cluster # 2943

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2943 cluster # 2943 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2943#0 length = 423 sequences # 1

consensus_2943#1 length = 290 sequences # 1

consensusID : consensus_2943#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [CCACCTTCCCCACCCTTGTGTAGGCCCACACCCTTGTATGAGTGTGGTTTGTTGTGCCACAGTGCCACTGCCGACTACAATACCCCCAGGTGTTAATTGAAACTCCATAGGCACCCCACTTCTGAAGGAGGCCTACCGAGAAAGGGTCCACAAGTAGGCACACTCCGGTGCCACGTATCTCTTGGACTGGAGATTTTCTCGATCTGAGGGAATGCCTGAAGAAACCCACGTGGCTTGTGGTTTCCCCACCTGGAGGCTGAAGCCCNCCCGCTCNCNGTGCCCATAGTGATGGTTAGTGGCTGATGTTAACCTTGAATAGTGCACTGGCTGGTAATGGTTGCCACAGTAGTAGGCTGTTTACCTTTCTAGGCCNGTAATTATATATGTTTATGAAGTACTGTTTGTNCTCCTTGAAAAAAAAAA]

[+] EMBL BI805462             [CCACCTTCCCCACCCTTGTGTAGGCCCACACCCTTGTATGAGTGTGGTTTGTTGTGCCACAGTGCCACTGCCGACTACAATACCCCCAGGTGTTAATTGAAACTCCATAGGCACCCCACTTCTGAAGGAGGCCTACCGAGAAAGGGTCCACAAGTAGGCACACTCCGGTGCCACGTATCTCTTGGACTGGAGATTTTCTCGATCTGAGGGAATGCCTGAAGAAACCCACGTGGCTTGTGGTTTCCCCACCTGGAGGCTGAAGCCCNCCCGCTCNCNGTGCCCATAGTGATGGTTAGTGGCTGATGTTAACCTTGAATAGTGCACTGGCTGGTAATGGTTGCCACAGTAGTAGGCTGTTTACCTTTCTAGGCCNGTAATTATATATGTTTATGAAGTACTGTTTGTNCTCCTTGAAAAAAAAAA]




>consensus_2943#0
CCACCTTCCCCACCCTTGTGTAGGCCCACACCCTTGTATGAGTGTGGTTTGTTGTGCCAC
AGTGCCACTGCCGACTACAATACCCCCAGGTGTTAATTGAAACTCCATAGGCACCCCACT
TCTGAAGGAGGCCTACCGAGAAAGGGTCCACAAGTAGGCACACTCCGGTGCCACGTATCT
CTTGGACTGGAGATTTTCTCGATCTGAGGGAATGCCTGAAGAAACCCACGTGGCTTGTGG
TTTCCCCACCTGGAGGCTGAAGCCCNCCCGCTCNCNGTGCCCATAGTGATGGTTAGTGGC
TGATGTTAACCTTGAATAGTGCACTGGCTGGTAATGGTTGCCACAGTAGTAGGCTGTTTA
CCTTTCTAGGCCNGTAATTATATATGTTTATGAAGTACTGTTTGTNCTCCTTGAAAAAAA
AAA

consensusID : consensus_2943#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [TCCAATAGTATGTTAGTGCTGATGTTAACTTAATAGTCACTGCTGTAATGTTCCAAGTAGTAGGCTGTTTACCTTCTAGGCCAGTAATTATATATGTTTATGAAGTACTGTTTGTCTAGTTGAAGGTGTTGCGCCAAGTGAGATCCACATAGGCAAATTAGGATTAATGCTGTGGATGGCGTTGGCTCAAAGTTGGTCTAATTAGCTCCAAAATCTGATATATGTTATGACAGTTTATGGGTGTGTTTAGTTCCTGAAAAAAGTTGGAAGTTTGAAGAAAAAAAAAAAAA]

