cluster # 2992

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Oryza sativa
cluster # 2992 cluster # 2992 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2992#0 length = 403 sequences # 1

consensus_2992#1 length = 344 sequences # 1

consensusID : consensus_2992#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [CCGCATCTCGCCTGCACGGCGCGACGATGGCGGGGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCNGCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTCGTNGGTTTCCCTCGGGCAGATCCAGTGCCGACGGTTTCCTGCGGCGGATCCAACGGCAACGTAGAAATCGCCGATCCGGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGGTGATGTTTTTGTTCTTCTTCATGTTCTTTTTCTCAATCGGTTGATTGTCCGATTGGATTTTGTTCAGTAATGAATCGGTGCGAATTTATGGGTGCTTTAAAA]

[+] EMBL AU162518             [CCGCATCTCGCCTGCACGGCGCGACGATGGCGGGGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCNGCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTCGTNGGTTTCCCTCGGGCAGATCCAGTGCCGACGGTTTCCTGCGGCGGATCCAACGGCAACGTAGAAATCGCCGATCCGGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGGTGATGTTTTTGTTCTTCTTCATGTTCTTTTTCTCAATCGGTTGATTGTCCGATTGGATTTTGTTCAGTAATGAATCGGTGCGAATTTATGGGTGCTTTAAAA]




>consensus_2992#0
CCGCATCTCGCCTGCACGGCGCGACGATGGCGGGGTGCGGAGGAGACGACGGTGATAGTC
GTCCCTCCTCCTCCNGCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTT
AGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTCGTNGGTTTCCCTCGGGCAGA
TCCAGTGCCGACGGTTTCCTGCGGCGGATCCAACGGCAACGTAGAAATCGCCGATCCGGC
TTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCG
GTGATGTTTTTGTTCTTCTTCATGTTCTTTTTCTCAATCGGTTGATTGTCCGATTGGATT
TTGTTCAGTAATGAATCGGTGCGAATTTATGGGTGCTTTAAAA

consensusID : consensus_2992#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [NACTGTTGNGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCACCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTGTNGGTTTCCCTCGGGCAGATCCAGTGNCGACGCTTCCTGCGGCGGATCCAACGNCAACGTAGAAATCGCCGATCCGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGAGCGGTGGACCTGAGCGTAGTGAGAGAACGNCGCACGGTTCCAGAGCGAGNGCGAATCTCGATCCTTCCACC]

[+] EMBL C27409               [NACTGTTGNGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCACCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTGTNGGTTTCCCTCGGGCAGATCCAGTGNCGACGCTTCCTGCGGCGGATCCAACGNCAACGTAGAAATCGCCGATCCGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGAGCGGTGGACCTGAGCGTAGTGAGAGAACGNCGCACGGTTCCAGAGCGAGNGCGAATCTCGATCCTTCCACC]




>consensus_2992#1
NACTGTTGNGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCACCTCCTCCCT
CTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCA
AGATCCGACGGCGTGTNGGTTTCCCTCGGGCAGATCCAGTGNCGACGCTTCCTGCGGCGG
ATCCAACGNCAACGTAGAAATCGCCGATCCGCTTCACCGATGGCGCCTCGTGGACGGATC
TGGTGGCGACGACGATGTTGGTGGCTTTCCCGAGCGGTGGACCTGAGCGTAGTGAGAGAA
CGNCGCACGGTTCCAGAGCGAGNGCGAATCTCGATCCTTCCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2992#0      CCGCATCTCGCCTGCACGGCGCGACGATGGCGGGGTGCGGAGGAGACGACGGTGATAGTC 60
consensus_2992#1      -------------------------NACTGTTGNGTGCGGAGGAGACGACGGTGATAGTC 35
                                                *  *  * **************************

consensus_2992#0      GTCCCTCCTCCTCCNGCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTT 120
consensus_2992#1      GTCCCTCCTCCTCCACCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTT 95
                      **************  ********************************************

consensus_2992#0      AGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTCGTNGGTTTCCCTCGGGCAGA 180
consensus_2992#1      AGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGT-GTNGGTTTCCCTCGGGCAGA 154
                      *************************************** ********************

consensus_2992#0      TCCAGTGCCGACGGTTTCCTGCGGCGGATCCAACGGCAACGTAGAAATCGCCGATCCGGC 240
consensus_2992#1      TCCAGTGNCGACG-CTTCCTGCGGCGGATCCAACGNCAACGTAGAAATCGCCGATCCG-C 212
                      ******* *****  ******************** ********************** *

consensus_2992#0      TTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCG 300
consensus_2992#1      TTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCG 272
                      ************************************************************

consensus_2992#0      -GTGATGTTTTTGTTCTTCTTCATGTTCTTTTTCTCAATC---GGTTGATTGTCCGATTG 356
consensus_2992#1      AGCGGTGGACCTGAGCGTAGTGAGAGAACGNCGCACGGTTCCAGAGCGAGNGCGAATCTC 332
                       * * **    **  * *  * *          * *  *    *   **  *      * 

consensus_2992#0      GATTTTGTTCAGTAATGAATCGGTGCGAATTTATGGGTGCTTTAAAA 403
consensus_2992#1      GATCCT-TCCACC---------------------------------- 344
                      ***  * * **