|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2024 fasta sequence
[TGAGGTGATCGACGCTATCTGTCCCTACCGGAAGGAAGGGTATGGATTCGTCATTCACCTCAGGAATGACATACTCTGTGCCGTTTGGATGAACATGAACATACCTTGCAAGTGTGCCACACGGCATGTCCTAATCACAACTTTCCGAATTGAATGTCAGCTCGATAAGGATGATTTTGAACCTAAAGTCCTCGAGGTCCTACACTCCACCTGCCGTAGAATTGGTATGCTTCGAAGCAAAGCACCCGGGCATGAGTCCTATGACAGATTGTGTTTCATACAGGAATATCTGGACGATTCATCTGAGATTGATCCTTCGATAGCTTTGATGATGGGAGCAAGGTCCAGCTACTCCGAAGCTGATGAAGTTGACCCAAAGATGCTGCTTTGTTGTAGGGAGTTTTTGAGCATAAGAGAACTTAGTTCATGTGTAGTTCTTGAAGAATGTAGGGTAATGGTCAAATCAGAATTCTATTTCATTTGTCAGTCGGGTCAACACACATATTTATATAAGATCTCTACTGCAAGAGGAAAGTTGACATGCCATGAAACCATTCTAGAAGCAGAACACTCTTTAGAGACAATTAGGAATGGGGATGTCGGAATAGATGATCCGCCTGCATGGCATTTTGTGAACTATGGAGTGAAGCTTTATGTGATCCCCTCTGTTCCACAGTACAATCACTATTATGAGGTGGATGTCTACAGAAACTCCTCTCTCATCTTGGAAAGCAAACGGCCTAGTATTTGTTTCTCTGCAGTTTGTCGAGTTGGGCAACGGATTGTGGCATTGGGTGATACTTTGGAGGCCGTGTATATTCTTGATCTCCAAAATGTGGAGTGGGTCTTTTGCAAGACATCGTCGACGTTTTTAGACTTAAGAAAGGAAATCAAGATTTCTGGATTTGTAGACCTTGGTAATGATTCAATGATGATTTCAGAAGTTGATGCATGTGAGTGTTTTATTCTAGATCTTAAGAAGAAGCAATGGTTTGTTGTAGAGCCGCCTAATGGTGACATCTGGCAGTACTGTGTTGGTCTGTTGAGCGGAACATGTATGTTCATTGAGGGCTTTATATATACCTGCTCAGATGGGGAAATGGTTGCATATGAGTTGATCGAGAAAGATGGTTTATACCATTGGGATGCACCTGTCATAATGAGGTTACCATGGAAGAAGTTCTCTAACAGGAAATTTATGGCGTTCTGTCCAATTTGTAAAGATGTCATACATGATGACATTGCATTCAGTATTGTGGAGGCGCGTCCGTTTGGTTCAAGTCATACAGTAGCTACTACAATAGTACAAGTGAAGCTTCAGGAAACGACACGAGGATCCAAAAGACCAGTTGGAATTGCTCATGCAGATATTTCAACGTCATCGATTGAACAAAATGGATGGATCTTATCCAACTACGCATTTACTTTATAAGCAACTTTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCTGACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACGACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGCCTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGCGGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAAGCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGCGTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCCCAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTCGTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTCGCCGCCGCGGCCTGCAATTGCAACGGTTGAATTCTCGCACGCGCGCGGGA]
[+] EMBL AK105279 [TGAGGTGATCGACGCTATCTGTCCCTACCGGAAGGAAGGGTATGGATTCGTCATTCACCTCAGGAATGACATACTCTGTGCCGTTTGGATGAACATGAACATACCTTGCAAGTGTGCCACACGGCATGTCCTAATCACAACTTTCCGAATTGAATGTCAGCTCGATAAGGATGATTTTGAACCTAAAGTCCTCGAGGTCCTACACTCCACCTGCCGTAGAATTGGTATGCTTCGAAGCAAAGCACCCGGGCATGAGTCCTATGACAGATTGTGTTTCATACAGGAATATCTGGACGATTCATCTGAGATTGATCCTTCGATAGCTTTGATGATGGGAGCAAGGTCCAGCTACTCCGAAGCTGATGAAGTTGACCCAAAGATGCTGCTTTGTTGTAGGGAGTTTTTGAGCATAAGAGAACTTAGTTCATGTGTAGTTCTTGAAGAATGTAGGGTAATGGTCAAATCAGAATTCTATTTCATTTGTCAGTCGGGTCAACACACATATTTATATAAGATCTCTACTGCAAGAGGAAAGTTGACATGCCATGAAACCATTCTAGAAGCAGAACACTCTTTAGAGACAATTAGGAATGGGGATGTCGGAATAGATGATCCGCCTGCATGGCATTTTGTGAACTATGGAGTGAAGCTTTATGTGATCCCCTCTGTTCCACAGTACAATCACTATTATGAGGTGGATGTCTACAGAAACTCCTCTCTCATCTTGGAAAGCAAACGGCCTAGTATTTGTTTCTCTGCAGTTTGTCGAGTTGGGCAACGGATTGTGGCATTGGGTGATACTTTGGAGGCCGTGTATATTCTTGATCTCCAAAATGTGGAGTGGGTCTTTTGCAAGACATCGTCGACGTTTTTAGACTTAAGAAAGGAAATCAAGATTTCTGGATTTGTAGACCTTGGTAATGATTCAATGATGATTTCAGAAGTTGATGCATGTGAGTGTTTTATTCTAGATCTTAAGAAGAAGCAATGGTTTGTTGTAGAGCCGCCTAATGGTGACATCTGGCAGTACTGTGTTGGTCTGTTGAGCGGAACATGTATGTTCATTGAGGGCTTTATATATACCTGCTCAGATGGGGAAATGGTTGCATATGAGTTGATCGAGAAAGATGGTTTATACCATTGGGATGCACCTGTCATAATGAGGTTACCATGGAAGAAGTTCTCTAACAGGAAATTTATGGCGTTCTGTCCAATTTGTAAAGATGTCATACATGATGACATTGCATTCAGTATTGTGGAGGCGCGTCCGTTTGGTTCAAGTCATACAGTAGCTACTACAATAGTACAAGTGAAGCTTCAGGAAACGACACGAGGATCCAAAAGACCAGTTGGAATTGCTCATGCAGATATTTCAACGTCATCGATTGAACAAAATGGATGGATCTTATCCAACTACGCATTTACTTTATAAGCAACTTTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCTGACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACGACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGCCTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGCGGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAAGCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGCGTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCCCAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTCGTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTCGCCGCCGCGGCCTGCAATTGCAACGGTTGAATTCTCGCACGCGCGCGGGA]
