cluster # 2974

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Oryza sativa
cluster # 2974 cluster # 2974 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2974#0 length = 349 sequences # 1

consensus_2974#1 length = 330 sequences # 1

consensusID : consensus_2974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [AATCACCAACCTGTATTGGTTGTGGATAGTTTCCAGACAAAACAGAAGAGAAGAGATAGAAATTTTCATCACATGTTTTGACATCTTTGATGACAAGTTCTTGGCAGCACGGTCAATTTGGCATGTGCATAGAGTAAGCATATATACGTCGCAATTCGTTCAAAGCATCCAACCCCAAGAGAAGACATGCCAAGGAGCATGGAGGAGATGGAGATCGCCGGCGGCGGCATGGCGGCGGCGGCGGTGCAGAGGGCGGTGAGGTGCCTCGGCAGAGGTGTCGACATGGCGGGCGACCTGAGGCTGAAGCACTGCAAGGATGAGGGAGGTTGTCTCGTTGCCNNGAGCGGCG]

[+] EMBL CF196257             [AATCACCAACCTGTATTGGTTGTGGATAGTTTCCAGACAAAACAGAAGAGAAGAGATAGAAATTTTCATCACATGTTTTGACATCTTTGATGACAAGTTCTTGGCAGCACGGTCAATTTGGCATGTGCATAGAGTAAGCATATATACGTCGCAATTCGTTCAAAGCATCCAACCCCAAGAGAAGACATGCCAAGGAGCATGGAGGAGATGGAGATCGCCGGCGGCGGCATGGCGGCGGCGGCGGTGCAGAGGGCGGTGAGGTGCCTCGGCAGAGGTGTCGACATGGCGGGCGACCTGAGGCTGAAGCACTGCAAGGATGAGGGAGGTTGTCTCGTTGCCNNGAGCGGCG]




>consensus_2974#0
AATCACCAACCTGTATTGGTTGTGGATAGTTTCCAGACAAAACAGAAGAGAAGAGATAGA
AATTTTCATCACATGTTTTGACATCTTTGATGACAAGTTCTTGGCAGCACGGTCAATTTG
GCATGTGCATAGAGTAAGCATATATACGTCGCAATTCGTTCAAAGCATCCAACCCCAAGA
GAAGACATGCCAAGGAGCATGGAGGAGATGGAGATCGCCGGCGGCGGCATGGCGGCGGCG
GCGGTGCAGAGGGCGGTGAGGTGCCTCGGCAGAGGTGTCGACATGGCGGGCGACCTGAGG
CTGAAGCACTGCAAGGATGAGGGAGGTTGTCTCGTTGCCNNGAGCGGCG

consensusID : consensus_2974#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [AATCACCAACCTGTATTGGTTGTGGATAGTTTCCAGACAAAACAGAAGAGAAGAGATAGAAATTTTCATCACATGTTTTGACATCTTTGATGACAAGTTCTTGGCAGCACGGTCAATTTGGCATGTGCATAGAGTAAGCATATATACGTCGCAATTCGTTCAAAGCATCCAACCCCAAGAGAAGACATGCCAAGGAGCATGGAGGAGATGGAGATCGCCGGCGGCGGCATGGCGGCGGCGGCGGTGCAGAGGGCGGTGAGGTGCCTCGGCAGAGGTGTCGACATGGCGGGCGACCTGNGGCTGAAGCACTGCAAGGATGNNNGNGNNTNN]

[+] EMBL CF196224             [AATCACCAACCTGTATTGGTTGTGGATAGTTTCCAGACAAAACAGAAGAGAAGAGATAGAAATTTTCATCACATGTTTTGACATCTTTGATGACAAGTTCTTGGCAGCACGGTCAATTTGGCATGTGCATAGAGTAAGCATATATACGTCGCAATTCGTTCAAAGCATCCAACCCCAAGAGAAGACATGCCAAGGAGCATGGAGGAGATGGAGATCGCCGGCGGCGGCATGGCGGCGGCGGCGGTGCAGAGGGCGGTGAGGTGCCTCGGCAGAGGTGTCGACATGGCGGGCGACCTGNGGCTGAAGCACTGCAAGGATGNNNGNGNNTNN]




>consensus_2974#1
AATCACCAACCTGTATTGGTTGTGGATAGTTTCCAGACAAAACAGAAGAGAAGAGATAGA
AATTTTCATCACATGTTTTGACATCTTTGATGACAAGTTCTTGGCAGCACGGTCAATTTG
GCATGTGCATAGAGTAAGCATATATACGTCGCAATTCGTTCAAAGCATCCAACCCCAAGA
GAAGACATGCCAAGGAGCATGGAGGAGATGGAGATCGCCGGCGGCGGCATGGCGGCGGCG
GCGGTGCAGAGGGCGGTGAGGTGCCTCGGCAGAGGTGTCGACATGGCGGGCGACCTGNGG
CTGAAGCACTGCAAGGATGNNNGNGNNTNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2974#0      AATCACCAACCTGTATTGGTTGTGGATAGTTTCCAGACAAAACAGAAGAGAAGAGATAGA 60
consensus_2974#1      AATCACCAACCTGTATTGGTTGTGGATAGTTTCCAGACAAAACAGAAGAGAAGAGATAGA 60
                      ************************************************************

consensus_2974#0      AATTTTCATCACATGTTTTGACATCTTTGATGACAAGTTCTTGGCAGCACGGTCAATTTG 120
consensus_2974#1      AATTTTCATCACATGTTTTGACATCTTTGATGACAAGTTCTTGGCAGCACGGTCAATTTG 120
                      ************************************************************

consensus_2974#0      GCATGTGCATAGAGTAAGCATATATACGTCGCAATTCGTTCAAAGCATCCAACCCCAAGA 180
consensus_2974#1      GCATGTGCATAGAGTAAGCATATATACGTCGCAATTCGTTCAAAGCATCCAACCCCAAGA 180
                      ************************************************************

consensus_2974#0      GAAGACATGCCAAGGAGCATGGAGGAGATGGAGATCGCCGGCGGCGGCATGGCGGCGGCG 240
consensus_2974#1      GAAGACATGCCAAGGAGCATGGAGGAGATGGAGATCGCCGGCGGCGGCATGGCGGCGGCG 240
                      ************************************************************

consensus_2974#0      GCGGTGCAGAGGGCGGTGAGGTGCCTCGGCAGAGGTGTCGACATGGCGGGCGACCTGAGG 300
consensus_2974#1      GCGGTGCAGAGGGCGGTGAGGTGCCTCGGCAGAGGTGTCGACATGGCGGGCGACCTGNGG 300
                      ********************************************************* **

consensus_2974#0      CTGAAGCACTGCAAGGATGAGGGAGGTTGTCTCGTTGCCNNGAGCGGCG 349
consensus_2974#1      CTGAAGCACTGCAAGGATGNNNGNGNNTNN------------------- 330
                      *******************   * *  *