cluster # 2912

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Oryza sativa
cluster # 2912 cluster # 2912 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2912#0 length = 880 sequences # 1

consensus_2912#1 length = 633 sequences # 1

consensusID : consensus_2912#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 880
fasta sequence

                              [ATATCCAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCGAGCAGAGTGATTTAGCGAGAGTGATTAGTTAGCCGCTGACAATGAGACGCCAGGCTGTCGTCGAGCTCGTCGTCGTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGCTCTGGCGCTGCCGCCGCCGATCAGCGGCAGCAAACAGGCAGCAACCAGCCGTCGTCGTCGCCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAGAAGCCGGCGCCGGCCCGGCGCCGCGGCGGCGGCAGCGCGCTCCGGCGAGCGCTGCTCCGCCTCCTGTTCTGCTCCCGCCGCCGCCTCACCCGCGTGGAGCCGGCCGACTCCGCCGCCGCCGCCACGCAGGGGGAGGAAGGGGAGCAGGCGGCGGGGCCCGACGAGGAGGAGGTGAACACGTGGAGGGATCGGTGGTTCGGGCCAGCCACCGCCGCCGCCTCGCGCGCGCTCTACACCATCGACGAGGAGTCCGGCGCCGGCAGCGAGGGCGAGGAGGAGCCGGAGCCCGAGACGCCGTTCTACACGCCGCCGGCCTCCCCGCCCCGGCTCGGCGGCGGCGGCCACTCGCCGGAAGCCACCGTGTGAAGGTGAAGCTAGCAGCTGGTGTTCGTCCACGGTCCACCGCGACATGATTACCCGACCGTTTTCTTGTTTTCTTGTTGGCTAGTAGCAGGCTTGGATTTTTGTTGTCTTCTTTGATTTTTAGTTTTTTGCTCATGTCAAAACGACATTTTTTTAGCCAGGTTGCATGGTGCACAGGTACAGTGCAGTTAGTACTAGTGCTTAGTGTAGTTGTTACTACTTAATGCACGAGCAGGATGGTG]

[+] EMBL AK107795             [ATATCCAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCGAGCAGAGTGATTTAGCGAGAGTGATTAGTTAGCCGCTGACAATGAGACGCCAGGCTGTCGTCGAGCTCGTCGTCGTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGCTCTGGCGCTGCCGCCGCCGATCAGCGGCAGCAAACAGGCAGCAACCAGCCGTCGTCGTCGCCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAGAAGCCGGCGCCGGCCCGGCGCCGCGGCGGCGGCAGCGCGCTCCGGCGAGCGCTGCTCCGCCTCCTGTTCTGCTCCCGCCGCCGCCTCACCCGCGTGGAGCCGGCCGACTCCGCCGCCGCCGCCACGCAGGGGGAGGAAGGGGAGCAGGCGGCGGGGCCCGACGAGGAGGAGGTGAACACGTGGAGGGATCGGTGGTTCGGGCCAGCCACCGCCGCCGCCTCGCGCGCGCTCTACACCATCGACGAGGAGTCCGGCGCCGGCAGCGAGGGCGAGGAGGAGCCGGAGCCCGAGACGCCGTTCTACACGCCGCCGGCCTCCCCGCCCCGGCTCGGCGGCGGCGGCCACTCGCCGGAAGCCACCGTGTGAAGGTGAAGCTAGCAGCTGGTGTTCGTCCACGGTCCACCGCGACATGATTACCCGACCGTTTTCTTGTTTTCTTGTTGGCTAGTAGCAGGCTTGGATTTTTGTTGTCTTCTTTGATTTTTAGTTTTTTGCTCATGTCAAAACGACATTTTTTTAGCCAGGTTGCATGGTGCACAGGTACAGTGCAGTTAGTACTAGTGCTTAGTGTAGTTGTTACTACTTAATGCACGAGCAGGATGGTG]




>consensus_2912#0
ATATCCAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCGAGCAGAGTGATT
TAGCGAGAGTGATTAGTTAGCCGCTGACAATGAGACGCCAGGCTGTCGTCGAGCTCGTCG
TCGTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGC
TCTGGCGCTGCCGCCGCCGATCAGCGGCAGCAAACAGGCAGCAACCAGCCGTCGTCGTCG
CCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAGAAGCCGGCGCCGGCCCGGCGCCGCG
GCGGCGGCAGCGCGCTCCGGCGAGCGCTGCTCCGCCTCCTGTTCTGCTCCCGCCGCCGCC
TCACCCGCGTGGAGCCGGCCGACTCCGCCGCCGCCGCCACGCAGGGGGAGGAAGGGGAGC
AGGCGGCGGGGCCCGACGAGGAGGAGGTGAACACGTGGAGGGATCGGTGGTTCGGGCCAG
CCACCGCCGCCGCCTCGCGCGCGCTCTACACCATCGACGAGGAGTCCGGCGCCGGCAGCG
AGGGCGAGGAGGAGCCGGAGCCCGAGACGCCGTTCTACACGCCGCCGGCCTCCCCGCCCC
GGCTCGGCGGCGGCGGCCACTCGCCGGAAGCCACCGTGTGAAGGTGAAGCTAGCAGCTGG
TGTTCGTCCACGGTCCACCGCGACATGATTACCCGACCGTTTTCTTGTTTTCTTGTTGGC
TAGTAGCAGGCTTGGATTTTTGTTGTCTTCTTTGATTTTTAGTTTTTTGCTCATGTCAAA
ACGACATTTTTTTAGCCAGGTTGCATGGTGCACAGGTACAGTGCAGTTAGTACTAGTGCT
TAGTGTAGTTGTTACTACTTAATGCACGAGCAGGATGGTG

