cluster # 2986

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Oryza sativa
cluster # 2986 cluster # 2986 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2986#0 length = 893 sequences # 1

consensus_2986#1 length = 310 sequences # 1

consensusID : consensus_2986#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 893
fasta sequence

                              [GTTTCCCTCCTTGCCGCCGCCGCCGCCGCCACCGCCGCCGCAGCCTCCTCTCGCTCCGCCTCACCGCCGCTCGACGCCATGGGCCGCATGCACAGCAGCGGGAAGGGGATGTCCTGCTCGGTGCTCCCCTACAGGCGCGCCGCTCCCGCCTGGGTCAAGACGTCCGCGTCGGAGGTGGAGGAGATGATCGTGCGCGTCGCCAAGAAGGGCCAGCTGCCGTCGCAGATCGGGGCGATCCTCCGCGACGCCCACGCCGTCCCGCTCGCCCAGGGCGTCACCGGCGGCAAGATCCTCCGCGTGCTCAAGTCCCGCGGCCTCGCGCCCGAGGTGCCCGAGGACCTCTACTTCCTCATCAAGAAGGCCGTCGCGATGAGGAAGCACCTCGAGAGGAACAGGAAGGACAAGGACACCAAGTTCCGCCTCATCCTCGTCGAGAGCAGGGTGCACCGCCTCACCCGCTACTACCGCCTCGCCAAGAAGATCCCCGCCTTCTTCAAGTACGACTCCACCACCGCGAGCACTCTCGTGGCCTGAAGTGGAACTGAAGGTTTCGTTCGTTTTCAGCTTCTTTTTTGGGCGACTTGAATTCTCTTGACAGCCATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGATCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTACACCTTGACTTTGGGTAGTTCTTTCTAAAGATGTGTGATAATAGAAAATGCAGTATT]

[+] EMBL AK063015             [GTTTCCCTCCTTGCCGCCGCCGCCGCCGCCACCGCCGCCGCAGCCTCCTCTCGCTCCGCCTCACCGCCGCTCGACGCCATGGGCCGCATGCACAGCAGCGGGAAGGGGATGTCCTGCTCGGTGCTCCCCTACAGGCGCGCCGCTCCCGCCTGGGTCAAGACGTCCGCGTCGGAGGTGGAGGAGATGATCGTGCGCGTCGCCAAGAAGGGCCAGCTGCCGTCGCAGATCGGGGCGATCCTCCGCGACGCCCACGCCGTCCCGCTCGCCCAGGGCGTCACCGGCGGCAAGATCCTCCGCGTGCTCAAGTCCCGCGGCCTCGCGCCCGAGGTGCCCGAGGACCTCTACTTCCTCATCAAGAAGGCCGTCGCGATGAGGAAGCACCTCGAGAGGAACAGGAAGGACAAGGACACCAAGTTCCGCCTCATCCTCGTCGAGAGCAGGGTGCACCGCCTCACCCGCTACTACCGCCTCGCCAAGAAGATCCCCGCCTTCTTCAAGTACGACTCCACCACCGCGAGCACTCTCGTGGCCTGAAGTGGAACTGAAGGTTTCGTTCGTTTTCAGCTTCTTTTTTGGGCGACTTGAATTCTCTTGACAGCCATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGATCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTACACCTTGACTTTGGGTAGTTCTTTCTAAAGATGTGTGATAATAGAAAATGCAGTATT]




