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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1375 fasta sequence
[CAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTAGAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTCACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAAAAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAGGAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCGGAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGCCGCAAGAGAGCATGGAGGAGCTGAAGCAGAGCTTGATGGCGACAACGCTGGAGCTGGACGCGGCGAAGGAGGAGCTCAAGAAGAAGGAGCAGAGCATCGCCAAGCTCGCCGACCTCGTCCGCCATGTCGCCAAGGAGCGCGACGACGCGCGCGACCAGCTGCAGCGTCTCCTCGCCGCCGCGGCCGCCAAGCCGCCGCCGCTCGTCACCTCCAGCGTCACCGACTCCGACGGCGGCAGCCTCGTCTCCTCCCCCGCCGCCGACAACCCCTTCTTCGACCCCGTCACCTCCTCCGACAAGCGCTGCTGCGCCATCGCCAGCCCGCCCCCCGCCGCCAAGCAGCAGCACGCCGCCGCCGCGGGCGCCGACGCGGTGCTCGACATGCTCGCCATGAAGAAGCCGCTGCCGCAGAGGGGCAGGCTGCTCCAGTCCGTCATGGAGGCCGGGCCGCTCCTGCAGAACCTGCTCGTCGCCGGCCTTCTCCCGCGGTGGCGCAACCCGCCGCCGGTCGCGCTCGACACGCTCCCCGTCGGCGTCCGGGCCGGTGGCGCTGTCTACCCCGGCGCGTCACTCTCGCCCGGGATCACCTCCTCCGCGGCGGTGATCGGCTACGGCGGCGGCGCCAATGCCTGCGGGAAGAGGCCCATGGCGGCGGCGGCGGCGGCGGTGGCGGCCAGCTGCTCGCCGGCGGCGTTCAGCGCCAAGCGGCATCGGCTGCACTGACCGTCCGATCCGATGCTGTCGTGTGCACGGGATCGGACGGCTGTCGTGCGTCCAGCTTACGACCGGTTGGTTCGTTAGGTGGTGGTCGTGTGGCCCACCTGTCAGTGACAAGGGATTGCCATTGAGGGCCCACTTGTCAGTGACATGTGATTACCATTGAGGGCGAGCGAATATTTGCATGAACCAAAAACATTAGTAGATGCTAACTGCTTAGTGTTAAGAGTCGTCATGATAGAATTATTATAGAGTTGATCCTGCTTAATTATGATGTAAATAGGAAGTTAGTATCAAATTTTAATTAAACCTGTTCCTTGCT]
[+] EMBL AK106226 [CAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTAGAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTCACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAAAAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAGGAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCGGAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGCCGCAAGAGAGCATGGAGGAGCTGAAGCAGAGCTTGATGGCGACAACGCTGGAGCTGGACGCGGCGAAGGAGGAGCTCAAGAAGAAGGAGCAGAGCATCGCCAAGCTCGCCGACCTCGTCCGCCATGTCGCCAAGGAGCGCGACGACGCGCGCGACCAGCTGCAGCGTCTCCTCGCCGCCGCGGCCGCCAAGCCGCCGCCGCTCGTCACCTCCAGCGTCACCGACTCCGACGGCGGCAGCCTCGTCTCCTCCCCCGCCGCCGACAACCCCTTCTTCGACCCCGTCACCTCCTCCGACAAGCGCTGCTGCGCCATCGCCAGCCCGCCCCCCGCCGCCAAGCAGCAGCACGCCGCCGCCGCGGGCGCCGACGCGGTGCTCGACATGCTCGCCATGAAGAAGCCGCTGCCGCAGAGGGGCAGGCTGCTCCAGTCCGTCATGGAGGCCGGGCCGCTCCTGCAGAACCTGCTCGTCGCCGGCCTTCTCCCGCGGTGGCGCAACCCGCCGCCGGTCGCGCTCGACACGCTCCCCGTCGGCGTCCGGGCCGGTGGCGCTGTCTACCCCGGCGCGTCACTCTCGCCCGGGATCACCTCCTCCGCGGCGGTGATCGGCTACGGCGGCGGCGCCAATGCCTGCGGGAAGAGGCCCATGGCGGCGGCGGCGGCGGCGGTGGCGGCCAGCTGCTCGCCGGCGGCGTTCAGCGCCAAGCGGCATCGGCTGCACTGACCGTCCGATCCGATGCTGTCGTGTGCACGGGATCGGACGGCTGTCGTGCGTCCAGCTTACGACCGGTTGGTTCGTTAGGTGGTGGTCGTGTGGCCCACCTGTCAGTGACAAGGGATTGCCATTGAGGGCCCACTTGTCAGTGACATGTGATTACCATTGAGGGCGAGCGAATATTTGCATGAACCAAAAACATTAGTAGATGCTAACTGCTTAGTGTTAAGAGTCGTCATGATAGAATTATTATAGAGTTGATCCTGCTTAATTATGATGTAAATAGGAAGTTAGTATCAAATTTTAATTAAACCTGTTCCTTGCT]
consensusID : consensus_2946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 978 fasta sequence