consensusID : consensus_2912#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [TTTTTTTTTGAGTTGGCAAAACACCACATCAATCAAGCTAAACAAACACAACATATCCTCTGATCTTTTTCAGCCGGATTCTGGATACGAGTCGCTGGCAACTGGGCCCCACTCTGATTACGCAAAGTCGAAATCCCAAAAGTACCCCCTCCTCCTTTCTCTCCCACTAACCATCGCCTGGGAAATATTCGACTTAAAGCTAAAGAAGCCAACGTTAAAGACATCAAAAAATCAAAAAAGAAGAGACAGAAATTCTCTTTGCTCACAGGAAGGGAGTCATCTCGTTGGCCATATATCCAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCCAGCAGAGTGATTAGCTGCTGGCAATGAGACGCCAGGCTGTCGTCGAGCTCGTCGTCGTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGCTCTGGCGCTGCGCCGCCGAGCGACAGCGAACACCGTCGTCGCCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAAGAAAGCCGGCGCCGGCCCGGCGCGGCAGCGCGCCTCCGGCAGAGCGCTGCTCCGCTCCTGCTCTGTCCCGCGCGCTCACCGGTGGGAGCCGCGATCGCGCGCG]

[-] EMBL BI806508             [TTTTTTTTTGAGTTGGCAAAACACCACATCAATCAAGCTAAACAAACACAACATATCCTCTGATCTTTTTCAGCCGGATTCTGGATACGAGTCGCTGGCAACTGGGCCCCACTCTGATTACGCAAAGTCGAAATCCCAAAAGTACCCCCTCCTCCTTTCTCTCCCACTAACCATCGCCTGGGAAATATTCGACTTAAAGCTAAAGAAGCCAACGTTAAAGACATCAAAAAATCAAAAAAGAAGAGACAGAAATTCTCTTTGCTCACAGGAAGGGAGTCATCTCGTTGGCCATATATCCAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCCAGCAGAGTGATTAGCTGCTGGCAATGAGACGCCAGGCTGTCGTCGAGCTCGTCGTCGTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGCTCTGGCGCTGCGCCGCCGAGCGACAGCGAACACCGTCGTCGCCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAAGAAAGCCGGCGCCGGCCCGGCGCGGCAGCGCGCCTCCGGCAGAGCGCTGCTCCGCTCCTGCTCTGTCCCGCGCGCTCACCGGTGGGAGCCGCGATCGCGCGCG]




>consensus_2912#1
TTTTTTTTTGAGTTGGCAAAACACCACATCAATCAAGCTAAACAAACACAACATATCCTC
TGATCTTTTTCAGCCGGATTCTGGATACGAGTCGCTGGCAACTGGGCCCCACTCTGATTA
CGCAAAGTCGAAATCCCAAAAGTACCCCCTCCTCCTTTCTCTCCCACTAACCATCGCCTG
GGAAATATTCGACTTAAAGCTAAAGAAGCCAACGTTAAAGACATCAAAAAATCAAAAAAG
AAGAGACAGAAATTCTCTTTGCTCACAGGAAGGGAGTCATCTCGTTGGCCATATATCCAA
AAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCCAGCAGAGTGATTAGCTGCTG
GCAATGAGACGCCAGGCTGTCGTCGAGCTCGTCGTCGTCGCGGCGGCGCTCGCCGCCCTC
GCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGCTCTGGCGCTGCGCCGCCGAGCGACAG
CGAACACCGTCGTCGCCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAAGAAAGCCGGC
GCCGGCCCGGCGCGGCAGCGCGCCTCCGGCAGAGCGCTGCTCCGCTCCTGCTCTGTCCCG
CGCGCTCACCGGTGGGAGCCGCGATCGCGCGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2912#0      ATATCCAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCGAGCAGAGTGATT 60
consensus_2912#1      ------------------------------------------------------------
                                                                                  

consensus_2912#0      TAGCGAGAGTGATTAGTTAGCCGCTGACAATGAGACGCCAGGCTGTCGTCGAGCTCGTCG 120
consensus_2912#1      ------------------------------------------------------------
                                                                                  

