cluster # 2956

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Oryza sativa
cluster # 2956 cluster # 2956 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2956#0 length = 844 sequences # 1

consensus_2956#1 length = 166 sequences # 1

consensusID : consensus_2956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 844
fasta sequence

                              [TCCTCCTCCTCCTCCTCTTCCTCCTTGCCGCCGCGACGGCGACGGCGACGGCGACGGGCAACGCGCTGCCGCCGGAGCCGAAGCCGGCGCGGTGGCCGGACGTCTTCCACGCGAGGCTGTTCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCACCGCTGCGTGTCGCCGACCTCTACTACGACTGGTCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCCGCCGACGACCCGCTCTACGACGTCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCCGCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGCCCGGGCTGGCTCGCCGACGGCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGGACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGAACTTCCTCGACAAGACAGGGATACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCCTGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTCCCTGCCGCCGCCGCAGACGAAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATCACATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAGCTGCGGCGTTTTAGTTACCAAGTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGCTTACAGCACAGTACTGTATAAGAGAGTGTGGTTAATTCAGGAATTTTTCAAGAAGGGTTAATTG]

[+] EMBL AK068238             [TCCTCCTCCTCCTCCTCTTCCTCCTTGCCGCCGCGACGGCGACGGCGACGGCGACGGGCAACGCGCTGCCGCCGGAGCCGAAGCCGGCGCGGTGGCCGGACGTCTTCCACGCGAGGCTGTTCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCACCGCTGCGTGTCGCCGACCTCTACTACGACTGGTCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCCGCCGACGACCCGCTCTACGACGTCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCCGCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGCCCGGGCTGGCTCGCCGACGGCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGGACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGAACTTCCTCGACAAGACAGGGATACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCCTGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTCCCTGCCGCCGCCGCAGACGAAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATCACATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAGCTGCGGCGTTTTAGTTACCAAGTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGCTTACAGCACAGTACTGTATAAGAGAGTGTGGTTAATTCAGGAATTTTTCAAGAAGGGTTAATTG]




>consensus_2956#0
TCCTCCTCCTCCTCCTCTTCCTCCTTGCCGCCGCGACGGCGACGGCGACGGCGACGGGCA
ACGCGCTGCCGCCGGAGCCGAAGCCGGCGCGGTGGCCGGACGTCTTCCACGCGAGGCTGT
TCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCACCGCTGCGTGTCGCCGACC
TCTACTACGACTGGTCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCCG
CCGACGACCCGCTCTACGACGTCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCC
GCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGCCCGGGCTGGCTCGCCGACG
GCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGG
ACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGA
ACTTCCTCGACAAGACAGGGATACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCC
TGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTCCCTGCCGCCGCCGCAGACG
AAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATC
ACATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAG
CTGCGGCGTTTTAGTTACCAAGTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGC
TTACAGCACAGTACTGTATAAGAGAGTGTGGTTAATTCAGGAATTTTTCAAGAAGGGTTA
ATTG

consensusID : consensus_2956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 166
fasta sequence

                              [CAACCACTCCGCCGCGTCGACGGGGCCGCCGCTGCGTGTCGCCGACCTCTACTACGACTGGCCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNNNCGACGACCCGCTCTACGACGNNNAGNGGGACAACGGCACCANCNTCTNNNNNNNCNNN]

[+] EMBL CF196093             [CAACCACTCCGCCGCGTCGACGGGGCCGCCGCTGCGTGTCGCCGACCTCTACTACGACTGGCCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNNNCGACGACCCGCTCTACGACGNNNAGNGGGACAACGGCACCANCNTCTNNNNNNNCNNN]




>consensus_2956#1
CAACCACTCCGCCGCGTCGACGGGGCCGCCGCTGCGTGTCGCCGACCTCTACTACGACTG
GCCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNNNCGACGACCCGCT
CTACGACGNNNAGNGGGACAACGGCACCANCNTCTNNNNNNNCNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2956#0      TCCTCCTCCTCCTCCTCTTCCTCCTTGCCGCCGCGACGGCGACGGCGACGGCGACGGGCA 60
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      ACGCGCTGCCGCCGGAGCCGAAGCCGGCGCGGTGGCCGGACGTCTTCCACGCGAGGCTGT 120
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      TCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCACCGCTGCGTGTCGCCGACC 180
consensus_2956#1      -------------CAACCACTCCGCCGCGTCGACGGGGCCGCCGCTGCGTGTCGCCGACC 47
                                   *************************** *******************

consensus_2956#0      TCTACTACGACTGGTCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCCG 240
consensus_2956#1      TCTACTACGACTGGCCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNN 107
                      ************** *******************************************  

consensus_2956#0      CCGACGACCCGCTCTACGACGTCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCC 300
consensus_2956#1      NCGACGACCCGCTCTACGACGNNNAGNGGGACAACGGCACCANCNTCTNNNNNNNCNNN- 166
                       ********************   ** *************** * ***       *    

consensus_2956#0      GCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGCCCGGGCTGGCTCGCCGACG 360
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      GCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGG 420
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      ACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGA 480
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      ACTTCCTCGACAAGACAGGGATACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCC 540
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      TGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTCCCTGCCGCCGCCGCAGACG 600
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      AAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATC 660
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      ACATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAG 720
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      CTGCGGCGTTTTAGTTACCAAGTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGC 780
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      TTACAGCACAGTACTGTATAAGAGAGTGTGGTTAATTCAGGAATTTTTCAAGAAGGGTTA 840
consensus_2956#1      ------------------------------------------------------------
                                                                                  

consensus_2956#0      ATTG 844
consensus_2956#1      ----