCGCCTTCGACGGCAACCTTCGCCTCCTCAGGAAGATGGCGCGCGGGCTGGTCACGACGGGGCGCGGCCGCGGCGAGGCGGACGTCCTGGCGGCCGTGGCGGACGGCGGCAGCGGGAGCCGCGCGCTGCACCTGGCGGCCACCGAGGGGAGGATGGACGTCCTCACGTACCTCGTCGAGGACCTCCGCCTCGACGTCAACCAAACCAACGACAGAGGTGAAACTCCACTATTCCTTTCTGCGTTTTTTGGGAGAACTGCATCTACAAGATATCTGCTTGATCATGGTGCTGATCCAATGATTGTTGGTAAATCAGGATCACCTCTTCATGCGGCTGCCGGGAAAGGACACTGTGAAATAGTAGAATTGCTGCTGTCAAGAGGGATTGGTATTGTTTTTGATTCTCTCTATGGGACCCCGTTGCATACGGCTGCTGCTCATGGTCAATGTAGCACCATGAAGATATTATTGGACCATCATGCAGATCCTGATAAGGTTTTCAATCTTGATGATGCCCCATTGAATATGGCTATATCTTCTAAATCATTGGAATGCGTCAAACTGCTCATCCAAGCTGGGGCTGATGTGAACTTTAGAGACTCCAATGGTGCTACTTATGTTATGATGGCAGCAAATTATGGTTTTTCTGGCATCATGAAATGCCTATTAGATGCTGGTGCTAATCCTAATATTCCGGACCAATTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTGTTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCCAGATTGGAGTATTGATGGAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAAAGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTACTTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAACTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTGCTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTATCGGCAAGGAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCTTGAAGCTGGACCCAGCAAATGTTGATATTGAGAATGCTCTAAGGGCAGCGCTTCAGGCCGTGAAGAATGACCGGTGCGTTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGTTGAGCTTCTGCTCTGTTGCTAGTTCCAGTACATCTTTTTGCCACGAAAACTCTTGTGCTTTTGTGAACTAAAGTTGGCACGGAAACTGGAGTGTTATTTACCCATTTTAATATTTTTTACGCCTATCCACTTGTAGCTTAGTTTGTAAGTGTGGCAGCTTAGTTGGGGTGGTAGTCATTGTTCTTCCTGCCTGCTTAAATAGCTCTGCGTGACATGCCCACATCATCTGATGGATTTGTGGCCGTCCTTGCTGTAAATTGGACATGCAAATCCTGTTTATAAGGGGCTCTAACTCACTGA]
[+] EMBL AK068333 [CCTTCTCCGCGCCGCCCGCTCGATCGATCGCCATGGAGGAGAAGGGGATGGGGAAGCAGCGGTGGGAGAAGGTGCTCCTCCAGGCCGCCTTCGACGGCAACCTTCGCCTCCTCAGGAAGATGGCGCGCGGGCTGGTCACGACGGGGCGCGGCCGCGGCGAGGCGGACGTCCTGGCGGCCGTGGCGGACGGCGGCAGCGGGAGCCGCGCGCTGCACCTGGCGGCCACCGAGGGGAGGATGGACGTCCTCACGTACCTCGTCGAGGACCTCCGCCTCGACGTCAACCAAACCAACGACAGAGGTGAAACTCCACTATTCCTTTCTGCGTTTTTTGGGAGAACTGCATCTACAAGATATCTGCTTGATCATGGTGCTGATCCAATGATTGTTGGTAAATCAGGATCACCTCTTCATGCGGCTGCCGGGAAAGGACACTGTGAAATAGTAGAATTGCTGCTGTCAAGAGGGATTGGTATTGTTTTTGATTCTCTCTATGGGACCCCGTTGCATACGGCTGCTGCTCATGGTCAATGTAGCACCATGAAGATATTATTGGACCATCATGCAGATCCTGATAAGGTTTTCAATCTTGATGATGCCCCATTGAATATGGCTATATCTTCTAAATCATTGGAATGCGTCAAACTGCTCATCCAAGCTGGGGCTGATGTGAACTTTAGAGACTCCAATGGTGCTACTTATGTTATGATGGCAGCAAATTATGGTTTTTCTGGCATCATGAAATGCCTATTAGATGCTGGTGCTAATCCTAATATTCCGGACCAATTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTGTTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCCAGATTGGAGTATTGATGGAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAAAGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTACTTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAACTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTGCTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTATCGGCAAGGAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCTTGAAGCTGGACCCAGCAAATGTTGATATTGAGAATGCTCTAAGGGCAGCGCTTCAGGCCGTGAAGAATGACCGGTGCGTTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGTTGAGCTTCTGCTCTGTTGCTAGTTCCAGTACATCTTTTTGCCACGAAAACTCTTGTGCTTTTGTGAACTAAAGTTGGCACGGAAACTGGAGTGTTATTTACCCATTTTAATATTTTTTACGCCTATCCACTTGTAGCTTAGTTTGTAAGTGTGGCAGCTTAGTTGGGGTGGTAGTCATTGTTCTTCCTGCCTGCTTAAATAGCTCTGCGTGACATGCCCACATCATCTGATGGATTTGTGGCCGTCCTTGCTGTAAATTGGACATGCAAATCCTGTTTATAAGGGGCTCTAACTCACTGA]