consensus_2912#0      TCGTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTGC 180
consensus_2912#1      -------------------------------------------------TTTTTTTTTGA 11
                                                                         *  *  ** 

consensus_2912#0      TCTGGCGCTGCCGCCGCCGATCAGCGGCAGCAAACAGGCAGCAACCAGCCGTCGTCGTCG 240
consensus_2912#1      GTTGGCAAAAC-ACCAC--ATCAATCAAGCTAAACAAACA-CAACATATCCTC-TGATCT 66
                        ****    *  ** *  ****        *****  ** ****    * ** *  ** 

consensus_2912#0      CCTCCGACGCCGAGCTCACGGTCCAGAGCCCGAAGAAGCCGGCGCCGGCCCGGCGCCGCG 300
consensus_2912#1      TTTTCA--GCCGGATTCTGGATACGAGTCGCTGGCAACTGGGCCCCACTCTGATTACGCA 124
                        * *   ****   **  * * *    * *    **   *** **   * *    *** 

consensus_2912#0      GCGGCGGCAGCGCGCTCCGGCGAGCGCTGCTCCGCCTCCTGTTCTGCTCCCGCCGCCGCC 360
consensus_2912#1      AAGTCGAAA------TCCCAAAAGTAC--CCCCTCCTCCT-TTCT-CTCCCACTAAC-CA 173
                        * **  *      ***    **  *  * ** ****** **** ***** *   * * 

consensus_2912#0      TCACCCGCGTGGAGCCGGCCGACTCC--GCCGCCGCCGCCA-CGCAGGGGGAGGAAGGGG 417
consensus_2912#1      TCGCCTG---GGAAATATTCGACTTAAAGCTAAAGAAGCCAACGTTAAAGACATCAAAAA 230
                      ** ** *   ***      *****    **    *  **** **     *     *    

consensus_2912#0      AGCAGGCGGCGGGGCCCGACGAGGAGGAGGTGAACACGTGGAGGGATCGGTGGTTCGGGC 477
consensus_2912#1      ATCAAAAAAGAAGAGACAG-AAATTCTCTTTGCTCACAGGAAGGGAGTCATCTCGTTGGC 289
                      * **        *   *    *        **  ***  * *****    *      ***

consensus_2912#0      CAGCCACCGCCGCCGCCTCGCGCGCGCTCTACACCATCGACGAGGAGTCCGGCGCCGGCA 537
consensus_2912#1      CATATATC--------CAAAAACACATTTCACTTCATCGTCTCGATCGATCGAGCTTCCA 341
                      **   * *        *     * *  *  **  ***** *  *       * **   **

consensus_2912#0      GCGAGGGCGAGGAGGAGCCGGAGCCCGAGACGCCGTTCTACACGCCGCCGGCCTCCCCGC 597
consensus_2912#1      GC-AGAGTGATTAGCTGCTGGCAAT-GAGACGCCAGGCT----GTCGTCGAGCTCGTCGT 395
                      ** ** * **  **  ** **     ********   **    * ** **  ***  ** 

consensus_2912#0      CCCGGCTCGGCGGCGGCGGCCAC--TCGCCGGAAGCCACCGTGTGAAGGTGAAGCTAGCA 655
consensus_2912#1      C--GTCGCGGCGGCGCTCGCCGCCCTCGCCGCCGGCATCCTCGCGGCGTCGCTCCTCCTG 453
                      *  * * ********   *** *  ******   **  **  * *  *  *   **    

consensus_2912#0      G-CTGGTGTT-CGTCCACGGTCCACCGCGACATGATTACCCGACCGTTTTCTTGTTTTCT 713
consensus_2912#1      CTCTGGCGCTGCGCCGCCGAGCGACAGCGA-------ACACCGTCGTCGCCTCCGACGCC 506
                        **** * * ** *  **  * ** ****       ** *   ***   **      * 

consensus_2912#0      TGTTGGCTAGTAGCAGGCTTGGATTTTTGTTGTCTTCTTTGATTTTTAGTTTTTTGCTCA 773
consensus_2912#1      GAGCTCACGGTCCAGAGCCCGAAAGAAAGCCGGCGCCGGCCCGGCGCGGCAGCGCGCCTC 566
                               **     **  * *     *  * *  *           *      **   

consensus_2912#0      TGTCAAAACGACATTTTTTTAGCCAGGTTGCATGGTGCACAGGTACAGTGCAGTTAGTAC 833
consensus_2912#1      CGGCAGAGCGCTGCTCCGCTC-CTGCTCTGTCCCGCGCGCTCAC-CGGTGGGAGCCGCGA 624
                       * ** * **    *    *  *     **    * ** *     * ***      *   

consensus_2912#0      TAGTGCTTAGTGTAGTTGTTACTACTTAATGCACGAGCAGGATGGTG 880
consensus_2912#1      TCGCGCGCG-------------------------------------- 633
                      * * **