cluster # 2936

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Oryza sativa
cluster # 2936 cluster # 2936 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2936#0 length = 341 sequences # 1

consensus_2936#1 length = 300 sequences # 1

consensusID : consensus_2936#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [GGNNNNNAAGATCCAGGGAGTGAGTGCCTGCTTTATCTTGTCTACAATGCATCTTTTTTTTGTTTGTTTATTTGTTTTGGTAGGATGATTTCTTGAGTGGATTGGTGCAGTGGCTTGGTNNNAATTTGGGATAGGCCGATGAGTATTTCTGTNNNNTGTAGATGAATTAGTAGCATTTGTTGTTNNNTCTTANNGTATCANNGTGTTGGAGTGCTGATTTATGATGCTTAACTATTTATTTAGCCNNNNNNCTGATAATGATCNNNNGTTCTTGTGTATNNNNNATTTNNNNTTTTTGGCACNNNNNNNTGANNNNNNCTGGTNNATTTGANNNNNNNNNG]

[+] EMBL CF195820             [GGNNNNNAAGATCCAGGGAGTGAGTGCCTGCTTTATCTTGTCTACAATGCATCTTTTTTTTGTTTGTTTATTTGTTTTGGTAGGATGATTTCTTGAGTGGATTGGTGCAGTGGCTTGGTNNNAATTTGGGATAGGCCGATGAGTATTTCTGTNNNNTGTAGATGAATTAGTAGCATTTGTTGTTNNNTCTTANNGTATCANNGTGTTGGAGTGCTGATTTATGATGCTTAACTATTTATTTAGCCNNNNNNCTGATAATGATCNNNNGTTCTTGTGTATNNNNNATTTNNNNTTTTTGGCACNNNNNNNTGANNNNNNCTGGTNNATTTGANNNNNNNNNG]




>consensus_2936#0
GGNNNNNAAGATCCAGGGAGTGAGTGCCTGCTTTATCTTGTCTACAATGCATCTTTTTTT
TGTTTGTTTATTTGTTTTGGTAGGATGATTTCTTGAGTGGATTGGTGCAGTGGCTTGGTN
NNAATTTGGGATAGGCCGATGAGTATTTCTGTNNNNTGTAGATGAATTAGTAGCATTTGT
TGTTNNNTCTTANNGTATCANNGTGTTGGAGTGCTGATTTATGATGCTTAACTATTTATT
TAGCCNNNNNNCTGATAATGATCNNNNGTTCTTGTGTATNNNNNATTTNNNNTTTTTGGC
ACNNNNNNNTGANNNNNNCTGGTNNATTTGANNNNNNNNNG

consensusID : consensus_2936#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [GGAAGAAGATCCAGGGAGTGAGTGCCTGCTTTATCTTGTCTACAATGCATCTTTTTTTTGTTTGTTTATTTGTTTTGGTAGGATGATTTCTTGAGTGGATTGGTGCAGTGGCTTGGTAGAAATTTGGGATAGGCCGATGAGTATTTCTGTTAAATGTAGATGAATTAGTAGCATTTGTTGTTCGATCTTAGCGTATCACCGTGTTGGAGTGCTGATTTATGATGCTTAACTATTTATTTAGCCTNNNACCTGATAATGATCGGACNNTCTTGTGTATTGTGCATTTANNNNNNNTGGCAC]

[+] EMBL CF195679             [GGAAGAAGATCCAGGGAGTGAGTGCCTGCTTTATCTTGTCTACAATGCATCTTTTTTTTGTTTGTTTATTTGTTTTGGTAGGATGATTTCTTGAGTGGATTGGTGCAGTGGCTTGGTAGAAATTTGGGATAGGCCGATGAGTATTTCTGTTAAATGTAGATGAATTAGTAGCATTTGTTGTTCGATCTTAGCGTATCACCGTGTTGGAGTGCTGATTTATGATGCTTAACTATTTATTTAGCCTNNNACCTGATAATGATCGGACNNTCTTGTGTATTGTGCATTTANNNNNNNTGGCAC]




>consensus_2936#1
GGAAGAAGATCCAGGGAGTGAGTGCCTGCTTTATCTTGTCTACAATGCATCTTTTTTTTG
TTTGTTTATTTGTTTTGGTAGGATGATTTCTTGAGTGGATTGGTGCAGTGGCTTGGTAGA
AATTTGGGATAGGCCGATGAGTATTTCTGTTAAATGTAGATGAATTAGTAGCATTTGTTG
TTCGATCTTAGCGTATCACCGTGTTGGAGTGCTGATTTATGATGCTTAACTATTTATTTA
GCCTNNNACCTGATAATGATCGGACNNTCTTGTGTATTGTGCATTTANNNNNNNTGGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2936#0      GGNNNNNAAGATCCAGGGAGTGAGTGCCTGCTTTATCTTGTCTACAATGCATCTTTTTTT 60
consensus_2936#1      --GGAAGAAGATCCAGGGAGTGAGTGCCTGCTTTATCTTGTCTACAATGCATCTTTTTTT 58
                             *****************************************************

consensus_2936#0      TGTTTGTTTATTTGTTTTGGTAGGATGATTTCTTGAGTGGATTGGTGCAGTGGCTTGGTN 120
consensus_2936#1      TGTTTGTTTATTTGTTTTGGTAGGATGATTTCTTGAGTGGATTGGTGCAGTGGCTTGGTA 118
                      *********************************************************** 

consensus_2936#0      NNAATTTGGGATAGGCCGATGAGTATTTCTGTNNNNTGTAGATGAATTAGTAGCATTTGT 180
consensus_2936#1      GAAATTTGGGATAGGCCGATGAGTATTTCTGTTAAATGTAGATGAATTAGTAGCATTTGT 178
                        ******************************    ************************

consensus_2936#0      TGTTNNNTCTTANNGTATCANNGTGTTGGAGTGCTGATTTATGATGCTTAACTATTTATT 240
consensus_2936#1      TGTTCGATCTTAGCGTATCACCGTGTTGGAGTGCTGATTTATGATGCTTAACTATTTATT 238
                      ****   *****  ******  **************************************

consensus_2936#0      TAGCCNNNNNNCTGATAATGATCNNNNGTTCTTGTGTATNNNNNATTTNNNNTTTTTGGC 300
consensus_2936#1      TAGCCTNNNACCTGATAATGATCGGACNNTCTTGTGTATTGTGCATTTANNNNNNNTGGC 298
                      ***** ***  ************      **********     **** ***    ****

consensus_2936#0      ACNNNNNNNTGANNNNNNCTGGTNNATTTGANNNNNNNNNG 341
consensus_2936#1      AC--------------------------------------- 300
                      **