cluster # 2948

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Oryza sativa
cluster # 2948 cluster # 2948 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2948#0 length = 247 sequences # 1

consensus_2948#1 length = 184 sequences # 1

consensusID : consensus_2948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [GTTGTNNNAGGTTACTTTGACCTGTCAGTAAAAGACACGTTGAAAACCTGGGGTCTGCTGGAGCTGGTCAACTCCGTGGTTGGGCTGATTATTGTGCTGATTATTNGNATGGTNGCGTAAAANGACACCAGAGCCTGCCAATGGCAGNNNNNNNCTGATGACNAAGTCTAAAAATGTGCCCGGNNNNNNNNNTNNNCNNTCCGGGGNNNNNNNNNNNNNGAGGGGAACANNNNNNNNNANNGCCGCT]

[+] EMBL CF195856             [GTTGTNNNAGGTTACTTTGACCTGTCAGTAAAAGACACGTTGAAAACCTGGGGTCTGCTGGAGCTGGTCAACTCCGTGGTTGGGCTGATTATTGTGCTGATTATTNGNATGGTNGCGTAAAANGACACCAGAGCCTGCCAATGGCAGNNNNNNNCTGATGACNAAGTCTAAAAATGTGCCCGGNNNNNNNNNTNNNCNNTCCGGGGNNNNNNNNNNNNNGAGGGGAACANNNNNNNNNANNGCCGCT]




>consensus_2948#0
GTTGTNNNAGGTTACTTTGACCTGTCAGTAAAAGACACGTTGAAAACCTGGGGTCTGCTG
GAGCTGGTCAACTCCGTGGTTGGGCTGATTATTGTGCTGATTATTNGNATGGTNGCGTAA
AANGACACCAGAGCCTGCCAATGGCAGNNNNNNNCTGATGACNAAGTCTAAAAATGTGCC
CGGNNNNNNNNNTNNNCNNTCCGGGGNNNNNNNNNNNNNGAGGGGAACANNNNNNNNNAN
NGCCGCT

consensusID : consensus_2948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence

                              [TAACGATGCATCTTTCTGGTTGTTCAAAGGTTACTTTGACCTGTCAGTAAAAGACACGTTGAAACCTGGGGTCTGCTGGAGCTGGTCANNNNCGTGGTTGGGCTGATTATTGTGCTGATTATTNNNATGGTANCGTAAAAGGACANCAGAGCNTGCCAATGGCAGGCTCNNNCTGATGACANNN]

[+] EMBL CF195878             [TAACGATGCATCTTTCTGGTTGTTCAAAGGTTACTTTGACCTGTCAGTAAAAGACACGTTGAAACCTGGGGTCTGCTGGAGCTGGTCANNNNCGTGGTTGGGCTGATTATTGTGCTGATTATTNNNATGGTANCGTAAAAGGACANCAGAGCNTGCCAATGGCAGGCTCNNNCTGATGACANNN]




>consensus_2948#1
TAACGATGCATCTTTCTGGTTGTTCAAAGGTTACTTTGACCTGTCAGTAAAAGACACGTT
GAAACCTGGGGTCTGCTGGAGCTGGTCANNNNCGTGGTTGGGCTGATTATTGTGCTGATT
ATTNNNATGGTANCGTAAAAGGACANCAGAGCNTGCCAATGGCAGGCTCNNNCTGATGAC
ANNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2948#0      ------------------GTTGTNNNA-GGTTACTTTGACCTGTCAGTAAAAGACACGTT 41
consensus_2948#1      TAACGATGCATCTTTCTGGTTGTTCAAAGGTTACTTTGACCTGTCAGTAAAAGACACGTT 60
                                        *****   * ********************************

consensus_2948#0      GAAAACCTGGGGTCTGCTGGAGCTGGTCAACTCCGTGGTTGGGCTGATTATTGTGCTGAT 101
consensus_2948#1      GAAA-CCTGGGGTCTGCTGGAGCTGGTCANNNNCGTGGTTGGGCTGATTATTGTGCTGAT 119
                      **** ************************    ***************************

consensus_2948#0      TATTNGNATGGTNGCGTAAAANGACACCAGAGCCTGCCAATGGCAGNNNNNNNCTGATGA 161
consensus_2948#1      TATTNNNATGGTANCGTAAAAGGACANCAGAGCNTGCCAATGGCAGGCTCNNNCTGATGA 179
                      ***** ******  ******* **** ****** ************    **********

consensus_2948#0      CNAAGTCTAAAAATGTGCCCGGNNNNNNNNNTNNNCNNTCCGGGGNNNNNNNNNNNNNGA 221
consensus_2948#1      CANNN------------------------------------------------------- 184
                      *                                                           

consensus_2948#0      GGGGAACANNNNNNNNNANNGCCGCT 247
consensus_2948#1      --------------------------