[AACCTCCTCCTGTGATTAGTAAACAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTAGAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTCACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAAAAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAGGAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCGGAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGCCGCAAGAGGTAATTAATTGATTTGGCAAACATCGTCTTTGATCTCCAGCCGTCTTGTTTCTCTCCGGTGAACCCAAACGGAAGAAAGATTTCTGAGCACCGCATTTCTTGGCCGGCCATGGCCGCCGCCGCCCGGCCGGCCGGCGGCGAAATGCGTGTATGAGTTTGCTGTTCTTGGAGTCGTAGCGGATGGGGGCGAATCATCGATGTGTTGTCTTGTCCCTCTCATCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCGTGTTTGTCGTGGTCAAGACGGGTTAGGCAAGCTTGGGGACTCGCGACGCCATGGCTGACGTGCTGGAATTCTTCTCCTTTTCCATCACTAGTTTTGCTTCTTCTTCTTTCTTCTTTCTTCTTTCTTGTGGAAAATTCACTCCAAGAAGAAGACTCACTTCTTGTAACTTGTCTTTGGTTCGGTTCACAGAAGTACTAGTAGAATACAATTTCAGGTTTGGTTTGGTTCACTTTTTTTCTTTTTCAACAAAAGTTTGGCACTGTAGTGAGATGCTGTACAATGATGTTGTTTTTTTTTCTTTTCCTCCGGTCCCTATGAGGAGAGAGAAACAGAGAGAGAGAGAGAGAGAGTGAT]
[+] EMBL AK110672 [AACCTCCTCCTGTGATTAGTAAACAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTAGAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTCACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAAAAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAGGAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCGGAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGCCGCAAGAGGTAATTAATTGATTTGGCAAACATCGTCTTTGATCTCCAGCCGTCTTGTTTCTCTCCGGTGAACCCAAACGGAAGAAAGATTTCTGAGCACCGCATTTCTTGGCCGGCCATGGCCGCCGCCGCCCGGCCGGCCGGCGGCGAAATGCGTGTATGAGTTTGCTGTTCTTGGAGTCGTAGCGGATGGGGGCGAATCATCGATGTGTTGTCTTGTCCCTCTCATCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCGTGTTTGTCGTGGTCAAGACGGGTTAGGCAAGCTTGGGGACTCGCGACGCCATGGCTGACGTGCTGGAATTCTTCTCCTTTTCCATCACTAGTTTTGCTTCTTCTTCTTTCTTCTTTCTTCTTTCTTGTGGAAAATTCACTCCAAGAAGAAGACTCACTTCTTGTAACTTGTCTTTGGTTCGGTTCACAGAAGTACTAGTAGAATACAATTTCAGGTTTGGTTTGGTTCACTTTTTTTCTTTTTCAACAAAAGTTTGGCACTGTAGTGAGATGCTGTACAATGATGTTGTTTTTTTTTCTTTTCCTCCGGTCCCTATGAGGAGAGAGAAACAGAGAGAGAGAGAGAGAGAGTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2946#0 -----------------------CAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTA 37
consensus_2946#1 AACCTCCTCCTGTGATTAGTAAACAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTA 60
*************************************
consensus_2946#0 GAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTC 97
consensus_2946#1 GAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTC 120
************************************************************
consensus_2946#0 ACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAA 157
consensus_2946#1 ACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAA 180
************************************************************
consensus_2946#0 AAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAG 217
consensus_2946#1 AAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAG 240
************************************************************
consensus_2946#0 GAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCG 277
consensus_2946#1 GAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCG 300
************************************************************
consensus_2946#0 GAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGC 337
consensus_2946#1 GAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGC 360
************************************************************
consensus_2946#0 CGCAAGAGAGCATGGAGGAGCTGAAGCAGAGCTTGATGGCGACAACGCTGGAGCTGGACG 397