consensusID : consensus_2894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 803 fasta sequence
[ATACTTCTAATTTGGTTCAAATTCTTTGCAATTATATTTGGCATTTGTACTAGTCATGATATATTATGAAAGAACTTTTTTTTTCATCTTGCAGTTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTGTTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCTAGATTGGAGTATTGATGGAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAAAGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTACTTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAACTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTGCTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTGTCGGCAAGGAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCTTGAAGCTGGACCCAGCAAATGNTGATATTGAGAATGCTCTAAGGCAGCGCTTCAGGCCGTGAAGAATGAGCGGTGCGNTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGTTGAGCTTCTGCTCTGGTGCTAGNTNCAGNACATCTTTTTTGNCACGAAAACTCTTGNGCTTTTGNGAACTAAAGNTGGCACGGAAACTGGAGNGGTATTTANCCATTTTAATATTTTT]
[+] EMBL CA764424 [ATACTTCTAATTTGGTTCAAATTCTTTGCAATTATATTTGGCATTTGTACTAGTCATGATATATTATGAAAGAACTTTTTTTTTCATCTTGCAGTTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTGTTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCTAGATTGGAGTATTGATGGAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAAAGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTACTTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAACTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTGCTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTGTCGGCAAGGAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCTTGAAGCTGGACCCAGCAAATGNTGATATTGAGAATGCTCTAAGGCAGCGCTTCAGGCCGTGAAGAATGAGCGGTGCGNTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGTTGAGCTTCTGCTCTGGTGCTAGNTNCAGNACATCTTTTTTGNCACGAAAACTCTTGNGCTTTTGNGAACTAAAGNTGGCACGGAAACTGGAGNGGTATTTANCCATTTTAATATTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2894#0 CCTTCTCCGCGCCGCCCGCTCGATCGATCGCCATGGAGGAGAAGGGGATGGGGAAGCAGC 60
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 GGTGGGAGAAGGTGCTCCTCCAGGCCGCCTTCGACGGCAACCTTCGCCTCCTCAGGAAGA 120
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 TGGCGCGCGGGCTGGTCACGACGGGGCGCGGCCGCGGCGAGGCGGACGTCCTGGCGGCCG 180
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 TGGCGGACGGCGGCAGCGGGAGCCGCGCGCTGCACCTGGCGGCCACCGAGGGGAGGATGG 240
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 ACGTCCTCACGTACCTCGTCGAGGACCTCCGCCTCGACGTCAACCAAACCAACGACAGAG 300
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 GTGAAACTCCACTATTCCTTTCTGCGTTTTTTGGGAGAACTGCATCTACAAGATATCTGC 360
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 TTGATCATGGTGCTGATCCAATGATTGTTGGTAAATCAGGATCACCTCTTCATGCGGCTG 420
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 CCGGGAAAGGACACTGTGAAATAGTAGAATTGCTGCTGTCAAGAGGGATTGGTATTGTTT 480
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 TTGATTCTCTCTATGGGACCCCGTTGCATACGGCTGCTGCTCATGGTCAATGTAGCACCA 540
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 TGAAGATATTATTGGACCATCATGCAGATCCTGATAAGGTTTTCAATCTTGATGATGCCC 600
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 CATTGAATATGGCTATATCTTCTAAATCATTGGAATGCGTCAAACTGCTCATCCAAGCTG 660
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 GGGCTGATGTGAACTTTAGAGACTCCAATGGTGCTACTTATGTTATGATGGCAGCAAATT 720
consensus_2894#1 ---------------------------------ATACTTCTAATTTGGTTCAAATTCTTT 27
***** * * ** * * **
consensus_2894#0 ATGGTTTT-TCTGGCATCATGAAATGCCTATTAGATGCTGGTGCTAATCCTAATATTCCG 779
