cluster # 2993

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Oryza sativa
cluster # 2993 cluster # 2993 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2993#0 length = 497 sequences # 1

consensus_2993#1 length = 281 sequences # 1

consensusID : consensus_2993#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [CCCCAATAAGTTCCAAATGCCAAGCCACAACCAAATGTGGTGGCCCCAAAACAAAGGCCTTCCAAGGCCTTGGTTAGCCGCCACACCACAATCCTCAACCTAACCCAAGCCCCCACTTTAGTTTAGCCCTTTCAGGCCAGAATTTGTCCCAAGCAAAACTTAACCAGCTGGCAACCAAGGTCAGGTTTTGTCTTACATTTGATCAAGACTCATAGCTCAAAGCTCAAAGCATTTGCTGCGCACATTATAACTGTGCCATGCACATGATGTGGGTATGCTATCCTGAACTGACTGACACTTGTCTGCCGAGGACGCTATGTCCCCACCCGTTGGGTGGTGTGCTGGGTGACCTGGAATGTGGTGAATGAGTGATGAATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCAATGCATGCATGCAATGGCAGTGGACACAAGTTGGAAACTTGATGTCATATAAATCTAAATAAAATCACCTATTTAAATAAAAAAAAAA]

[+] EMBL BI803149             [CCCCAATAAGTTCCAAATGCCAAGCCACAACCAAATGTGGTGGCCCCAAAACAAAGGCCTTCCAAGGCCTTGGTTAGCCGCCACACCACAATCCTCAACCTAACCCAAGCCCCCACTTTAGTTTAGCCCTTTCAGGCCAGAATTTGTCCCAAGCAAAACTTAACCAGCTGGCAACCAAGGTCAGGTTTTGTCTTACATTTGATCAAGACTCATAGCTCAAAGCTCAAAGCATTTGCTGCGCACATTATAACTGTGCCATGCACATGATGTGGGTATGCTATCCTGAACTGACTGACACTTGTCTGCCGAGGACGCTATGTCCCCACCCGTTGGGTGGTGTGCTGGGTGACCTGGAATGTGGTGAATGAGTGATGAATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCAATGCATGCATGCAATGGCAGTGGACACAAGTTGGAAACTTGATGTCATATAAATCTAAATAAAATCACCTATTTAAATAAAAAAAAAA]




>consensus_2993#0
CCCCAATAAGTTCCAAATGCCAAGCCACAACCAAATGTGGTGGCCCCAAAACAAAGGCCT
TCCAAGGCCTTGGTTAGCCGCCACACCACAATCCTCAACCTAACCCAAGCCCCCACTTTA
GTTTAGCCCTTTCAGGCCAGAATTTGTCCCAAGCAAAACTTAACCAGCTGGCAACCAAGG
TCAGGTTTTGTCTTACATTTGATCAAGACTCATAGCTCAAAGCTCAAAGCATTTGCTGCG
CACATTATAACTGTGCCATGCACATGATGTGGGTATGCTATCCTGAACTGACTGACACTT
GTCTGCCGAGGACGCTATGTCCCCACCCGTTGGGTGGTGTGCTGGGTGACCTGGAATGTG
GTGAATGAGTGATGAATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCAATGCATGCATG
CAATGGCAGTGGACACAAGTTGGAAACTTGATGTCATATAAATCTAAATAAAATCACCTA
TTTAAATAAAAAAAAAA

consensusID : consensus_2993#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [CTGCAAAGTCTTCCAAAACTTTGCTGGCCCACTTGAAACTGGCGCCAATCCCAATATGGGGGGTATCTTATCCCTTGGACTACTAACAATTTGGCTCACAGAGGAGCAATTCCCACACCCAGTGGGTGGGTGTTCTGGGTACTGGAATGTGTGAATGAGTGATAATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCATGGCAATCAATGCATGCGTGCGACAGGGGAAACGGAGGGCAAAAAAGCGAAATAAGCACCGAGGGAAAGACCCAAAAAAAAAA]