consensus_2946#1 CGCAAGAGGTAATTAATTGATTTG-GCAAACATCGTCTTTGATCTCCAGCCGTCTTGTTT 419
******** ** * * *** * * * ** * ** *
consensus_2946#0 CGGCGAAGGAGGAGCTCAAGAAGAAGGAGCAGAGCATCGCCAAGCTCGCCGACCTCGTCC 457
consensus_2946#1 CTCTCCGGT--GAACCCAAACGGAAGAAAGA-----TTTCTGAGC------ACCGCATTT 466
* * ** * *** **** * * * * *** *** * *
consensus_2946#0 GCCATGTCGCCAAGGAGCGCGACGACGCGCGCGACCAGCTGCAGCGTCTCCTCGCCGCCG 517
consensus_2946#1 -CTTGGCCGGCCATGGCCGCCGCCGCCCGGCCGGCCGGCGGCGAAAT------------G 513
* * ** * * * *** * * ** ** ** ** ** * *
consensus_2946#0 CGGCCGCCAAGCCGCCGCCGCTCGTCACCTCCAGCGTCACCGACTCCGACGGCGGCAGCC 577
consensus_2946#1 CGTGTATGAGTTTGCTGTTCTTGG--AGTCGTAGCGG-ATGGGGGCGAATCATCGATGTG 570
** * ** * * * * **** * * * * * *
consensus_2946#0 TCGTCTCCTCCCCCGCCGCCGACAACCCCTTCTTCGACCCCGTCACCTCCTCCGACAAGC 637
consensus_2946#1 TTGTCTTGTCCCTCTCATCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCG------ 624
* **** **** * * ** * * *** * * ** * ** **
consensus_2946#0 GCTGCTGCGCCATCGCCAGCCCGCCCCCCGCCGCCAAGCAGCAGCACGCCGCCGCCGCGG 697
consensus_2946#1 --TGTT-TGTCGTGGTCAAGACGGGTTAGGCAAGCTTGGGGACTCGCGACGCCATGGCTG 681
** * * * * * ** ** ** * * * * ** **** ** *
consensus_2946#0 GCGCCGACGCGGTGCTCGACATGCTCGCCATGAAGAAGCCGCTGCCGCAGAGGGGCAGGC 757
consensus_2946#1 ACGTGCTGGAATTCTTCTCCTTTTCCATCACTAGTT--TTGCTTCTTCT-----TCTTTC 734
** * * ** * * * ** * *** * * * *
consensus_2946#0 TGCTCCAGTCCGTCATGGAGGCCGGGCCGCTCCTGCAGAACCTGCTCGTCGCCGGCCTTC 817
consensus_2946#1 TTCTTTCTTCTTTCTTGTGGAAAATTCACTCCAAGAAGAAGACTCACTTCTTGTAACTTG 794
* ** ** ** ** * * * * **** * * ** ***
consensus_2946#0 TCCCGCGGTGGCGCAACCCGCCGCCGGTCGCGCTCGACACGCTCCCCGTCGGCGTCCGGG 877
consensus_2946#1 TCTT----TGGTTCGGTTCACAGAAGTACTAGTAGAATACAATTTCAGGTTTGGTTTGGT 850
** *** * * * * * * * * ** * * * ** **
consensus_2946#0 CCGGTGGCGCTGTCTACCCCGGCGCGTCACTCTCGC-CCGGGATCACCTCCTCCGCGGCG 936
consensus_2946#1 TCACT--TTTTTTCTTTTTCAACAAA--AGTTTGGCACTGTAGTGAGATGCTGTACAATG 906
* * * *** * * * * * ** * * * * * ** * *
consensus_2946#0 GTGAT-CGGCTACGGCGGCGGCGCCAATGCCTGCGGGAAGAGGCCCATGGCGGCGGCGGC 995
consensus_2946#1 ATGTTGTTTTTTTTTCTTTTCCTCCGGTCCCTATGAGGAGAGAGAAACAGAGAGAGAGAG 966
** * * * * ** * *** * * **** * * * * *
consensus_2946#0 GGCGGCGGTGGCGGCCAGCTGCTCGCCGGCGGCGTTCAGCGCCAAGCGGCATCGGCTGCA 1055
consensus_2946#1 AGAGAGAGTGAT------------------------------------------------ 978
* * ***
consensus_2946#0 CTGACCGTCCGATCCGATGCTGTCGTGTGCACGGGATCGGACGGCTGTCGTGCGTCCAGC 1115
consensus_2946#1 ------------------------------------------------------------
consensus_2946#0 TTACGACCGGTTGGTTCGTTAGGTGGTGGTCGTGTGGCCCACCTGTCAGTGACAAGGGAT 1175
consensus_2946#1 ------------------------------------------------------------
consensus_2946#0 TGCCATTGAGGGCCCACTTGTCAGTGACATGTGATTACCATTGAGGGCGAGCGAATATTT 1235
consensus_2946#1 ------------------------------------------------------------
consensus_2946#0 GCATGAACCAAAAACATTAGTAGATGCTAACTGCTTAGTGTTAAGAGTCGTCATGATAGA 1295
consensus_2946#1 ------------------------------------------------------------
consensus_2946#0 ATTATTATAGAGTTGATCCTGCTTAATTATGATGTAAATAGGAAGTTAGTATCAAATTTT 1355
consensus_2946#1 ------------------------------------------------------------
consensus_2946#0 AATTAAACCTGTTCCTTGCT 1375
consensus_2946#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||