cluster # 2928

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Oryza sativa
cluster # 2928 cluster # 2928 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2928#0 length = 606 sequences # 1

consensus_2928#1 length = 365 sequences # 1

consensusID : consensus_2928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [ACGAATCATCCAGCTGTCCAACATAAAATCATTTCAGTCATTGGAAATCTGCCATTCTTTTTCTTTTTCTGAGAAAGGCATTTGACGTTCTTAAGAATATTACTCTTTCTTATCCACTTTGCATGTTCATGCTTCTCTAAATCCATGGTTGGTTTGTGTATGTGTTTCTAGACTCCCTTTAACCTTTGAGTGTGGAACTCTTTCATAGAAAAGAATGTAGGCCTCACATTTTAATACATTTTCGAACAGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCACTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCGCCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTGTCCAGATATCTGAACATCAGAGAAATGAATAATGGTTAAAAATATTTTTTTTTGAAGAAGTTATCACCAAAGTTATTGGCACTATGATCTTATCGTGTATCATATTGGATCAGTATTGAAAAAATATGAGCTATGTTATATTCAACTAAGTAGAAGTATTAATACCCTGGTGTCCATATATTTGGTTA]

[+] EMBL CF307191             [ACGAATCATCCAGCTGTCCAACATAAAATCATTTCAGTCATTGGAAATCTGCCATTCTTTTTCTTTTTCTGAGAAAGGCATTTGACGTTCTTAAGAATATTACTCTTTCTTATCCACTTTGCATGTTCATGCTTCTCTAAATCCATGGTTGGTTTGTGTATGTGTTTCTAGACTCCCTTTAACCTTTGAGTGTGGAACTCTTTCATAGAAAAGAATGTAGGCCTCACATTTTAATACATTTTCGAACAGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCACTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCGCCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTGTCCAGATATCTGAACATCAGAGAAATGAATAATGGTTAAAAATATTTTTTTTTGAAGAAGTTATCACCAAAGTTATTGGCACTATGATCTTATCGTGTATCATATTGGATCAGTATTGAAAAAATATGAGCTATGTTATATTCAACTAAGTAGAAGTATTAATACCCTGGTGTCCATATATTTGGTTA]




>consensus_2928#0
ACGAATCATCCAGCTGTCCAACATAAAATCATTTCAGTCATTGGAAATCTGCCATTCTTT
TTCTTTTTCTGAGAAAGGCATTTGACGTTCTTAAGAATATTACTCTTTCTTATCCACTTT
GCATGTTCATGCTTCTCTAAATCCATGGTTGGTTTGTGTATGTGTTTCTAGACTCCCTTT
AACCTTTGAGTGTGGAACTCTTTCATAGAAAAGAATGTAGGCCTCACATTTTAATACATT
TTCGAACAGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCACT
GCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCGCC
ATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTGTC
CAGATATCTGAACATCAGAGAAATGAATAATGGTTAAAAATATTTTTTTTTGAAGAAGTT
ATCACCAAAGTTATTGGCACTATGATCTTATCGTGTATCATATTGGATCAGTATTGAAAA
AATATGAGCTATGTTATATTCAACTAAGTAGAAGTATTAATACCCTGGTGTCCATATATT
TGGTTA

consensusID : consensus_2928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [AGTTGTTCACCGGTTGCTGGCCGTGGCCTTCCCGCCGGAGGAGGAGGAGGNGATGGGCCATCCGGCGGCGGGGCGGGAGGAGCGTCGGCGGAGACCCATGGCGTCGCGGGCTGCCCGCCGCGGAGATCACTGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCACTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCGCCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTGTCCAGATATCTGAACATCAGAGAAATGAATAATNGGTTAAAAATATTTTTTTTTTGGAAAAAAA]

[+] EMBL AU161975             [AGTTGTTCACCGGTTGCTGGCCGTGGCCTTCCCGCCGGAGGAGGAGGAGGNGATGGGCCATCCGGCGGCGGGGCGGGAGGAGCGTCGGCGGAGACCCATGGCGTCGCGGGCTGCCCGCCGCGGAGATCACTGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCACTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCGCCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTGTCCAGATATCTGAACATCAGAGAAATGAATAATNGGTTAAAAATATTTTTTTTTTGGAAAAAAA]




>consensus_2928#1
AGTTGTTCACCGGTTGCTGGCCGTGGCCTTCCCGCCGGAGGAGGAGGAGGNGATGGGCCA
TCCGGCGGCGGGGCGGGAGGAGCGTCGGCGGAGACCCATGGCGTCGCGGGCTGCCCGCCG
CGGAGATCACTGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTC
ACTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCC
GCCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATT
GTCCAGATATCTGAACATCAGAGAAATGAATAATNGGTTAAAAATATTTTTTTTTTGGAA
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2928#0      ACGAATCATCCAGCTGTCCAACATAAAATCATTTCAGTCATTGGAAATCTGCCATTCTTT 60
consensus_2928#1      ------------------------------------------------------------
                                                                                  

consensus_2928#0      TTCTTTTTCTGAGAAAGGCATTTGACGTTCTTAAGAATATTACTCTTTCTTATCCACT-- 118
consensus_2928#1      -----------------------------------------------AGTTGTTCACCGG 13
                                                                       ** * ***   

consensus_2928#0      TTGCATGTTCATGCTTCTCTAAATCCATGGTTGGTTTGTGTATGTGTTTCTAGACTCCCT 178
consensus_2928#1      TTGC-TGGCCGTGGCCTTCCCG-CCGGAGGAGGAGGAGGNGATGGG----------CCAT 61
                      **** **  * **    **     *   **  *    *   *** *          ** *

consensus_2928#0      TTAACCTTTGAGTGTGGAACTCTTTCATAGAAAAGAATGTAGGCCTCACATTTTAATACA 238
consensus_2928#1      CCGGCGGCGGGGCGGGAGGAGCGTCGGCGGAGACCCATGGCGTCGCGGGCTGCCCGCCGC 121
                          *    * * * *     * *     ** *   ***  * *      *         

consensus_2928#0      TTTTCGAACAGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCA 298
consensus_2928#1      GGAGATCACTGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCA 181
                             ** **************************************************

consensus_2928#0      CTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCG 358
consensus_2928#1      CTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAAATAGTGCCCG 241
                      ************************************************************

consensus_2928#0      CCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTG 418
consensus_2928#1      CCATCCAACTTTTGACCTCCGTGCACAATTACCGCTACAAGGCAATATTTGTACTCATTG 301
                      ************************************************************

consensus_2928#0      TCCAGATATCTGAACATCAGAGAAATGAATAATGG-TTAAAAATATTTTTTTTTGAAGAA 477
consensus_2928#1      TCCAGATATCTGAACATCAGAGAAATGAATAATNGGTTAAAAATATTTTTTTTTTGGAAA 361
                      ********************************* * ******************    **

consensus_2928#0      GTTATCACCAAAGTTATTGGCACTATGATCTTATCGTGTATCATATTGGATCAGTATTGA 537
consensus_2928#1      AAAA-------------------------------------------------------- 365
                         *                                                        

consensus_2928#0      AAAAATATGAGCTATGTTATATTCAACTAAGTAGAAGTATTAATACCCTGGTGTCCATAT 597
consensus_2928#1      ------------------------------------------------------------
                                                                                  

consensus_2928#0      ATTTGGTTA 606
consensus_2928#1      ---------