[+] EMBL AU069261             [TCCAATAGTATGTTAGTGCTGATGTTAACTTAATAGTCACTGCTGTAATGTTCCAAGTAGTAGGCTGTTTACCTTCTAGGCCAGTAATTATATATGTTTATGAAGTACTGTTTGTCTAGTTGAAGGTGTTGCGCCAAGTGAGATCCACATAGGCAAATTAGGATTAATGCTGTGGATGGCGTTGGCTCAAAGTTGGTCTAATTAGCTCCAAAATCTGATATATGTTATGACAGTTTATGGGTGTGTTTAGTTCCTGAAAAAAGTTGGAAGTTTGAAGAAAAAAAAAAAAA]




>consensus_2943#1
TCCAATAGTATGTTAGTGCTGATGTTAACTTAATAGTCACTGCTGTAATGTTCCAAGTAG
TAGGCTGTTTACCTTCTAGGCCAGTAATTATATATGTTTATGAAGTACTGTTTGTCTAGT
TGAAGGTGTTGCGCCAAGTGAGATCCACATAGGCAAATTAGGATTAATGCTGTGGATGGC
GTTGGCTCAAAGTTGGTCTAATTAGCTCCAAAATCTGATATATGTTATGACAGTTTATGG
GTGTGTTTAGTTCCTGAAAAAAGTTGGAAGTTTGAAGAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2943#0      CCACCTTCCCCACCCTTGTGTAGGCCCACACCCTTGTATGAGTGTGGTTTGTTGTGCCAC 60
consensus_2943#1      ----------------------------------------------TCCAATAGTATGTT 14
                                                                         * **     

consensus_2943#0      AGTGCCACTGCCGACTACAATACCCCCAGGTGTTAATTGAAACTCCATAGGCACCCCACT 120
consensus_2943#1      AGTGCTGATGTTAACT-TAATAGTCACTGCTGTAATGTTCCAAGTAGTAGGCTGTTTACC 73
                      *****   **   ***  ****  * * * *** *  *   *     *****     ** 

consensus_2943#0      TCTGAAGGAGGCCTACCGAGAAAGGGTCCACAAGTAGGCACACTCCGGTGCCACGTATCT 180
consensus_2943#1      TTCTAGGCCAG--TAATTATATATGTTTATGAAGTACTGTTTGTCTAGTTGAAGGTGTTG 131
                      *   * *   *  **   * * * * *    *****       **  **   * ** *  

consensus_2943#0      CTTGGACTGGAGATTTTCTCGATCTGAGGGAATGCCTGAAGAAACCCACGTGGCTTGTGG 240
consensus_2943#1      CGCCAAGTGAGA------TCCACATAGGCAAAT--TAGGATTAATGC-TGTGGATGGCGT 182
                      *    * **         ** *  *  *  ***    * *  **  *  **** * * * 

consensus_2943#0      TTTCCCCACCTGGAGGCTGAAGCCCNCCCGCTCNCNGTGCCCATAGTGATGGTTAGTGGC 300
consensus_2943#1      TGGCTCAAAGTTG-GTCTAATTAGCTCCAAAATCTGATATATGTTATGACAGTTTATGGG 241
                      *  * * *  * * * ** *    * **         *     *  ***  ***  *** 

consensus_2943#0      TGATGTTAACCTTGAATAGTGCACTGGCTGGTAATGGTTGCCACAGTAGTAGGCTGTTTA 360
consensus_2943#1      TG-TGTTTAGTTCCTGAAAAAAGTTGGAAGTTTGAAGAAAAAAAAAAAAA---------- 290
                      ** **** *  *     *      ***  * *    *     * *  *            

consensus_2943#0      CCTTTCTAGGCCNGTAATTATATATGTTTATGAAGTACTGTTTGTNCTCCTTGAAAAAAA 420
consensus_2943#1      ------------------------------------------------------------
                                                                                  

consensus_2943#0      AAA 423
consensus_2943#1      ---