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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence
[GGAGGAATTGAAGGTGTTGGGTGCCAAGAAGGCGGAGATGGATGCGAGGGTGGTGTCTTTGGAGGCGGAGCTCAAAGCTGCTGTGGCTAAGAGAGGGGAATTGGAGGCTGATGCCGTGGCGAAGAAGGGGGAATTCGATATGGTGAAGGGCAAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGAAGAAGCATCGCGCATCTGAGGCAGAGGTTGAGAGGCTCTGCGCGGAATTGGGCGTGCTGACAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTTGGGGAGCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCTCAAGCTGTTAAGCTCAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACGAAGCGCTCGCTCCTGAATGATGAGAAGAATTCTGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGTGCAAGCTGAAGTCGAAAATTGAGGCTATTGAGAACTGCAATGTTGAGAAGGACGGTGAGATTGGGAAGCTGAAGGTGGCACTGATGGAAAAGAGGGCGAAGATCGATGTTCTAATCAAGGACATCGAGCAGCTGAATCTCGAAGTGGCTGAGGCACATAGGAAGAGGAAGGGTGGCATTTGGGCTTGGCTATATGCGGCTACGACTACCATGGTGGCTGCCATCTCCTTCATCTATGCCACCAAGTCCCGGTGAAGGACTTACACTTTTCTTTTTGCTATGTTCCGTTTTCTGTTTACATGCTTATCAGTATGCAACTCGATATGATAAGGTTGCTATCTCGCTGAATTACTCTATGATGGTGATTGGCTGCCACTATGCAATGAAGTGAAACTTTT]
[+] EMBL AK059455 [GGAGGAATTGAAGGTGTTGGGTGCCAAGAAGGCGGAGATGGATGCGAGGGTGGTGTCTTTGGAGGCGGAGCTCAAAGCTGCTGTGGCTAAGAGAGGGGAATTGGAGGCTGATGCCGTGGCGAAGAAGGGGGAATTCGATATGGTGAAGGGCAAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGAAGAAGCATCGCGCATCTGAGGCAGAGGTTGAGAGGCTCTGCGCGGAATTGGGCGTGCTGACAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTTGGGGAGCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCTCAAGCTGTTAAGCTCAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACGAAGCGCTCGCTCCTGAATGATGAGAAGAATTCTGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGTGCAAGCTGAAGTCGAAAATTGAGGCTATTGAGAACTGCAATGTTGAGAAGGACGGTGAGATTGGGAAGCTGAAGGTGGCACTGATGGAAAAGAGGGCGAAGATCGATGTTCTAATCAAGGACATCGAGCAGCTGAATCTCGAAGTGGCTGAGGCACATAGGAAGAGGAAGGGTGGCATTTGGGCTTGGCTATATGCGGCTACGACTACCATGGTGGCTGCCATCTCCTTCATCTATGCCACCAAGTCCCGGTGAAGGACTTACACTTTTCTTTTTGCTATGTTCCGTTTTCTGTTTACATGCTTATCAGTATGCAACTCGATATGATAAGGTTGCTATCTCGCTGAATTACTCTATGATGGTGATTGGCTGCCACTATGCAATGAAGTGAAACTTTT]
consensusID : consensus_2971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[GAATTCGATATGGTGAAGGGCGAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGGAGAAGCATCGCACATCTGAGGCAGAGGTTGAGAGGCTCTGCACGGAATTGGGCGTGGTGAGAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTGGGGGACCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCCCAAGCTGTTAAGCTGAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACAAAGCGCTCGCTCCTGAATGATGAGAAGAATTATGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGCGCAAGCTGAAGTCGAAAATTGAGGCTCTTGAGAACTGCAATGTTGAGAAGGACAGTGAGATTGGGAAGCTGAAGTTGGCACTGATGGAAAAGAGGGAGAAGATTGATGTCCTAATCAAGGACATTGAGCTGCTGAATCTNNNNNTNGCTGANNNNCATANNAAGAGGAAGGGTGGCATTTGGGCTTGGCTCNNTGCGGCNNNGACTANNATGNNNGCTGCCNNNTCCTTNNNNNATGCCANNNNNNCCCGNNNNNNNACTACACNN]
[+] EMBL CF196183 [GAATTCGATATGGTGAAGGGCGAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGGAGAAGCATCGCACATCTGAGGCAGAGGTTGAGAGGCTCTGCACGGAATTGGGCGTGGTGAGAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTGGGGGACCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCCCAAGCTGTTAAGCTGAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACAAAGCGCTCGCTCCTGAATGATGAGAAGAATTATGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGCGCAAGCTGAAGTCGAAAATTGAGGCTCTTGAGAACTGCAATGTTGAGAAGGACAGTGAGATTGGGAAGCTGAAGTTGGCACTGATGGAAAAGAGGGAGAAGATTGATGTCCTAATCAAGGACATTGAGCTGCTGAATCTNNNNNTNGCTGANNNNCATANNAAGAGGAAGGGTGGCATTTGGGCTTGGCTCNNTGCGGCNNNGACTANNATGNNNGCTGCCNNNTCCTTNNNNNATGCCANNNNNNCCCGNNNNNNNACTACACNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2971#0 GGAGGAATTGAAGGTGTTGGGTGCCAAGAAGGCGGAGATGGATGCGAGGGTGGTGTCTTT 60