>consensus_2986#0
GTTTCCCTCCTTGCCGCCGCCGCCGCCGCCACCGCCGCCGCAGCCTCCTCTCGCTCCGCC
TCACCGCCGCTCGACGCCATGGGCCGCATGCACAGCAGCGGGAAGGGGATGTCCTGCTCG
GTGCTCCCCTACAGGCGCGCCGCTCCCGCCTGGGTCAAGACGTCCGCGTCGGAGGTGGAG
GAGATGATCGTGCGCGTCGCCAAGAAGGGCCAGCTGCCGTCGCAGATCGGGGCGATCCTC
CGCGACGCCCACGCCGTCCCGCTCGCCCAGGGCGTCACCGGCGGCAAGATCCTCCGCGTG
CTCAAGTCCCGCGGCCTCGCGCCCGAGGTGCCCGAGGACCTCTACTTCCTCATCAAGAAG
GCCGTCGCGATGAGGAAGCACCTCGAGAGGAACAGGAAGGACAAGGACACCAAGTTCCGC
CTCATCCTCGTCGAGAGCAGGGTGCACCGCCTCACCCGCTACTACCGCCTCGCCAAGAAG
ATCCCCGCCTTCTTCAAGTACGACTCCACCACCGCGAGCACTCTCGTGGCCTGAAGTGGA
ACTGAAGGTTTCGTTCGTTTTCAGCTTCTTTTTTGGGCGACTTGAATTCTCTTGACAGCC
ATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAAT
CTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTT
GGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGA
TCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTACACC
TTGACTTTGGGTAGTTCTTTCTAAAGATGTGTGATAATAGAAAATGCAGTATT

consensusID : consensus_2986#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence

                              [GCCATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGATCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU162378             [GCCATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGATCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_2986#1
GCCATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTA
AATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTT
GTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTC
GGATCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2986#0      GTTTCCCTCCTTGCCGCCGCCGCCGCCGCCACCGCCGCCGCAGCCTCCTCTCGCTCCGCC 60
consensus_2986#1      ------------------------------------------------------------
                                                                                  

consensus_2986#0      TCACCGCCGCTCGACGCCATGGGCCGCATGCACAGCAGCGGGAAGGGGATGTCCTGCTCG 120
consensus_2986#1      ------------------------------------------------------------
                                                                                  

consensus_2986#0      GTGCTCCCCTACAGGCGCGCCGCTCCCGCCTGGGTCAAGACGTCCGCGTCGGAGGTGGAG 180
consensus_2986#1      ------------------------------------------------------------
                                                                                  

consensus_2986#0      GAGATGATCGTGCGCGTCGCCAAGAAGGGCCAGCTGCCGTCGCAGATCGGGGCGATCCTC 240
consensus_2986#1      ------------------------------------------------------------
                                                                                  

consensus_2986#0      CGCGACGCCCACGCCGTCCCGCTCGCCCAGGGCGTCACCGGCGGCAAGATCCTCCGCGTG 300
consensus_2986#1      ------------------------------------------------------------
                                                                                  

consensus_2986#0      CTCAAGTCCCGCGGCCTCGCGCCCGAGGTGCCCGAGGACCTCTACTTCCTCATCAAGAAG 360
consensus_2986#1      ------------------------------------------------------------
                                                                                  

consensus_2986#0      GCCGTCGCGATGAGGAAGCACCTCGAGAGGAACAGGAAGGACAAGGACACCAAGTTCCGC 420
consensus_2986#1      ------------------------------------------------------------
                                                                                  

consensus_2986#0      CTCATCCTCGTCGAGAGCAGGGTGCACCGCCTCACCCGCTACTACCGCCTCGCCAAGAAG 480
consensus_2986#1      ------------------------------------------------------------
                                                                                  

consensus_2986#0      ATCCCCGCCTTCTTCAAGTACGACTCCACCACCGCGAGCACTCTCGTGGCCTGAAGTGGA 540
consensus_2986#1      ------------------------------------------------------------
                                                                                  

consensus_2986#0      ACTGAAGGTTTCGTTCGTTTTCAGCTTCTTTTTTGGGCGACTTGAATTCTCTTGACAGCC 600
consensus_2986#1      ---------------------------------------------------------GCC 3
                                                                               ***

consensus_2986#0      ATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAAT 660
consensus_2986#1      ATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAAT 63
                      ************************************************************

consensus_2986#0      CTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTT 720
consensus_2986#1      CTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTT 123
                      ************************************************************

consensus_2986#0      GGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGA 780
consensus_2986#1      GGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGA 183
                      ************************************************************

consensus_2986#0      TCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTACACC 840
consensus_2986#1      TCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTAAAAA 243
                      ******************************************************** *  

consensus_2986#0      TTGACTTTGGGTAGTTCTTTCTAAAGATGTGTGATAATAGAAAATGCAGTATT------- 893
consensus_2986#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 303
                         *        *         *** *      * ** * ****   *  *         

consensus_2986#0      -------
consensus_2986#1      AAAAAAA 310