[+] EMBL BI801936             [CTGCAAAGTCTTCCAAAACTTTGCTGGCCCACTTGAAACTGGCGCCAATCCCAATATGGGGGGTATCTTATCCCTTGGACTACTAACAATTTGGCTCACAGAGGAGCAATTCCCACACCCAGTGGGTGGGTGTTCTGGGTACTGGAATGTGTGAATGAGTGATAATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCATGGCAATCAATGCATGCGTGCGACAGGGGAAACGGAGGGCAAAAAAGCGAAATAAGCACCGAGGGAAAGACCCAAAAAAAAAA]




>consensus_2993#1
CTGCAAAGTCTTCCAAAACTTTGCTGGCCCACTTGAAACTGGCGCCAATCCCAATATGGG
GGGTATCTTATCCCTTGGACTACTAACAATTTGGCTCACAGAGGAGCAATTCCCACACCC
AGTGGGTGGGTGTTCTGGGTACTGGAATGTGTGAATGAGTGATAATGGGTGTGCAAAATG
GTTGAAAAATAAAGTGCATGGCAATCAATGCATGCGTGCGACAGGGGAAACGGAGGGCAA
AAAAGCGAAATAAGCACCGAGGGAAAGACCCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2993#0      CCCCAATAAGTTCCAAATGCCAAGCCACAACCAAATGTGGTGGCCCCAAAACAAAGGCCT 60
consensus_2993#1      ------------------------------------------------------------
                                                                                  

consensus_2993#0      TCCAAGGCCTTGGTTAGCCGCCACACCACAATCCTCAACCTAACCCAAGCCCCCACTTTA 120
consensus_2993#1      ------------------------------------------------------------
                                                                                  

consensus_2993#0      GTTTAGCCCTTTCAGGCCAGAATTTGTCCCAAGCAAAACTTAACCAGCTGGCAACCAAGG 180
consensus_2993#1      ------------------------------------------------------------
                                                                                  

consensus_2993#0      TCAGGTTTTGTCTTACATTTGATCAAGACTCATAGCTCAAAGCTCAAAGCATTTGCTGCG 240
consensus_2993#1      --------------------------------CTGCAAAGTCTTCCAAAACTTTGCTGGC 28
                                                        **  *    ** **   *******  

consensus_2993#0      CACATTATAACTG-TGCCATGCACATGATGTGGG-TATGCTATCC--TGAACTGACTGAC 296
consensus_2993#1      CCACTTGAAACTGGCGCCAATCCCAATATGGGGGGTATCTTATCCCTTGGACT-ACTAAC 87
                      *   **  *****  ****  * **  *** *** ***  *****  ** *** *** **

consensus_2993#0      A-CTTGTCTGCCGAGGACGCTATGTCCCCACCCGTTGGGTGG-TGTGCTGGGTGACCTGG 354
consensus_2993#1      AATTTGGCTCACAGAGGAGCAATTCCCACACCCAGTGGGTGGGTGTTCTGGGTA--CTGG 145
                      *  *** **  *   *  ** **  ** *****  ******* *** ******   ****

consensus_2993#0      AATGTGGTGAATGAGTGATGAATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCAATGCA 414
consensus_2993#1      AATGTG-TGAATGAGTGAT-AATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCATGGCA 203
                      ****** ************ ***********************************  ***

consensus_2993#0      -----TGCATGCA-ATGGCAGTGGACACAAGTTGGAAACTTGATGTCATATAAATCTAAA 468
consensus_2993#1      ATCAATGCATGCGTGCGACAGGGGAAACGGAGGGCAAA---AAAGCGAAATAAGCACCGA 260
                           *******    * *** *** **     * ***    * *  * ****      *

consensus_2993#0      TAAAATCACCTATTTAAATAAAAAAAAAA 497
consensus_2993#1      GGGAAAGACCCA---AAAAAAAAA----- 281
                         **  *** *   *** *****