consensus_2894#1 GCAATTATATTTGGCATT-TGTACTAGTCATGATATATTATGAAAGAACTTTTTTTTTCA 86
** * * ****** ** * * ** * ** * * * * * ** *
consensus_2894#0 GAC--CAATTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTG 837
consensus_2894#1 TCTTGCAGTTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTG 146
** ****************************************************
consensus_2894#0 TTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCCAGATTGGAGTATTGATG 897
consensus_2894#1 TTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCTAGATTGGAGTATTGATG 206
****************************************** *****************
consensus_2894#0 GAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAA 957
consensus_2894#1 GAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAA 266
************************************************************
consensus_2894#0 AGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTAC 1017
consensus_2894#1 AGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTAC 326
************************************************************
consensus_2894#0 TTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAA 1077
consensus_2894#1 TTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAA 386
************************************************************
consensus_2894#0 CTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTG 1137
consensus_2894#1 CTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTG 446
************************************************************
consensus_2894#0 CTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTATCGGCAAG 1197
consensus_2894#1 CTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTGTCGGCAAG 506
*************************************************** ********
consensus_2894#0 GAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCT 1257
consensus_2894#1 GAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCT 566
************************************************************
consensus_2894#0 TGAAGCTGGACCCAGCAAATGTTGATATTGAGAATGCTCTAAGGGCAGCGCTTCAGGCCG 1317
consensus_2894#1 TGAAGCTGGACCCAGCAAATGNTGATATTGAGAATGCTCTAAGG-CAGCGCTTCAGGCCG 625
********************* ********************** ***************
consensus_2894#0 TGAAGAATGACCGGTGCGTTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGT 1377
consensus_2894#1 TGAAGAATGAGCGGTGCGNTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGT 685
********** ******* *****************************************
consensus_2894#0 TGAGCTTCTGCTCTGTTGCTAGTTCCAGTACATCTTTTT-GCCACGAAAACTCTTGTGCT 1436
consensus_2894#1 TGAGCTTCTGCTCTGGTGCTAGNTNCAGNACATCTTTTTTGNCACGAAAACTCTTGNGCT 745
*************** ****** * *** ********** * ************** ***
consensus_2894#0 TTTGTGAACTAAAGTTGGCACGGAAACTGGAGTGTTATTTACCCATTTTAATATTTTTTA 1496
consensus_2894#1 TTTGNGAACTAAAGNTGGCACGGAAACTGGAGNGGTATTTANCCATTTTAATATTTTT-- 803
**** ********* ***************** * ****** ****************
consensus_2894#0 CGCCTATCCACTTGTAGCTTAGTTTGTAAGTGTGGCAGCTTAGTTGGGGTGGTAGTCATT 1556
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 GTTCTTCCTGCCTGCTTAAATAGCTCTGCGTGACATGCCCACATCATCTGATGGATTTGT 1616
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 GGCCGTCCTTGCTGTAAATTGGACATGCAAATCCTGTTTATAAGGGGCTCTAACTCACTG 1676
consensus_2894#1 ------------------------------------------------------------
consensus_2894#0 A 1677
consensus_2894#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||