cluster # 2938

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Oryza sativa
cluster # 2938 cluster # 2938 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2938#0 length = 392 sequences # 1

consensus_2938#1 length = 261 sequences # 1

consensusID : consensus_2938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [TGCNNNNNNNNNCCNNNGAGACGAGCGATACCGTACTCCAGACTCATCGTCTGGCTTTCGCTCANNTCGATAGTTTNNCGCAATGCCAGCATGTCGTATTCGGTATTATTACCTNACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCGTTACCCACTTTCGGCGCGGCATCTGCCAGCATACTAAAGCGNTTGCTTAACACACGCGCTTCGCGGAATACCGNNGTCGCCTGGCTACCGCTGACCTGTTTCAGAGCACTGTTNNNTTCANNNGTCGNNNNNNCGTTCAGGCTGGTAAACAGTTCNNNNNNGGTGTAACCCGCATCCAGTGCTTTCGNNNTGTCATTCACCGNNNNATCTNNNGCCACATCGNNNTNNNC]

[+] EMBL CF195771             [TGCNNNNNNNNNCCNNNGAGACGAGCGATACCGTACTCCAGACTCATCGTCTGGCTTTCGCTCANNTCGATAGTTTNNCGCAATGCCAGCATGTCGTATTCGGTATTATTACCTNACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCGTTACCCACTTTCGGCGCGGCATCTGCCAGCATACTAAAGCGNTTGCTTAACACACGCGCTTCGCGGAATACCGNNGTCGCCTGGCTACCGCTGACCTGTTTCAGAGCACTGTTNNNTTCANNNGTCGNNNNNNCGTTCAGGCTGGTAAACAGTTCNNNNNNGGTGTAACCCGCATCCAGTGCTTTCGNNNTGTCATTCACCGNNNNATCTNNNGCCACATCGNNNTNNNC]




>consensus_2938#0
TGCNNNNNNNNNCCNNNGAGACGAGCGATACCGTACTCCAGACTCATCGTCTGGCTTTCG
CTCANNTCGATAGTTTNNCGCAATGCCAGCATGTCGTATTCGGTATTATTACCTNACTCG
GCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCGTTACCCACTTTCGGCGCG
GCATCTGCCAGCATACTAAAGCGNTTGCTTAACACACGCGCTTCGCGGAATACCGNNGTC
GCCTGGCTACCGCTGACCTGTTTCAGAGCACTGTTNNNTTCANNNGTCGNNNNNNCGTTC
AGGCTGGTAAACAGTTCNNNNNNGGTGTAACCCGCATCCAGTGCTTTCGNNNTGTCATTC
ACCGNNNNATCTNNNGCCACATCGNNNTNNNC

consensusID : consensus_2938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [TCCCCCGGGTTNNNGCNNNNNNNNNNNATCGAGANNNNNNGATACCGTACTNNNGANNNNNNNNCTGGCTTTCGCTCNNNTNNNNNNNTTTACGCANNGCCAGCATNNNNNNTTCGGNNNTATTACCTAACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCNNTACCCACTTTCGGCGCGGCATCTGCCNGCANACTAAAGCGGCTGCTTNNNNNNNGCGCTTCGCGGAATACCNNNNNCGCCTGGC]

[+] EMBL CF195699             [TCCCCCGGGTTNNNGCNNNNNNNNNNNATCGAGANNNNNNGATACCGTACTNNNGANNNNNNNNCTGGCTTTCGCTCNNNTNNNNNNNTTTACGCANNGCCAGCATNNNNNNTTCGGNNNTATTACCTAACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCNNTACCCACTTTCGGCGCGGCATCTGCCNGCANACTAAAGCGGCTGCTTNNNNNNNGCGCTTCGCGGAATACCNNNNNCGCCTGGC]




>consensus_2938#1
TCCCCCGGGTTNNNGCNNNNNNNNNNNATCGAGANNNNNNGATACCGTACTNNNGANNNN
NNNNCTGGCTTTCGCTCNNNTNNNNNNNTTTACGCANNGCCAGCATNNNNNNTTCGGNNN
TATTACCTAACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCNNTAC
CCACTTTCGGCGCGGCATCTGCCNGCANACTAAAGCGGCTGCTTNNNNNNNGCGCTTCGC
GGAATACCNNNNNCGCCTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2938#0      -------------TGCNNNNNNNNNCCNNNGAGACGAGCG-ATACCGTACTCCAGACTCA 46
consensus_2938#1      TCCCCCGGGTTNNNGCNNNNNNNNNNNATCGAGANNNNNNGATACCGTACTNNNGANNNN 60
                                    ***********     ****       **********   **    

consensus_2938#0      TCGTCTGGCTTTCGCTCANNTCGATAGTTTNNCGCAATGCCAGCATGTCGTATTCGGTAT 106
consensus_2938#1      NNNNCTGGCTTTCGCTCNNNTNNNNNNNTTTACGCANNGCCAGCATNNNNNNTTCGGNNN 120
                          ************* ***       **  ****  ********      *****   

consensus_2938#0      TATTACCTNACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCGTTAC 166
consensus_2938#1      TATTACCTAACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCNNTAC 180
                      ******** **********************************************  ***

consensus_2938#0      CCACTTTCGGCGCGGCATCTGCCAGCATACTAAAGCGNTTGCTTAACACACGCGCTTCGC 226
consensus_2938#1      CCACTTTCGGCGCGGCATCTGCCNGCANACTAAAGCGGCTGCTTNNNNNNNGCGCTTCGC 240
                      *********************** *** *********  *****       *********

consensus_2938#0      GGAATACCGNNGTCGCCTGGCTACCGCTGACCTGTTTCAGAGCACTGTTNNNTTCANNNG 286
consensus_2938#1      GGAATACCNNNNNCGCCTGGC--------------------------------------- 261
                      ******** **  ********                                       

consensus_2938#0      TCGNNNNNNCGTTCAGGCTGGTAAACAGTTCNNNNNNGGTGTAACCCGCATCCAGTGCTT 346
consensus_2938#1      ------------------------------------------------------------
                                                                                  

consensus_2938#0      TCGNNNTGTCATTCACCGNNNNATCTNNNGCCACATCGNNNTNNNC 392
consensus_2938#1      ----------------------------------------------