consensusID : consensus_2902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 918 fasta sequence
[AACTACGCATTTACTTTATAAGCAACTGTAAGGTTTTTGCAACAGTGAAATCTATGATACTTGATTGCTTTTCTATTCTGTTTTATCTGATTTAACATATGCATTAATATATTTGCAGTTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCTGACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACGACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGCCTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGCGGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAAGCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGCGTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCCCAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTCGTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTCGCCGCCGCGGCCTGACACGCTCCCCGTCGATCTCCGCGCCTTCTTCGCAATCTCCATGTCAACCGCCCCGGCAACGGGAGCGATCCCGAGCTAAGCGTCCGCAACGCACGATCGGGAAGAACGCAAATGCCGCCTGCGCCGAGCAGCTGGCCTAGCCTGGCTGTGCACGCGGCTGTCGCCGTCGCCGCCGCCGCCGCCGCTACTCCACGACGACGAGCAAGCAGATGAGATTTTGTGGGGGGAGTCTCTCGCTTCCGGTTTGAG]
[-] EMBL AK108497 [AACTACGCATTTACTTTATAAGCAACTGTAAGGTTTTTGCAACAGTGAAATCTATGATACTTGATTGCTTTTCTATTCTGTTTTATCTGATTTAACATATGCATTAATATATTTGCAGTTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCTGACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACGACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGCCTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGCGGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAAGCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGCGTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCCCAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTCGTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTCGCCGCCGCGGCCTGACACGCTCCCCGTCGATCTCCGCGCCTTCTTCGCAATCTCCATGTCAACCGCCCCGGCAACGGGAGCGATCCCGAGCTAAGCGTCCGCAACGCACGATCGGGAAGAACGCAAATGCCGCCTGCGCCGAGCAGCTGGCCTAGCCTGGCTGTGCACGCGGCTGTCGCCGTCGCCGCCGCCGCCGCCGCTACTCCACGACGACGAGCAAGCAGATGAGATTTTGTGGGGGGAGTCTCTCGCTTCCGGTTTGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2902#0 TGAGGTGATCGACGCTATCTGTCCCTACCGGAAGGAAGGGTATGGATTCGTCATTCACCT 60
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 CAGGAATGACATACTCTGTGCCGTTTGGATGAACATGAACATACCTTGCAAGTGTGCCAC 120
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 ACGGCATGTCCTAATCACAACTTTCCGAATTGAATGTCAGCTCGATAAGGATGATTTTGA 180
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 ACCTAAAGTCCTCGAGGTCCTACACTCCACCTGCCGTAGAATTGGTATGCTTCGAAGCAA 240
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 AGCACCCGGGCATGAGTCCTATGACAGATTGTGTTTCATACAGGAATATCTGGACGATTC 300
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 ATCTGAGATTGATCCTTCGATAGCTTTGATGATGGGAGCAAGGTCCAGCTACTCCGAAGC 360
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 TGATGAAGTTGACCCAAAGATGCTGCTTTGTTGTAGGGAGTTTTTGAGCATAAGAGAACT 420
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 TAGTTCATGTGTAGTTCTTGAAGAATGTAGGGTAATGGTCAAATCAGAATTCTATTTCAT 480
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 TTGTCAGTCGGGTCAACACACATATTTATATAAGATCTCTACTGCAAGAGGAAAGTTGAC 540
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 ATGCCATGAAACCATTCTAGAAGCAGAACACTCTTTAGAGACAATTAGGAATGGGGATGT 600
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 CGGAATAGATGATCCGCCTGCATGGCATTTTGTGAACTATGGAGTGAAGCTTTATGTGAT 660
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 CCCCTCTGTTCCACAGTACAATCACTATTATGAGGTGGATGTCTACAGAAACTCCTCTCT 720
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 CATCTTGGAAAGCAAACGGCCTAGTATTTGTTTCTCTGCAGTTTGTCGAGTTGGGCAACG 780
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 GATTGTGGCATTGGGTGATACTTTGGAGGCCGTGTATATTCTTGATCTCCAAAATGTGGA 840
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 GTGGGTCTTTTGCAAGACATCGTCGACGTTTTTAGACTTAAGAAAGGAAATCAAGATTTC 900
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 TGGATTTGTAGACCTTGGTAATGATTCAATGATGATTTCAGAAGTTGATGCATGTGAGTG 960