consensus_2971#1 ------------------------------------------------------------
consensus_2971#0 GGAGGCGGAGCTCAAAGCTGCTGTGGCTAAGAGAGGGGAATTGGAGGCTGATGCCGTGGC 120
consensus_2971#1 ------------------------------------------------------------
consensus_2971#0 GAAGAAGGGGGAATTCGATATGGTGAAGGGCAAAAACGATAGGCTTCGTTCGGAGGTCGC 180
consensus_2971#1 ----------GAATTCGATATGGTGAAGGGCGAAAACGATAGGCTTCGTTCGGAGGTCGC 50
********************* ****************************
consensus_2971#0 GACAGCAGTGAAGAAGCATCGCGCATCTGAGGCAGAGGTTGAGAGGCTCTGCGCGGAATT 240
consensus_2971#1 GACAGCAGTGGAGAAGCATCGCACATCTGAGGCAGAGGTTGAGAGGCTCTGCACGGAATT 110
********** *********** ***************************** *******
consensus_2971#0 GGGCGTGCTGACAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGG 300
consensus_2971#1 GGGCGTGGTGAGAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGG 170
******* *** ************************************************
consensus_2971#0 TATCATGAGGGAATTTGGGGAGCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGG 360
consensus_2971#1 TATCATGAGGGAATTGGGGGACCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGG 230
*************** ***** **************************************
consensus_2971#0 AGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCTCAAGCTGTTAAGCTCAGAAATGAATT 420
consensus_2971#1 AGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCCCAAGCTGTTAAGCTGAGAAATGAATT 290
********************************* ************** ***********
consensus_2971#0 GAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACGAA 480
consensus_2971#1 GAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACAAA 350
********************************************************* **
consensus_2971#0 GCGCTCGCTCCTGAATGATGAGAAGAATTCTGTTCAGGAGGCACTGGATGCTGAGAAGGC 540
consensus_2971#1 GCGCTCGCTCCTGAATGATGAGAAGAATTATGTTCAGGAGGCACTGGATGCTGAGAAGGC 410
***************************** ******************************
consensus_2971#0 TGAAGCGTGCAAGCTGAAGTCGAAAATTGAGGCTATTGAGAACTGCAATGTTGAGAAGGA 600
consensus_2971#1 TGAAGCGCGCAAGCTGAAGTCGAAAATTGAGGCTCTTGAGAACTGCAATGTTGAGAAGGA 470
******* ************************** *************************
consensus_2971#0 CGGTGAGATTGGGAAGCTGAAGGTGGCACTGATGGAAAAGAGGGCGAAGATCGATGTTCT 660
consensus_2971#1 CAGTGAGATTGGGAAGCTGAAGTTGGCACTGATGGAAAAGAGGGAGAAGATTGATGTCCT 530
* ******************** ********************* ****** ***** **
consensus_2971#0 AATCAAGGACATCGAGCAGCTGAATCTCGAAGTGGCTGAGGCACATAGGAAGAGGAAGGG 720
consensus_2971#1 AATCAAGGACATTGAGCTGCTGAATCTNNNNNTNGCTGANNNNCATANNAAGAGGAAGGG 590
************ **** ********* * ***** **** ***********
consensus_2971#0 TGGCATTTGGGCTTGGCTATATGCGGCTACGACTACCATGGTGGCTGCCATCTCCTTCAT 780
consensus_2971#1 TGGCATTTGGGCTTGGCTCNNTGCGGCNNNGACTANNATGNNNGCTGCCNNNTCCTTNNN 650
****************** ****** ***** *** ****** *****
consensus_2971#0 CTATGCCACCAAGTCCCGGTGAAGGACTTACACTTTTCTTTTTGCTATGTTCCGTTTTCT 840
consensus_2971#1 NNATGCCANNNNNNCCCGNNNNNNNACT-ACACNN------------------------- 684
****** **** *** ****
consensus_2971#0 GTTTACATGCTTATCAGTATGCAACTCGATATGATAAGGTTGCTATCTCGCTGAATTACT 900
consensus_2971#1 ------------------------------------------------------------
consensus_2971#0 CTATGATGGTGATTGGCTGCCACTATGCAATGAAGTGAAACTTTT 945
consensus_2971#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||