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 TTTTATTCTAGATCTTAAGAAGAAGCAATGGTTTGTTGTAGAGCCGCCTAATGGTGACAT 1020
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 CTGGCAGTACTGTGTTGGTCTGTTGAGCGGAACATGTATGTTCATTGAGGGCTTTATATA 1080
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 TACCTGCTCAGATGGGGAAATGGTTGCATATGAGTTGATCGAGAAAGATGGTTTATACCA 1140
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 TTGGGATGCACCTGTCATAATGAGGTTACCATGGAAGAAGTTCTCTAACAGGAAATTTAT 1200
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 GGCGTTCTGTCCAATTTGTAAAGATGTCATACATGATGACATTGCATTCAGTATTGTGGA 1260
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 GGCGCGTCCGTTTGGTTCAAGTCATACAGTAGCTACTACAATAGTACAAGTGAAGCTTCA 1320
consensus_2902#1 ------------------------------------------------------------
consensus_2902#0 GGAAACGACACGAGGATCCAAAAGACCAGT-TGGAATTGCTCATGCAGATATTTCAACGT 1379
consensus_2902#1 ---AACTACGCATTTACTTTATAAGCAACTGTAAGGTTTTTGCAACAGTGAAATCTATGA 57
*** ** * * * * * * * * ** * *** * ** * *
consensus_2902#0 CA-TCGATTGAA---CAAAATGGATGGATCTTATCCAAC-TACGCATTTACTTTATAAGC 1434
consensus_2902#1 TACTTGATTGCTTTTCTATTCTGTTTTATCTGATTTAACATATGCATTAA-TATATTTGC 116
* * ***** * * * * **** ** *** ** ***** * * *** **
consensus_2902#0 AACTTTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCT 1494
consensus_2902#1 AG--TTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCT 174
* ********************************************************
consensus_2902#0 GACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACG 1554
consensus_2902#1 GACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACG 234
************************************************************
consensus_2902#0 ACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGC 1614
consensus_2902#1 ACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGC 294
************************************************************
consensus_2902#0 CTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGC 1674
consensus_2902#1 CTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGC 354
************************************************************
consensus_2902#0 GGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAA 1734
consensus_2902#1 GGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAA 414
************************************************************
consensus_2902#0 GCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGC 1794
consensus_2902#1 GCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGC 474
************************************************************
consensus_2902#0 GTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCC 1854
consensus_2902#1 GTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCC 534
************************************************************
consensus_2902#0 CAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTC 1914
consensus_2902#1 CAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTC 594
************************************************************
consensus_2902#0 GTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTC 1974
consensus_2902#1 GTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTC 654
************************************************************
consensus_2902#0 GCCGCCGCGGCCTGCAATTGCAACGGTTGAATTCTCGCACGCGCGCGGGA---------- 2024
consensus_2902#1 GCCGCCGCGGCCTGACACGCTCCCCGTCGATCTC-CGCGCCTTCTTCGCAATCTCCATGT 713
************** * * ** ** ** *** * * * *
consensus_2902#0 ------------------------------------------------------------
consensus_2902#1 CAACCGCCCCGGCAACGGGAGCGATCCCGAGCTAAGCGTCCGCAACGCACGATCGGGAAG 773
consensus_2902#0 ------------------------------------------------------------
consensus_2902#1 AACGCAAATGCCGCCTGCGCCGAGCAGCTGGCCTAGCCTGGCTGTGCACGCGGCTGTCGC 833
consensus_2902#0 ------------------------------------------------------------
consensus_2902#1 CGTCGCCGCCGCCGCCGCCGCTACTCCACGACGACGAGCAAGCAGATGAGATTTTGTGGG 893
consensus_2902#0 -------------------------
consensus_2902#1 GGGAGTCTCTCGCTTCCGGTTTGAG 918
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||